Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 2.3e-241 838.6 446 100.0
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 8.8e-193 677.2 451 79.8
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.2e-186 656.8 446 78.0
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 3.0e-185 652.1 451 77.4
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.1e-182 643.7 452 75.9
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 3.1e-182 642.1 439 77.4
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 5.3e-182 641.3 448 75.9
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 5.9e-181 637.9 453 76.8
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 5.9e-181 637.9 453 76.8
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 7.7e-181 637.5 453 76.6
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 2.9e-180 635.6 450 75.6
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 8.5e-180 634.0 442 76.2
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 3.2e-179 632.1 456 73.9
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.2e-178 630.2 447 75.6
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.7e-178 628.2 445 75.1
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.0e-177 627.1 446 75.1
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 2.3e-177 625.9 443 74.9
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 3.0e-177 625.5 453 74.0
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 5.2e-177 624.8 442 76.0
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 3.3e-176 622.1 451 73.4
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.7e-175 619.8 451 73.2
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.2e-175 619.4 452 74.1
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 4.8e-175 618.2 452 73.9
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 6.3e-175 617.8 445 73.9
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 8.2e-175 617.5 436 75.2
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.4e-174 616.7 453 74.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 5.3e-174 614.8 450 73.3
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 9.1e-174 614.0 461 71.8
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 3.5e-173 612.1 447 74.5
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.0e-172 610.5 443 73.8
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 2.9e-172 609.0 440 74.1
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.8e-172 608.6 440 72.7
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 5.0e-172 608.2 440 74.1
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 5.0e-172 608.2 437 73.7
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 6.5e-172 607.8 440 73.0
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.1e-171 607.1 440 73.0
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 1.5e-171 606.7 445 72.1
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.9e-171 606.3 437 73.7
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 2.5e-171 605.9 454 71.1
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 7.2e-171 604.4 438 73.5
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 9.4e-171 604.0 436 72.0
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.6e-170 603.2 449 74.2
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.6e-170 603.2 449 72.4
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 8.0e-170 600.9 448 71.4
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 8.0e-170 600.9 451 74.1
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.0e-169 600.5 436 71.1
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.8e-169 599.7 449 70.4
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 3.0e-169 599.0 447 71.4
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 4.0e-169 598.6 447 71.4
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 8.8e-169 597.4 439 74.0
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 2.0e-168 596.3 435 72.9
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.6e-168 595.9 445 71.7
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 6.3e-167 591.3 454 71.6
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.1e-166 590.5 399 76.2
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.1e-166 590.5 399 76.2
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.1e-166 590.5 446 71.5
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.4e-166 590.1 451 72.9
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.4e-166 589.3 431 71.9
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 7.0e-166 587.8 399 76.4
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 9.1e-166 587.4 468 70.5
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 4.5e-165 585.1 439 69.5
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.0e-164 583.9 461 72.0
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.3e-164 583.6 455 71.2
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 1.3e-164 583.6 438 70.8
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.9e-164 582.4 429 73.4
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 2.9e-164 582.4 444 72.5
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 5.5e-163 578.2 376 79.8
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 5.5e-163 578.2 444 69.8
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 5.5e-163 578.2 442 69.5
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.2e-162 577.0 452 69.2
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 2.1e-162 576.2 449 70.2
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 4.7e-162 575.1 447 68.7
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 6.1e-162 574.7 456 70.0
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.0e-161 573.9 447 68.7
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.8e-161 573.2 449 69.7
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.5e-160 570.1 447 67.8
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.3e-159 567.0 452 68.4
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.8e-159 565.8 455 67.5
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.7e-159 565.5 453 67.8
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.1e-158 563.9 448 67.4
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 2.4e-158 562.8 455 67.0
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 2.0e-157 559.7 461 66.4
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 4.5e-157 558.5 341 82.1
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 3.8e-156 555.4 401 71.6
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.5e-155 553.5 449 66.4
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 1.5e-155 553.5 449 66.4
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.9e-155 553.1 386 75.1
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 3.3e-155 552.4 450 66.4
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 3.3e-155 552.4 450 66.4
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 3.3e-155 552.4 450 66.4
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 2.1e-154 549.7 447 66.2
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.6e-154 548.9 446 67.9
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 8.0e-154 547.7 380 73.2
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.4e-153 547.0 447 66.0
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.1e-153 545.8 456 65.8
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.1e-153 545.8 456 65.8
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 8.9e-153 544.3 447 65.5
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 7.8e-149 531.2 362 76.0
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 2.3e-148 529.6 365 74.0
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 7.8e-141 504.6 308 83.4
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.1e-138 496.5 455 61.1
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.3e-137 493.0 455 62.0
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 1.1e-134 484.2 311 78.8
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 5.1e-132 475.3 457 60.6
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 6.8e-129 464.9 307 79.8
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 2.0e-128 463.4 290 82.8
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 7.1e-126 454.9 282 83.0
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.9e-118 430.3 371 60.9
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.0e-116 424.5 373 60.6
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.7e-116 423.7 295 74.2
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 5.1e-116 422.2 371 59.8
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 7.3e-115 418.3 376 58.8
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.6e-114 417.2 380 58.7
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.8e-113 413.7 374 58.0
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 5.3e-113 412.1 280 73.6
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.2e-103 380.2 323 63.5
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 1.1e-102 377.9 284 72.2
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 7.9e-101 371.7 369 55.6
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 6.7e-100 368.6 369 55.3
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.3e-95 354.4 337 55.8
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.1e-93 347.1 367 54.0
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.0e-92 344.7 384 51.0
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 7.4e-91 338.6 355 51.8
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.5e-83 314.3 375 47.7
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.3e-82 311.2 374 50.5
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 2.9e-79 300.1 243 65.4
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 7.2e-70 268.9 332 49.7
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 4.4e-51 206.5 150 70.7
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 6.3e-50 202.6 346 40.2
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.3e-42 176.0 164 54.9
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 6.3e-42 176.0 222 47.7
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.0e-39 166.4 136 65.4
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 9.2e-33 145.6 142 52.8
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.6e-32 143.3 92 75.0
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.3e-31 141.0 111 64.9
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.6e-31 139.0 171 48.5
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.4e-25 121.7 73 87.7
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.2e-20 103.2 87 67.8
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.1e-16 91.3 102 49.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 9.6e-14 82.4 75 53.3
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.8e-10 70.5 54 68.5
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 9.3e-09 65.9 178 33.7


User provided reference genes

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