Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu010462.1 Olea europaea HOM05D002112 ORTHO05D005830 1.4e-165 586.3 300 100.0
Cc09_g04780 Coffea canephora HOM05D002112 ORTHO05D005830 1.7e-115 419.9 289 74.0
Atru.chr4.1269 Acer truncatum HOM05D002112 ORTHO05D005830 1.0e-112 410.6 288 75.0
MSTRG.24953 Avicennia marina HOM05D002112 ORTHO05D005830 1.3e-112 410.2 260 80.0
vmacro13897 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 8.7e-112 407.5 288 72.9
Dinv17874 Davidia involucrata HOM05D002112 ORTHO05D005830 1.9e-111 406.4 289 75.4
Nitab4.5_0000632g0010 Nicotiana tabacum HOM05D002112 ORTHO05D005830 1.9e-111 406.4 291 71.1
SGA_v2.0_scaffold16G07839 Striga asiatica HOM05D002112 ORTHO05D005830 1.3e-110 403.7 289 73.0
Rhsim07G0082300 Rhododendron simsii HOM05D002112 ORTHO05D005830 2.8e-110 402.5 288 71.9
CiPaw.01G095700 Carya illinoinensis HOM05D002112 ORTHO05D005830 3.7e-110 402.1 288 74.7
Lj2A342T117 Lonicera japonica HOM05D002112 ORTHO05D005830 4.8e-110 401.7 288 72.6
SalBow5G0693 Salvia bowleyana HOM05D002112 ORTHO05D005830 1.1e-109 400.6 285 71.9
Migut.M02025 Erythranthe guttata HOM05D002112 ORTHO05D005830 9.0e-109 397.5 290 73.8
Solyc02g082030.3 Solanum lycopersicum HOM05D002112 ORTHO05D005830 1.2e-108 397.1 291 69.4
Sopen02g026670 Solanum pennellii HOM05D002112 ORTHO05D005830 1.2e-108 397.1 291 69.4
Actinidia22156 Actinidia chinensis HOM05D002112 ORTHO05D005830 1.5e-108 396.7 288 73.3
Haze_01451 Corylus avellana HOM05D002112 ORTHO05D005830 1.5e-108 396.7 288 73.6
Gohir.A10G139900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.7e-107 393.3 288 72.2
PGSC0003DMG400007324 Solanum tuberosum HOM05D002112 ORTHO05D005830 5.0e-107 391.7 291 68.4
Peaxi162Scf00276g01115 Petunia axillaris HOM05D002112 ORTHO05D005830 6.5e-107 391.3 288 69.8
Ciclev10020598m.g Citrus clementina HOM05D002112 ORTHO05D005830 8.4e-107 391.0 288 71.2
Peaxi162Scf00036g02120 Petunia axillaris HOM05D002112 ORTHO05D005830 8.4e-107 391.0 288 69.4
Gohir.D10G126900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.1e-106 390.6 288 71.9
GSVIVG01010853001 Vitis vinifera HOM05D002112 ORTHO05D005830 1.1e-106 390.6 288 71.9
Gohir.A02G114100 Gossypium hirsutum HOM05D002112 ORTHO05D005830 4.2e-106 388.7 288 71.2
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 5.5e-106 388.3 290 70.3
Gorai.011G139800 Gossypium raimondii HOM05D002112 ORTHO05D005830 5.5e-106 388.3 288 71.9
Sabra17G0015800 Salix brachista HOM05D002112 ORTHO05D005830 5.5e-106 388.3 288 73.3
Gohir.A08G075500 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.2e-105 387.1 288 71.2
THA.LOC104817851 Tarenaya hassleriana HOM05D002112 ORTHO05D005830 1.6e-105 386.7 255 76.1
Sabra17G0000800 Salix brachista HOM05D002112 ORTHO05D005830 2.7e-105 386.0 288 72.6
Lj6g0007258 Lotus japonicus HOM05D002112 ORTHO05D005830 4.6e-105 385.2 288 70.8
Sabra07G0106900 Salix brachista HOM05D002112 ORTHO05D005830 4.6e-105 385.2 255 78.4
Sabra07G0118800 Salix brachista HOM05D002112 ORTHO05D005830 4.6e-105 385.2 255 78.4
AUR62031652 Chenopodium quinoa HOM05D002112 ORTHO05D005830 6.1e-105 384.8 288 71.2
QL10p051275 Quercus lobata HOM05D002112 ORTHO05D005830 6.1e-105 384.8 290 71.4
CsaV3_7G002030 Cucumis sativus L. HOM05D002112 ORTHO05D005830 1.0e-104 384.0 290 69.3
