Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu011533.1 Olea europaea HOM05D002948 ORTHO05D289869 2.1e-58 228.8 113 100.0
Oeu010049.1 Olea europaea HOM05D002948 ORTHO05D003577 1.9e-14 82.8 54 72.2
Lsat_1_v5_gn_3_44201 Lactuca sativa HOM05D002948 ORTHO05D003577 5.0e-12 74.7 56 60.7
Potri.004G163300 Populus trichocarpa HOM05D002948 ORTHO05D003577 5.0e-12 74.7 56 60.7
HanXRQChr15g0478321 Helianthus annuus HOM05D002948 ORTHO05D003577 6.6e-12 74.3 49 69.4
HanXRQChr17g0543721 Helianthus annuus HOM05D002948 ORTHO05D003577 1.5e-11 73.2 49 67.3
CAN.G170.106 Capsicum annuum HOM05D002948 ORTHO05D003577 1.9e-11 72.8 49 65.3
Sabra04G0109600 Salix brachista HOM05D002948 ORTHO05D003577 1.9e-11 72.8 53 62.3
Cc02_g16860 Coffea canephora HOM05D002948 ORTHO05D003577 2.5e-11 72.4 49 63.3
Sc08g0000930 Simmondsia chinensis HOM05D002948 ORTHO05D003577 3.3e-11 72.0 56 57.1
Lsat_1_v5_gn_4_67421 Lactuca sativa HOM05D002948 ORTHO05D003577 4.3e-11 71.6 56 58.9
Manes.04G083000 Manihot esculenta HOM05D002948 ORTHO05D003577 4.3e-11 71.6 56 55.4
THA.LOC104820175 Tarenaya hassleriana HOM05D002948 ORTHO05D003577 4.3e-11 71.6 50 64.0
FvH4_7g04860 Fragaria vesca HOM05D002948 ORTHO05D003577 5.6e-11 71.2 49 63.3
AUR62010378 Chenopodium quinoa HOM05D002948 ORTHO05D003577 7.3e-11 70.9 53 60.4
Manes.11G081600 Manihot esculenta HOM05D002948 ORTHO05D003577 7.3e-11 70.9 56 53.6
Medtr4g072020 Medicago truncatula HOM05D002948 ORTHO05D003577 7.3e-11 70.9 56 58.9
TWI79G0104 Tripterygium wilfordii HOM05D002948 ORTHO05D003577 7.3e-11 70.9 49 63.3
Nitab4.5_0005266g0020 Nicotiana tabacum HOM05D002948 ORTHO05D003577 9.5e-11 70.5 56 58.9
Nitab4.5_0005932g0030 Nicotiana tabacum HOM05D002948 ORTHO05D003577 9.5e-11 70.5 56 58.9
Sopen01g052570 Solanum pennellii HOM05D002948 ORTHO05D003577 9.5e-11 70.5 55 58.2
PGSC0003DMG400001662 Solanum tuberosum HOM05D002948 ORTHO05D003577 9.5e-11 70.5 55 58.2
TAR381G1534 Trochodendron aralioides HOM05D002948 ORTHO05D003577 9.5e-11 70.5 56 57.1
Actinidia00576 Actinidia chinensis HOM05D002948 ORTHO05D003577 1.2e-10 70.1 57 54.4
EL10Ac9g21627 Beta vulgaris HOM05D002948 ORTHO05D003577 1.2e-10 70.1 53 58.5
Eucgr.G01735 Eucalyptus grandis HOM05D002948 ORTHO05D003577 1.2e-10 70.1 50 62.0
Solyc10g054440.3 Solanum lycopersicum HOM05D002948 ORTHO05D003577 1.2e-10 70.1 53 60.4
Sopen10g024370 Solanum pennellii HOM05D002948 ORTHO05D003577 1.2e-10 70.1 53 60.4
PGSC0003DMG400026671 Solanum tuberosum HOM05D002948 ORTHO05D003577 1.2e-10 70.1 53 60.4
Actinidia20472 Actinidia chinensis HOM05D002948 ORTHO05D003577 1.6e-10 69.7 57 56.1
arahy.Tifrunner.gnm1.ann1.C8NIIA Arachis hypogaea HOM05D002948 ORTHO05D003577 1.6e-10 69.7 56 58.9
arahy.Tifrunner.gnm1.ann1.YG2Q7Y Arachis hypogaea HOM05D002948 ORTHO05D003577 1.6e-10 69.7 56 58.9
Cfa005115 Carpinus fangiana HOM05D002948 ORTHO05D003577 1.6e-10 69.7 56 57.1
