Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu013852.1 Olea europaea HOM05D003978 ORTHO05D015758 9.5e-32 139.4 64 100.0
Dinv41792 Davidia involucrata HOM05D003978 ORTHO05D006033 1.5e-13 79.0 42 85.7
HanXRQChr14g0456531 Helianthus annuus HOM05D003978 ORTHO05D006033 1.5e-13 79.0 42 81.0
Lsat_1_v5_gn_2_113200 Lactuca sativa HOM05D003978 ORTHO05D006033 5.8e-13 77.0 42 81.0
Cc02_g10780 Coffea canephora HOM05D003978 ORTHO05D015758 9.8e-13 76.3 52 65.4
PGSC0003DMG400016922 Solanum tuberosum HOM05D003978 ORTHO05D006033 3.7e-12 74.3 42 76.2
CSS0034790 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 6.4e-12 73.6 42 76.2
Migut.F01713 Erythranthe guttata HOM05D003978 ORTHO05D006033 6.4e-12 73.6 42 73.8
Nitab4.5_0001450g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 6.4e-12 73.6 42 71.4
Nitab4.5_0002285g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 6.4e-12 73.6 42 71.4
ClCG05G021270 Citrullus lanatus HOM05D003978 ORTHO05D006033 1.1e-11 72.8 42 81.0
CsaV3_5G036020 Cucumis sativus L. HOM05D001446 ORTHO05D001360 1.1e-11 72.8 42 81.0
Oeu007407.1 Olea europaea HOM05D003978 ORTHO05D006033 1.4e-11 72.4 38 92.1
Sed0002426 Sechium edule HOM05D003978 ORTHO05D006033 1.4e-11 72.4 42 81.0
Sopen03g019840 Solanum pennellii HOM05D003978 ORTHO05D006033 1.4e-11 72.4 42 73.8
DCAR_006405 Daucus carota HOM05D003978 ORTHO05D006033 1.9e-11 72.0 41 78.0
ECA238G2158 Erigeron canadensis HOM05D003978 ORTHO05D006033 1.9e-11 72.0 42 73.8
MD01G1101500 Malus domestica HOM05D003978 ORTHO05D006033 2.4e-11 71.6 42 76.2
Peaxi162Scf00145g00811 Petunia axillaris HOM05D003978 ORTHO05D006033 2.4e-11 71.6 42 71.4
Peaxi162Scf00253g00327 Petunia axillaris HOM05D003978 ORTHO05D006033 4.1e-11 70.9 42 71.4
PSO339G1141 Papaver somniferum HOM05D003978 ORTHO05D006033 5.4e-11 70.5 42 69.0
PSO801G0725 Papaver somniferum HOM05D003978 ORTHO05D006033 5.4e-11 70.5 42 69.0
PGSC0003DMG400031080 Solanum tuberosum HOM05D003978 ORTHO05D006033 5.4e-11 70.5 42 69.0
MSTRG.9145 Avicennia marina HOM05D003978 ORTHO05D006033 7.0e-11 70.1 42 73.8
MELO3C012401.2 Cucumis melo HOM05D003978 ORTHO05D006033 7.0e-11 70.1 38 86.8
Lj2A22G66 Lonicera japonica HOM05D003978 ORTHO05D015758 7.0e-11 70.1 38 78.9
Sed0020000 Sechium edule HOM05D003978 ORTHO05D006033 7.0e-11 70.1 39 84.6
Cpa.g.sc53.146 Carica papaya HOM05D003978 ORTHO05D015758 9.2e-11 69.7 40 80.0
Duzib128G0911 Durio zibethinus HOM05D003978 ORTHO05D006033 9.2e-11 69.7 43 76.7
Lj3A937G87 Lonicera japonica HOM05D003978 ORTHO05D006033 1.2e-10 69.3 44 68.2
MD07G1168200 Malus domestica HOM05D003978 ORTHO05D006033 1.2e-10 69.3 42 71.4
Sabra10G0177400 Salix brachista HOM05D003978 ORTHO05D006033 1.2e-10 69.3 42 81.0
Sopen11g003980 Solanum pennellii HOM05D003978 ORTHO05D006033 1.2e-10 69.3 42 66.7
Potri.010G228700 Populus trichocarpa HOM05D003978 ORTHO05D006033 1.6e-10 68.9 42 76.2
