Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 4.2e-66 254.6 132 100.0
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.3e-56 223.0 125 90.4
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.3e-56 223.0 132 86.4
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 2.3e-56 222.2 125 89.6
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.1e-56 221.1 126 89.7
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 5.1e-56 221.1 125 88.8
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 6.7e-56 220.7 125 89.6
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 6.7e-56 220.7 126 89.7
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 8.7e-56 220.3 126 88.9
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 8.7e-56 220.3 131 85.5
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.1e-55 219.9 124 90.3
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 1.5e-55 219.5 126 87.3
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.5e-55 219.5 127 89.0
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.9e-55 219.2 125 89.6
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 2.5e-55 218.8 132 86.4
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 3.3e-55 218.4 124 88.7
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 4.3e-55 218.0 123 88.6
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 4.3e-55 218.0 129 86.8
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 4.3e-55 218.0 125 88.8
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 5.6e-55 217.6 124 89.5
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 5.6e-55 217.6 125 87.2
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 5.6e-55 217.6 125 88.8
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 5.6e-55 217.6 126 88.9
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 5.6e-55 217.6 125 88.0
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 7.4e-55 217.2 126 88.9
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 7.4e-55 217.2 125 89.6
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 7.4e-55 217.2 125 89.6
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 9.6e-55 216.9 127 85.8
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 9.6e-55 216.9 124 87.1
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.3e-54 216.5 126 86.5
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.3e-54 216.5 125 87.2
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.3e-54 216.5 129 86.0
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.3e-54 216.5 126 85.7
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.6e-54 216.1 125 87.2
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.6e-54 216.1 125 87.2
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 2.1e-54 215.7 125 87.2
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 2.1e-54 215.7 125 88.0
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 2.1e-54 215.7 126 85.7
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 2.1e-54 215.7 125 88.8
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 2.1e-54 215.7 126 85.7
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 2.8e-54 215.3 127 86.6
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 2.8e-54 215.3 127 86.6
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 2.8e-54 215.3 129 84.5
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.8e-54 215.3 125 87.2
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.8e-54 215.3 125 87.2
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 2.8e-54 215.3 125 86.4
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 2.8e-54 215.3 125 88.8
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 2.8e-54 215.3 125 87.2
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.8e-54 215.3 125 86.4
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.8e-54 215.3 125 89.6
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 3.7e-54 214.9 127 85.8
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.7e-54 214.9 128 85.2
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 4.8e-54 214.5 126 86.5
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 6.2e-54 214.2 126 86.5
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 6.2e-54 214.2 125 86.4
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 6.2e-54 214.2 125 87.2
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 6.2e-54 214.2 125 87.2
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 8.1e-54 213.8 125 87.2
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 8.1e-54 213.8 126 85.7
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-53 213.4 126 85.7
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.1e-53 213.4 125 86.4
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.4e-53 213.0 125 88.0
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.4e-53 213.0 127 85.0
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 1.4e-53 213.0 125 85.6
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 1.8e-53 212.6 124 87.1
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 1.8e-53 212.6 127 84.3
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.8e-53 212.6 125 85.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 2.4e-53 212.2 127 85.0
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 2.4e-53 212.2 125 86.4
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 3.1e-53 211.8 126 84.9
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 3.1e-53 211.8 127 84.3
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 3.1e-53 211.8 126 84.9
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 3.1e-53 211.8 126 84.9
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 3.1e-53 211.8 127 84.3
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.1e-53 211.8 125 87.2
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.1e-53 211.8 125 87.2
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 3.1e-53 211.8 125 86.4
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 5.3e-53 211.1 125 86.4
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 5.3e-53 211.1 126 85.7
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 5.3e-53 211.1 125 86.4
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 5.3e-53 211.1 125 86.4
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 5.3e-53 211.1 125 85.6
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 5.3e-53 211.1 125 84.8
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 5.3e-53 211.1 125 85.6
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 6.9e-53 210.7 125 85.6
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 6.9e-53 210.7 126 84.9
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 6.9e-53 210.7 126 84.9
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 9.0e-53 210.3 125 86.4
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 9.0e-53 210.3 125 86.4
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 9.0e-53 210.3 125 86.4