Thhalv10020922m.g Eutrema salsugineum HOM05D002112 ORTHO05D005830 1.0e-104 384.0 288 69.4
Nitab4.5_0003902g0080 Nicotiana tabacum HOM05D002112 ORTHO05D005830 1.0e-104 384.0 238 78.6
Manes.04G047300 Manihot esculenta HOM05D002112 ORTHO05D005830 1.3e-104 383.6 290 69.3
Potri.007G131700 Populus trichocarpa HOM05D002112 ORTHO05D005830 1.3e-104 383.6 260 76.5
DCAR_003742 Daucus carota HOM05D002112 ORTHO05D005830 1.8e-104 383.3 290 69.7
Eucgr.I00215 Eucalyptus grandis HOM05D002112 ORTHO05D005830 1.8e-104 383.3 256 74.6
Lalb_Chr04g0249531 Lupinus albus HOM05D002112 ORTHO05D005830 2.3e-104 382.9 291 67.7
Thecc.04G174100 Theobroma cacao HOM05D002112 ORTHO05D005830 2.3e-104 382.9 288 70.8
Aa31LG8G7130 Aethionema arabicum HOM05D002112 ORTHO05D005830 3.0e-104 382.5 288 68.1
Hma1.2p1_2907F.1_g330140 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 3.0e-104 382.5 296 67.6
Lj1A1151T82 Lonicera japonica HOM05D002112 ORTHO05D005830 3.0e-104 382.5 289 68.9
Sc19g0002800 Simmondsia chinensis HOM05D002112 ORTHO05D005830 3.9e-104 382.1 288 70.5
COL.COLO4_08219 Corchorus olitorius HOM05D002112 ORTHO05D005830 8.7e-104 380.9 239 80.3
MELO3C015704.2 Cucumis melo HOM05D002112 ORTHO05D005830 1.5e-103 380.2 290 69.0
ClCG09G018870 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.9e-103 379.8 290 69.0
Lsat_1_v5_gn_3_102740 Lactuca sativa HOM05D002112 ORTHO05D005830 4.3e-103 378.6 293 69.3
MD04G1045800 Malus domestica HOM05D002112 ORTHO05D005830 4.3e-103 378.6 252 75.8
Lalb_Chr17g0347631 Lupinus albus HOM05D002112 ORTHO05D005830 5.7e-103 378.3 290 66.6
Duzib151G0469 Durio zibethinus HOM05D002112 ORTHO05D005830 7.4e-103 377.9 288 69.8
Prupe.1G198700 Prunus persica HOM05D002112 ORTHO05D005830 7.4e-103 377.9 252 75.8
AL3G34040 Arabidopsis lyrata HOM05D002112 ORTHO05D005830 1.3e-102 377.1 282 68.8
Carub.0003s2027 Capsella rubella HOM05D002112 ORTHO05D005830 2.8e-102 375.9 288 68.4
Actinidia04201 Actinidia chinensis HOM05D002112 ORTHO05D005830 3.7e-102 375.6 320 65.6
AT3G20320 Arabidopsis thaliana HOM05D002112 ORTHO05D005830 3.7e-102 375.6 282 69.1
Potri.017G026100 Populus trichocarpa HOM05D002112 ORTHO05D005830 3.7e-102 375.6 288 70.8
Sed0017575 Sechium edule HOM05D002112 ORTHO05D005830 4.8e-102 375.2 290 68.6
EL10Ac2g03438 Beta vulgaris HOM05D002112 ORTHO05D005830 1.4e-101 373.6 289 68.9
Sp3g18350 Schrenkiella parvula HOM05D002112 ORTHO05D005830 1.8e-101 373.2 282 68.4
CAN.G809.29 Capsicum annuum HOM05D002112 ORTHO05D005830 9.0e-101 370.9 299 64.2
Ca_06168_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 9.0e-101 370.9 290 68.6
Ca_06185_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 9.0e-101 370.9 290 68.6
HanXRQChr02g0033051 Helianthus annuus HOM05D002112 ORTHO05D005830 9.0e-101 370.9 274 69.7
RcHm_v2.0_Chr2g0118821 Rosa chinensis HOM05D002112 ORTHO05D005830 9.0e-101 370.9 288 68.4
arahy.Tifrunner.gnm1.ann1.9N9T88 Arachis hypogaea HOM05D002112 ORTHO05D005830 1.2e-100 370.5 267 71.2
arahy.Tifrunner.gnm1.ann1.PNXW1P Arachis hypogaea HOM05D002112 ORTHO05D005830 1.2e-100 370.5 267 71.2
CARHR095970 Cardamine hirsuta HOM05D002112 ORTHO05D005830 1.2e-100 370.5 288 67.4
ECA246G0582 Erigeron canadensis HOM05D002112 ORTHO05D005830 1.5e-100 370.2 223 81.6