CiPaw.05G073700 Carya illinoinensis HOM05D002948 ORTHO05D003577 1.6e-10 69.7 56 57.1
RcHm_v2.0_Chr6g0268211 Rosa chinensis HOM05D002948 ORTHO05D003577 1.6e-10 69.7 49 65.3
SalBow6G3895 Salvia bowleyana HOM05D002948 ORTHO05D003577 1.6e-10 69.7 53 60.4
THA.LOC104804343 Tarenaya hassleriana HOM05D002948 ORTHO05D003577 1.6e-10 69.7 51 62.7
THA.LOC104807291 Tarenaya hassleriana HOM05D002948 ORTHO05D003577 1.6e-10 69.7 51 62.7
Glyma.06G007500 Glycine max HOM05D002948 ORTHO05D003577 2.1e-10 69.3 55 63.6
Oeu002952.1 Olea europaea HOM05D002948 ORTHO05D003577 2.1e-10 69.3 54 57.4
Oeu055637.1 Olea europaea HOM05D002948 ORTHO05D003577 2.1e-10 69.3 53 60.4
Peaxi162Scf00016g00007 Petunia axillaris HOM05D002948 ORTHO05D003577 2.1e-10 69.3 49 61.2
Psat7g140360 Pisum sativum HOM05D002948 ORTHO05D003577 2.1e-10 69.3 55 61.8
TWI75G1141 Tripterygium wilfordii HOM05D002948 ORTHO05D003577 2.1e-10 69.3 49 63.3
Aqoxy5G01475 Aquilegia oxysepala HOM05D002948 ORTHO05D003577 2.8e-10 68.9 56 51.8
Dinv41995 Davidia involucrata HOM05D002948 ORTHO05D003577 2.8e-10 68.9 50 62.0
Migut.N01279 Erythranthe guttata HOM05D002948 ORTHO05D003577 2.8e-10 68.9 52 59.6
FvH4_2g10570 Fragaria vesca HOM05D002948 ORTHO05D003577 2.8e-10 68.9 49 61.2
FAN15G0007 Fragaria x ananassa HOM05D002948 ORTHO05D003577 2.8e-10 68.9 49 61.2
FAN20G1999 Fragaria x ananassa HOM05D002948 ORTHO05D003577 2.8e-10 68.9 49 61.2
FAN24G2709 Fragaria x ananassa HOM05D002948 ORTHO05D003577 2.8e-10 68.9 49 61.2
Lalb_Chr19g0138971 Lupinus albus HOM05D002948 ORTHO05D003577 2.8e-10 68.9 56 53.6
TAR628G1095 Trochodendron aralioides HOM05D002948 ORTHO05D003577 2.8e-10 68.9 56 55.4
CSS0024054 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 3.6e-10 68.6 47 63.8
CSS0028985 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 3.6e-10 68.6 47 63.8
AUR62016840 Chenopodium quinoa HOM05D002948 ORTHO05D003577 3.6e-10 68.6 53 58.5
ECA240G1699 Erigeron canadensis HOM05D002948 ORTHO05D003577 3.6e-10 68.6 49 63.3
Lj5P189T22 Lonicera japonica HOM05D002948 ORTHO05D003577 3.6e-10 68.6 49 61.2
MD05G1055300 Malus domestica HOM05D002948 ORTHO05D003577 3.6e-10 68.6 49 67.3
Nitab4.5_0001317g0070 Nicotiana tabacum HOM05D002948 ORTHO05D003577 3.6e-10 68.6 53 58.5
Nitab4.5_0010630g0010 Nicotiana tabacum HOM05D002948 ORTHO05D003577 3.6e-10 68.6 53 58.5
QL11p046480 Quercus lobata HOM05D002948 ORTHO05D003577 3.6e-10 68.6 54 57.4
TAR376G0314 Trochodendron aralioides HOM05D002948 ORTHO05D003577 3.6e-10 68.6 56 55.4
GSVIVG01024167001 Vitis vinifera HOM05D002948 ORTHO05D003577 3.6e-10 68.6 49 63.3
BcaNung07079 Brassica carinata HOM05D002948 ORTHO05D003577 4.7e-10 68.2 47 66.0
A03p63100 Brassica napus HOM05D002948 ORTHO05D003577 4.7e-10 68.2 47 66.0
C07p60730 Brassica napus HOM05D002948 ORTHO05D003577 4.7e-10 68.2 47 66.0
BolC7t46502H Brassica oleracea HOM05D002948 ORTHO05D003577 4.7e-10 68.2 47 66.0
BraA03t15385Z Brassica rapa HOM05D002948 ORTHO05D003577 4.7e-10 68.2 47 66.0