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 1.2e-52 209.9 128 82.0
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.2e-52 209.9 125 84.8
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.5e-52 209.5 127 81.9
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.5e-52 209.5 126 84.9
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 2.0e-52 209.1 126 84.1
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.0e-52 209.1 125 83.2
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 2.6e-52 208.8 126 84.1
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 2.6e-52 208.8 125 84.8
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.6e-52 208.8 129 81.4
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 3.4e-52 208.4 125 84.8
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 3.4e-52 208.4 125 84.0
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 3.4e-52 208.4 125 83.2
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 4.5e-52 208.0 125 84.8
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 9.9e-52 206.8 129 80.6
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.7e-51 206.1 125 84.0
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 1.7e-51 206.1 125 84.0
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.7e-51 206.1 125 84.0
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.7e-51 206.1 128 80.5
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 4.9e-51 204.5 125 82.4
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 1.1e-50 203.4 126 81.7
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.9e-50 202.6 124 81.5
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 2.1e-49 199.1 164 67.7
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.1e-49 199.1 141 75.2
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 7.9e-49 197.2 119 84.0
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.8e-48 196.1 131 76.3
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 3.0e-48 195.3 152 68.4
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 3.9e-48 194.9 145 75.2
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 5.1e-48 194.5 158 66.5
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 6.7e-48 194.1 124 79.8
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.1e-47 193.4 125 79.2
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 7.4e-47 190.7 124 75.8
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 9.6e-47 190.3 126 77.0
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-46 189.5 126 77.0
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.6e-46 189.5 126 77.0
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 2.1e-46 189.1 126 77.0
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 2.1e-46 189.1 108 88.0
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 2.1e-46 189.1 120 79.2
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 2.1e-46 189.1 125 75.2
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.8e-46 188.7 126 75.4
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 6.2e-46 187.6 126 75.4
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.4e-45 186.4 124 72.6
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 5.3e-45 184.5 106 87.7
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 6.9e-45 184.1 124 72.6
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 5.8e-44 181.0 123 71.5
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 2.9e-43 178.7 125 78.4
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.3e-40 169.1 117 76.1
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.5e-39 166.4 125 71.2
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 4.3e-39 164.9 126 68.3
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.3e-38 163.3 124 65.3
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.2e-36 156.8 123 64.2
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.3e-35 153.3 94 83.0
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 3.8e-35 151.8 100 76.0
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.1e-34 150.2 125 62.4
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.4e-34 149.8 100 75.0
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.9e-34 149.4 124 59.7
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.2e-34 148.7 123 61.8
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 5.5e-34 147.9 87 86.2
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.6e-33 146.4 125 57.6
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 3.6e-33 145.2 124 60.5
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 2.3e-32 142.5 123 61.0
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 3.0e-32 142.1 129 55.8
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.7e-31 137.9 94 69.1
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.4e-29 133.3 97 63.9
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 3.4e-28 128.6 78 82.1
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 3.4e-28 128.6 78 82.1
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 2.2e-27 125.9 77 80.5
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 8.5e-27 124.0 69 89.9
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.1e-26 123.6 95 60.0
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 2.7e-25 119.0 79 74.7
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.4e-24 116.7 68 86.8
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.1e-24 114.8 68 85.3
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 9.1e-21 104.0 78 66.7
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 5.0e-19 98.2 57 86.0
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 7.2e-18 94.4 69 68.1
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.6e-17 92.0 47 95.7
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 8.8e-16 87.4 55 78.2
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.5e-15 86.7 52 80.8
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.5e-15 86.7 56 75.0
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 3.3e-15 85.5 56 73.2
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 5.7e-15 84.7 125 38.4
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.4e-15 84.3 53 79.2
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 4.8e-14 81.6 54 72.2
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 8.2e-14 80.9 54 72.2
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 8.8e-08 60.8 40 70.0
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.2e-07 60.5 41 75.6
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 1.5e-07 60.1 31 93.5
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 9.7e-07 57.4 37 70.3
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 1.7e-06 56.6 37 70.3
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 4.8e-06 55.1 37 67.6


User provided reference genes

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