Medtr5g088340 Medicago truncatula HOM05D002112 ORTHO05D005830 1.5e-100 370.2 290 66.9
Glyma.20G048400 Glycine max HOM05D002112 ORTHO05D005830 2.6e-100 369.4 283 66.1
TPR.G11324 Trifolium pratense HOM05D002112 ORTHO05D005830 3.4e-100 369.0 290 65.9
TAR369G0031 Trochodendron aralioides HOM05D002112 ORTHO05D005830 3.4e-100 369.0 288 69.8
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 4.5e-100 368.6 282 67.4
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 5.9e-100 368.2 282 67.7
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 5.9e-100 368.2 282 67.7
BolC5t33124H Brassica oleracea HOM05D002112 ORTHO05D005830 7.7e-100 367.9 282 67.4
FAN26G0200 Fragaria x ananassa HOM05D002112 ORTHO05D005830 7.7e-100 367.9 244 76.2
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 1.0e-99 367.5 282 67.4
Glyma.13G074600 Glycine max HOM05D002112 ORTHO05D005830 1.0e-99 367.5 284 65.5
Nn2g10363 Nelumbo nucifera HOM05D002112 ORTHO05D005830 1.0e-99 367.5 250 74.0
VMungo0540G0891 Vigna mungo HOM05D002112 ORTHO05D005830 5.0e-99 365.2 282 65.6
Ca_04336_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 6.5e-99 364.8 288 66.0
HanXRQChr12g0380031 Helianthus annuus HOM05D002112 ORTHO05D005830 6.5e-99 364.8 293 65.9
CANSAT78G1637 Cannabis sativa HOM05D002112 ORTHO05D005830 1.1e-98 364.0 252 72.6
FvH4_1g23450 Fragaria vesca HOM05D002112 ORTHO05D005830 1.1e-98 364.0 288 67.7
FAN19G2557 Fragaria x ananassa HOM05D002112 ORTHO05D005830 1.1e-98 364.0 288 67.7
TWI38G0996 Tripterygium wilfordii HOM05D002112 ORTHO05D005830 1.1e-98 364.0 290 67.9
FAN23G2661 Fragaria x ananassa HOM05D002112 ORTHO05D005830 1.4e-98 363.6 288 67.4
BcaB06g26098 Brassica carinata HOM05D002112 ORTHO05D005377 1.9e-98 363.2 282 66.7
BcaC09g48987 Brassica carinata HOM05D002112 ORTHO05D005377 1.9e-98 363.2 225 78.2
BolC1t04335H Brassica oleracea HOM05D002112 ORTHO05D005377 1.9e-98 363.2 225 78.2
Phvul.006G021000 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 2.5e-98 362.8 288 64.6
Psat2g021160 Pisum sativum HOM05D002112 ORTHO05D005830 3.2e-98 362.5 290 64.5
unitig_748.g7486 Utricularia gibba HOM05D002112 ORTHO05D005830 2.7e-97 359.4 245 75.1
C01p43770 Brassica napus HOM05D002112 ORTHO05D005830 6.1e-97 358.2 250 72.0
QL11p031638 Quercus lobata HOM05D002112 ORTHO05D005830 6.1e-97 358.2 288 65.3
Aqoxy7G04120 Aquilegia oxysepala HOM05D002112 ORTHO05D005830 1.4e-96 357.1 276 66.3
BcaB04g20660 Brassica carinata HOM05D002112 ORTHO05D005830 2.3e-96 356.3 247 71.7
BraA01t03533Z Brassica rapa HOM05D002112 ORTHO05D005830 6.7e-96 354.8 225 76.4
A01p34360 Brassica napus HOM05D002112 ORTHO05D005830 1.1e-95 354.0 225 76.4
Medtr3g040090 Medicago truncatula HOM05D002112 ORTHO05D005830 1.1e-95 354.0 290 65.9
MBI14_g20102_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005830 5.7e-95 351.7 250 69.2
ClCG02G003310 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.7e-94 350.1 288 65.3
Ah.14g085620 Amaranthus hybridus HOM05D002112 ORTHO05D005830 3.7e-94 349.0 311 62.4
CiPaw.06G167000 Carya illinoinensis HOM05D002112 ORTHO05D005830 4.8e-94 348.6 289 64.0
PSO339G3553 Papaver somniferum HOM05D002112 ORTHO05D005830 8.2e-94 347.8 250 70.4
ATR0559G336 Amborella trichopoda HOM05D002112 ORTHO05D005830 1.4e-93 347.1 289 63.7