CSS0006469 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 4.7e-10 68.2 49 63.3
CSS0040307 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 4.7e-10 68.2 49 63.3
CiPaw.06G127900 Carya illinoinensis HOM05D002948 ORTHO05D003577 4.7e-10 68.2 56 57.1
Dinv23451 Davidia involucrata HOM05D002948 ORTHO05D003577 4.7e-10 68.2 49 61.2
MD10G1062500 Malus domestica HOM05D002948 ORTHO05D003577 4.7e-10 68.2 49 65.3
CANSAT11G0625 Cannabis sativa HOM05D002948 ORTHO05D003577 6.2e-10 67.8 49 57.1
Ca_20935_v3 Cicer arietinum L. HOM05D002948 ORTHO05D003577 6.2e-10 67.8 49 61.2
FAN06G4601 Fragaria x ananassa HOM05D002948 ORTHO05D003577 6.2e-10 67.8 49 61.2
FAN27G1962 Fragaria x ananassa HOM05D002948 ORTHO05D003577 6.2e-10 67.8 49 59.2
Nn5g29243 Nelumbo nucifera HOM05D002948 ORTHO05D003577 6.2e-10 67.8 56 53.6
Prupe.8G083100 Prunus persica HOM05D002948 ORTHO05D003577 6.2e-10 67.8 49 67.3
PGR042G2860 Punica granatum HOM05D002948 ORTHO05D003577 6.2e-10 67.8 49 59.2
TPR.G7028 Trifolium pratense HOM05D002948 ORTHO05D003577 6.2e-10 67.8 53 64.2
BcaB03g16368 Brassica carinata HOM05D002948 ORTHO05D003577 8.1e-10 67.4 55 56.4
Ciclev10027873m.g Citrus clementina HOM05D002948 ORTHO05D003577 8.1e-10 67.4 49 57.1
AL7G16490 Arabidopsis lyrata HOM05D002948 ORTHO05D003577 1.1e-09 67.0 47 63.8
Carub.0007s0558 Capsella rubella HOM05D002948 ORTHO05D003577 1.1e-09 67.0 47 63.8
CARHR106720 Cardamine hirsuta HOM05D002948 ORTHO05D003577 1.1e-09 67.0 54 57.4
CARHR243010 Cardamine hirsuta HOM05D002948 ORTHO05D003577 1.1e-09 67.0 47 63.8
CDE02G0749 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 1.1e-09 67.0 56 57.1
CDE09G0099 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 1.1e-09 67.0 56 57.1
Duzib132G0750 Durio zibethinus HOM05D002948 ORTHO05D003577 1.1e-09 67.0 56 50.0
Migut.B00171 Erythranthe guttata HOM05D002948 ORTHO05D003577 1.1e-09 67.0 54 53.7
Gohir.D13G096600 Gossypium hirsutum HOM05D002948 ORTHO05D003577 1.1e-09 67.0 53 52.8
Gorai.002G149300 Gossypium raimondii HOM05D002948 ORTHO05D003577 1.1e-09 67.0 53 52.8
Hma1.2p1_0032F.1_g020070 Hydrangea macrophylla HOM05D002948 ORTHO05D003577 1.1e-09 67.0 49 61.2
MBI05_g16275_MAGBIO Magnolia biondii HOM05D002948 ORTHO05D003577 1.1e-09 67.0 49 61.2
Nn6g32257 Nelumbo nucifera HOM05D002948 ORTHO05D003577 1.1e-09 67.0 56 51.8
Ah.01g018720 Amaranthus hybridus HOM05D002948 ORTHO05D003577 1.4e-09 66.6 54 53.7
Lalb_Chr03g0025331 Lupinus albus HOM05D002948 ORTHO05D003577 1.4e-09 66.6 55 52.7
ClCG11G003830 Citrullus lanatus HOM05D002948 ORTHO05D003577 1.8e-09 66.2 49 61.2
Duzib052G1212 Durio zibethinus HOM05D002948 ORTHO05D003577 1.8e-09 66.2 56 48.2
Thhalv10024529m.g Eutrema salsugineum HOM05D002948 ORTHO05D003577 1.8e-09 66.2 49 59.2
Thecc.02G074500 Theobroma cacao HOM05D002948 ORTHO05D003577 1.8e-09 66.2 53 50.9
COL.COLO4_00023 Corchorus olitorius HOM05D002948 ORTHO05D003577 2.3e-09 65.9 56 48.2