PGR044G1831 Punica granatum HOM05D003978 ORTHO05D006033 1.6e-10 68.9 42 73.8
Solyc03g071560.4 Solanum lycopersicum HOM05D003978 ORTHO05D006033 1.6e-10 68.9 42 71.4
Thecc.10G086400 Theobroma cacao HOM05D003978 ORTHO05D006033 1.6e-10 68.9 42 76.2
SalBow6G2109 Salvia bowleyana HOM05D003978 ORTHO05D015758 2.0e-10 68.6 44 65.9
SGA_v2.0_scaffold51G18710 Striga asiatica HOM05D003978 ORTHO05D006033 2.7e-10 68.2 40 72.5
Nn6g35249 Nelumbo nucifera HOM05D003978 ORTHO05D006033 3.5e-10 67.8 42 73.8
TWI38G1352 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 4.6e-10 67.4 42 76.2
MSTRG.8127 Avicennia marina HOM05D003978 ORTHO05D006033 6.0e-10 67.0 42 73.8
CANSAT64G1994 Cannabis sativa HOM05D003978 ORTHO05D006033 7.8e-10 66.6 42 69.0
TWI15G0746 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 7.8e-10 66.6 42 76.2
GSVIVG01016195001 Vitis vinifera HOM05D003978 ORTHO05D006033 7.8e-10 66.6 38 81.6
Duzib114G0897 Durio zibethinus HOM05D003978 ORTHO05D006033 1.0e-09 66.2 42 71.4
Eucgr.J01044 Eucalyptus grandis HOM05D003978 ORTHO05D006033 1.0e-09 66.2 38 73.7
Gohir.D10G209000 Gossypium hirsutum HOM05D003978 ORTHO05D006033 1.0e-09 66.2 42 73.8
Gorai.011G235100 Gossypium raimondii HOM05D003978 ORTHO05D006033 1.0e-09 66.2 42 73.8
Potri.008G033000 Populus trichocarpa HOM05D003978 ORTHO05D006033 1.3e-09 65.9 42 71.4
arahy.Tifrunner.gnm1.ann1.3AH3YU Arachis hypogaea HOM05D003978 ORTHO05D006033 1.7e-09 65.5 42 71.4
MBI04_g13679_MAGBIO Magnolia biondii HOM05D003978 ORTHO05D006033 1.7e-09 65.5 42 71.4
Ca_11194_v3 Cicer arietinum L. HOM05D003978 ORTHO05D006033 2.3e-09 65.1 42 71.4
RcHm_v2.0_Chr1g0362301 Rosa chinensis HOM05D003978 ORTHO05D006033 2.3e-09 65.1 42 69.0
TAR623G0946 Trochodendron aralioides HOM05D003978 ORTHO05D006033 2.3e-09 65.1 42 69.0
VMungo0720G1413 Vigna mungo HOM05D003978 ORTHO05D006033 2.3e-09 65.1 42 73.8
ATR0665G443 Amborella trichopoda HOM05D003978 ORTHO05D015758 3.0e-09 64.7 38 76.3
Glyma.20G113200 Glycine max HOM05D003978 ORTHO05D006033 3.9e-09 64.3 42 69.0
Glyma.10G276500 Glycine max HOM05D003978 ORTHO05D006033 6.6e-09 63.5 42 69.0
Sabra08G0021900 Salix brachista HOM05D003978 ORTHO05D006033 6.6e-09 63.5 38 76.3
Cfa001800 Carpinus fangiana HOM05D003978 ORTHO05D006033 8.6e-09 63.2 42 69.0
Lj5g0022774 Lotus japonicus HOM05D003978 ORTHO05D006033 8.6e-09 63.2 42 69.0
SEGI_04637 Sequoiadendron giganteum HOM05D003978 ORTHO05D006033 1.1e-08 62.8 42 59.5
TPR.G26271 Trifolium pratense HOM05D003978 ORTHO05D006033 1.1e-08 62.8 42 66.7
arahy.Tifrunner.gnm1.ann1.SNA779 Arachis hypogaea HOM05D003978 ORTHO05D006033 1.9e-08 62.0 38 73.7
HPP92_017522 Vanilla planifolia HOM05D003978 ORTHO05D006033 2.5e-08 61.6 42 66.7
CiPaw.02G171600 Carya illinoinensis HOM05D003978 ORTHO05D006033 3.3e-08 61.2 42 64.3
Haze_16750 Corylus avellana HOM05D003978 ORTHO05D015758 3.3e-08 61.2 38 73.7