Glyma.14G040300 Glycine max HOM05D002112 ORTHO05D005830 1.4e-93 347.1 291 62.2
Dinv21066 Davidia involucrata HOM05D002112 ORTHO05D005830 3.4e-92 342.4 289 65.7
CDE08G1601 Ceratophyllum demersum HOM05D002112 ORTHO05D005830 1.3e-91 340.5 290 60.3
Psat5g187680 Pisum sativum HOM05D002112 ORTHO05D005830 2.2e-91 339.7 288 63.9
MD13G1257900 Malus domestica HOM05D002112 ORTHO05D005830 2.5e-90 336.3 259 68.7
Phvul.008G205800 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 9.4e-90 334.3 291 61.9
VMungo0647G1998 Vigna mungo HOM05D002112 ORTHO05D005830 1.2e-89 334.0 290 62.4
Haze_10243 Corylus avellana HOM05D002112 ORTHO05D005830 5.7e-87 325.1 205 79.5
Peaxi162Scf00580g00069 Petunia axillaris HOM05D002112 ORTHO05D005830 7.4e-87 324.7 241 69.3
Zm00001eb362140 Zea mays HOM05D002112 ORTHO05D005830 2.8e-86 322.8 235 65.1
Os01g0974000 Oryza sativa ssp. japonica HOM05D002112 ORTHO05D005830 4.1e-85 318.9 205 72.7
Cfa004646 Carpinus fangiana HOM05D002112 ORTHO05D005830 2.0e-84 316.6 210 75.2
Zm00001eb139760 Zea mays HOM05D002112 ORTHO05D005830 2.0e-84 316.6 250 62.0
Duzib212G0454 Durio zibethinus HOM05D002112 ORTHO05D005830 8.5e-83 311.2 246 69.5
SHI29120 Sapria himalayana HOM05D002112 ORTHO05D005830 7.2e-82 308.1 278 56.8
TAR623G0168 Trochodendron aralioides HOM05D002112 ORTHO05D005830 1.1e-77 294.3 242 65.7
SEGI_07155 Sequoiadendron giganteum HOM05D002112 ORTHO05D005830 4.1e-77 292.4 253 57.3
Mapoly0038s0049 Marchantia polymorpha HOM05D002112 ORTHO05D005830 4.2e-74 282.3 227 59.0
QL02p069440 Quercus lobata HOM05D002112 ORTHO05D005830 1.0e-72 277.7 215 67.0
vmacro12410 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 1.8e-72 276.9 169 82.8
Pp3c3_12480 Physcomitrium patens HOM05D002112 ORTHO05D005830 2.0e-71 273.5 248 52.8
Pp3c12_4060 Physcomitrium patens HOM05D002112 ORTHO05D005830 2.6e-71 273.1 248 53.6
HPP92_018143 Vanilla planifolia HOM05D002112 ORTHO05D005830 2.0e-68 263.5 202 64.4
SMO356G0377 Selaginella moellendorffii HOM05D002112 ORTHO05D005830 4.2e-66 255.8 205 57.6
CBR_g24153 Chara braunii HOM05D002112 ORTHO05D005830 9.4e-66 254.6 208 58.2
AagrBONN_evm.TU.Sc2ySwM_362.2463 Anthoceros agrestis HOM05D002112 ORTHO05D005830 2.1e-65 253.4 210 56.7
PSO151G0006 Papaver somniferum HOM05D002112 ORTHO05D005830 2.8e-57 226.5 284 48.9
Hund03181 Selenicereus undatus HOM05D002112 ORTHO05D005830 2.6e-55 219.9 184 62.5
MCO07G431 Micromonas commoda HOM05D002112 ORTHO05D005830 1.1e-53 214.5 217 47.9
Sc07g0004100 Simmondsia chinensis HOM05D002112 ORTHO05D005830 1.3e-51 207.6 181 65.2
Glyma.02G275800 Glycine max HOM05D002112 ORTHO05D005830 4.7e-49 199.1 175 61.1
Cre16.g694400 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D005830 7.8e-44 181.8 199 47.2
PRCOL_00002736 Prasinoderma coloniale HOM05D002112 ORTHO05D005830 5.0e-43 179.1 201 45.8
Cpa.g.c39485 Carica papaya HOM05D002112 ORTHO05D005830 4.3e-34 149.4 88 79.5
Gohir.A08G072300 Gossypium hirsutum HOM05D002112 ORTHO05D010805 5.6e-18 95.9 61 72.1
Sc07g0004110 Simmondsia chinensis HOM05D002112 ORTHO05D010805 2.2e-14 84.0 49 81.6
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.3e-11 74.7 69 55.1
Cre09.g395028 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D143200 3.3e-10 70.1 105 38.1


User provided reference genes

Program Settings