Duzib248G1070 Durio zibethinus HOM05D002948 ORTHO05D003577 2.3e-09 65.9 53 52.8
Gohir.A13G091000 Gossypium hirsutum HOM05D002948 ORTHO05D003577 2.3e-09 65.9 53 50.9
Atru.chr5.3152 Acer truncatum HOM05D002948 ORTHO05D003577 3.1e-09 65.5 49 55.1
Atru.chr5.3166 Acer truncatum HOM05D002948 ORTHO05D003577 3.1e-09 65.5 49 55.1
AL3G52690 Arabidopsis lyrata HOM05D002948 ORTHO05D003577 3.1e-09 65.5 47 61.7
AT2G16500 Arabidopsis thaliana HOM05D002948 ORTHO05D003577 3.1e-09 65.5 47 61.7
MSTRG.20037 Avicennia marina HOM05D002948 ORTHO05D003577 3.1e-09 65.5 56 58.9
MSTRG.5424 Avicennia marina HOM05D002948 ORTHO05D003577 3.1e-09 65.5 56 53.6
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 3.1e-09 65.5 47 63.8
Carub.0003s3028 Capsella rubella HOM05D002948 ORTHO05D003577 3.1e-09 65.5 47 61.7
MELO3C023359.2 Cucumis melo HOM05D002948 ORTHO05D003577 3.1e-09 65.5 49 61.2
CsaV3_2G015310 Cucumis sativus L. HOM05D002948 ORTHO05D003577 3.1e-09 65.5 49 61.2
Glyma.04G007700 Glycine max HOM05D002948 ORTHO05D003577 3.1e-09 65.5 54 61.1
Lj1g0012396 Lotus japonicus HOM05D002948 ORTHO05D003577 3.1e-09 65.5 53 62.3
COL.COLO4_20154 Corchorus olitorius HOM05D002948 ORTHO05D003577 4.0e-09 65.1 54 51.9
Sp3g29770 Schrenkiella parvula HOM05D002948 ORTHO05D003577 4.0e-09 65.1 47 59.6
Sp7g32490 Schrenkiella parvula HOM05D002948 ORTHO05D003577 4.0e-09 65.1 47 59.6
Sc18g0005400 Simmondsia chinensis HOM05D002948 ORTHO05D003577 4.0e-09 65.1 49 59.2
AT4G34710 Arabidopsis thaliana HOM05D002948 ORTHO05D003577 5.2e-09 64.7 47 61.7
Cpa.g.sc150.13 Carica papaya HOM05D002948 ORTHO05D003577 5.2e-09 64.7 53 60.4
Haze_02235 Corylus avellana HOM05D002948 ORTHO05D003577 5.2e-09 64.7 47 61.7
Rhsim11G0184100 Rhododendron simsii HOM05D002948 ORTHO05D003577 5.2e-09 64.7 47 61.7
SHI43297 Sapria himalayana HOM05D002948 ORTHO05D003577 5.2e-09 64.7 54 53.7
MSTRG.16854 Avicennia marina HOM05D002948 ORTHO05D003577 6.8e-09 64.3 48 58.3
Thhalv10022578m.g Eutrema salsugineum HOM05D002948 ORTHO05D003577 6.8e-09 64.3 47 59.6
Gohir.A04G123600 Gossypium hirsutum HOM05D002948 ORTHO05D003577 6.8e-09 64.3 47 59.6
Gorai.012G154100 Gossypium raimondii HOM05D002948 ORTHO05D003577 6.8e-09 64.3 47 59.6
Aa31LG8G13820 Aethionema arabicum HOM05D002948 ORTHO05D003577 8.9e-09 63.9 47 61.7
BcaB03g11816 Brassica carinata HOM05D002948 ORTHO05D003577 8.9e-09 63.9 47 61.7
BcaC01g00879 Brassica carinata HOM05D002948 ORTHO05D003577 8.9e-09 63.9 47 61.7
A01p03800 Brassica napus HOM05D002948 ORTHO05D003577 8.9e-09 63.9 46 58.7
A08p16630 Brassica napus HOM05D002948 ORTHO05D003577 8.9e-09 63.9 47 61.7
C03p85520 Brassica napus HOM05D002948 ORTHO05D003577 8.9e-09 63.9 47 61.7
BolC3t20839H Brassica oleracea HOM05D002948 ORTHO05D003577 8.9e-09 63.9 47 61.7
BraA01t00365Z Brassica rapa HOM05D002948 ORTHO05D003577 8.9e-09 63.9 46 58.7