CsaV3_2G021100 Cucumis sativus L. HOM05D003978 ORTHO05D006033 3.3e-08 61.2 42 64.3
SEGI_12114 Sequoiadendron giganteum HOM05D003978 ORTHO05D006033 4.3e-08 60.8 42 57.1
TWI63G1197 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 4.3e-08 60.8 42 66.7
CDE09G0059 Ceratophyllum demersum HOM05D000278 ORTHO05D004673 5.6e-08 60.5 42 64.3
Haze_16751 Corylus avellana HOM05D003978 ORTHO05D006033 5.6e-08 60.5 44 61.4
TAR633G1384 Trochodendron aralioides HOM05D003978 ORTHO05D006033 5.6e-08 60.5 42 71.4
Cfa001801 Carpinus fangiana HOM05D003978 ORTHO05D006033 7.3e-08 60.1 42 66.7
Aqoxy2G01695 Aquilegia oxysepala HOM05D003978 ORTHO05D006033 9.5e-08 59.7 40 62.5
CiPaw.01G267500 Carya illinoinensis HOM05D003978 ORTHO05D006033 1.2e-07 59.3 42 64.3
TAR636G3645 Trochodendron aralioides HOM05D001807 ORTHO05D002044 1.2e-07 59.3 42 69.0
Atru.chr12.874 Acer truncatum HOM05D003978 ORTHO05D015758 1.6e-07 58.9 36 80.6
Thhalv10023624m.g Eutrema salsugineum HOM05D003978 ORTHO05D006033 1.6e-07 58.9 32 78.1
GSVIVG01033666001 Vitis vinifera HOM05D003978 ORTHO05D000124 3.6e-07 57.8 42 61.9
Zm00001eb217310 Zea mays HOM05D003978 ORTHO05D006033 3.6e-07 57.8 42 61.9
QL07p042820 Quercus lobata HOM05D003978 ORTHO05D006033 4.7e-07 57.4 37 64.9
THA.LOC104816430 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 4.7e-07 57.4 42 69.0
CDE02G4598 Ceratophyllum demersum HOM05D003978 ORTHO05D006033 6.2e-07 57.0 42 57.1
FvH4_7g18520 Fragaria vesca HOM05D003978 ORTHO05D006033 6.2e-07 57.0 42 57.1
CANSAT80G2867 Cannabis sativa HOM05D003978 ORTHO05D006033 8.1e-07 56.6 36 66.7
Lj5C196T12 Lonicera japonica HOM05D000142 ORTHO05D000124 1.1e-06 56.2 38 60.5
CsaV3_2G020900 Cucumis sativus L. HOM05D003978 ORTHO05D006033 1.4e-06 55.8 36 69.4
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 1.8e-06 55.5 42 59.5
Os03g0681900 Oryza sativa ssp. japonica HOM05D003978 ORTHO05D006033 2.3e-06 55.1 42 61.9
FAN01G2622 Fragaria x ananassa HOM05D003978 ORTHO05D006033 4.0e-06 54.3 38 60.5
FAN06G3745 Fragaria x ananassa HOM05D003978 ORTHO05D006033 4.0e-06 54.3 38 60.5
FAN06G5022 Fragaria x ananassa HOM05D003978 ORTHO05D006033 4.0e-06 54.3 38 60.5
FAN10G1475 Fragaria x ananassa HOM05D003978 ORTHO05D006033 4.0e-06 54.3 38 60.5
Sp2g04070 Schrenkiella parvula HOM05D003978 ORTHO05D006033 5.2e-06 53.9 36 66.7
CARHR052280 Cardamine hirsuta HOM05D003978 ORTHO05D006033 6.8e-06 53.5 34 70.6
Thhalv10015645m.g Eutrema salsugineum HOM05D003978 ORTHO05D015758 6.8e-06 53.5 42 66.7
Lsat_1_v5_gn_7_91261 Lactuca sativa HOM05D000142 ORTHO05D000124 6.8e-06 53.5 38 55.3
Rhsim03G0089800 Rhododendron simsii HOM05D003978 ORTHO05D006033 6.8e-06 53.5 42 61.9
AL2G15940 Arabidopsis lyrata HOM05D003978 ORTHO05D006033 8.9e-06 53.1 30 73.3
Carub.0002s0468 Capsella rubella HOM05D003978 ORTHO05D006033 8.9e-06 53.1 30 73.3


User provided reference genes

Program Settings