BraA08t33628Z Brassica rapa HOM05D002948 ORTHO05D003577 8.9e-09 63.9 47 61.7
Gohir.D04G165600 Gossypium hirsutum HOM05D002948 ORTHO05D003577 8.9e-09 63.9 47 59.6
PSO170G0240 Papaver somniferum HOM05D002948 ORTHO05D003577 8.9e-09 63.9 56 51.8
PSO210G1300 Papaver somniferum HOM05D002948 ORTHO05D003577 8.9e-09 63.9 56 51.8
BcaNung05380 Brassica carinata HOM05D002948 ORTHO05D003577 1.2e-08 63.5 47 57.4
SalBow3G2063 Salvia bowleyana HOM05D002948 ORTHO05D003577 1.2e-08 63.5 49 61.2
Sed0015136 Sechium edule HOM05D002948 ORTHO05D003577 1.2e-08 63.5 49 59.2
unitig_0.g48 Utricularia gibba HOM05D002948 ORTHO05D003577 1.2e-08 63.5 56 53.6
BcaNung00669 Brassica carinata HOM05D002948 ORTHO05D003577 1.5e-08 63.2 47 59.6
Gohir.D04G165700 Gossypium hirsutum HOM05D002948 ORTHO05D003577 1.5e-08 63.2 55 49.1
Lj3g0025349 Lotus japonicus HOM05D002948 ORTHO05D003577 1.5e-08 63.2 50 58.0
Os06g0131300 Oryza sativa ssp. japonica HOM05D002948 ORTHO05D003577 1.5e-08 63.2 49 63.3
SGA_v2.0_scaffold207G41879 Striga asiatica HOM05D002948 ORTHO05D003577 1.5e-08 63.2 45 62.2
ATR0149G028 Amborella trichopoda HOM05D002948 ORTHO05D003577 2.0e-08 62.8 45 64.4
BcaB03g15553 Brassica carinata HOM05D002948 ORTHO05D003577 2.6e-08 62.4 65 44.6
BcaNung05379 Brassica carinata HOM05D002948 ORTHO05D003577 2.6e-08 62.4 47 57.4
BolC1t00399H Brassica oleracea HOM05D002948 ORTHO05D003577 2.6e-08 62.4 47 57.4
HPP92_020655 Vanilla planifolia HOM05D002948 ORTHO05D003577 2.6e-08 62.4 56 50.0
Zm00001eb378210 Zea mays HOM05D002948 ORTHO05D003577 2.6e-08 62.4 47 63.8
BcaNung00671 Brassica carinata HOM05D002948 ORTHO05D003577 3.4e-08 62.0 46 58.7
C01p04110 Brassica napus HOM05D002948 ORTHO05D003577 3.4e-08 62.0 46 58.7
unitig_60.g25437 Utricularia gibba HOM05D002948 ORTHO05D003577 4.4e-08 61.6 56 50.0
VMungo1309G2352 Vigna mungo HOM05D002948 ORTHO05D003577 5.8e-08 61.2 57 57.9
Thecc.04G202400 Theobroma cacao HOM05D002948 ORTHO05D003577 9.9e-08 60.5 53 52.8
A01p03790 Brassica napus HOM05D002948 ORTHO05D003577 1.7e-07 59.7 47 55.3
BraA01t00364Z Brassica rapa HOM05D002948 ORTHO05D003577 1.7e-07 59.7 47 55.3
Phvul.009G002500 Phaseolus vulgaris HOM05D002948 ORTHO05D003577 3.7e-07 58.5 49 55.1
SEGI_07639 Sequoiadendron giganteum HOM05D002948 ORTHO05D003577 3.7e-07 58.5 48 52.1
CDE04G0128 Ceratophyllum demersum HOM05D002948 ORTHO05D006079 6.4e-07 57.8 47 53.2
Lalb_Chr01g0002141 Lupinus albus HOM05D002948 ORTHO05D003577 6.4e-07 57.8 49 57.1
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 8.3e-07 57.4 45 57.8
Os04g0107600 Oryza sativa ssp. japonica HOM05D002948 ORTHO05D003577 3.2e-06 55.5 47 48.9
PGR142G4254 Punica granatum HOM05D002948 ORTHO05D003577 4.1e-06 55.1 53 43.4
PGR142G0309 Punica granatum HOM05D002948 ORTHO05D003577 5.4e-06 54.7 53 41.5
Zm00001eb185400 Zea mays HOM05D002948 ORTHO05D003577 5.4e-06 54.7 47 46.8


User provided reference genes

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