Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 8.9e-66 253.4 127 100.0
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 1.5e-49 199.5 122 80.3
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 1.5e-49 199.5 121 80.2
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 3.4e-49 198.4 122 77.9
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 4.4e-49 198.0 122 78.7
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 1.3e-48 196.4 122 77.9
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 4.9e-48 194.5 122 76.2
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 4.9e-48 194.5 122 76.2
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.9e-48 194.5 122 76.2
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 4.9e-48 194.5 122 76.2
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 4.9e-48 194.5 122 76.2
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 8.4e-48 193.7 122 77.0
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 8.4e-48 193.7 122 77.0
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 8.4e-48 193.7 122 76.2
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 8.4e-48 193.7 122 76.2
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 1.1e-47 193.4 122 79.5
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.1e-47 193.4 122 77.0
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.1e-47 193.4 122 77.0
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.4e-47 193.0 122 75.4
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 1.9e-47 192.6 122 74.6
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.9e-47 192.6 122 76.2
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 1.9e-47 192.6 122 77.0
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.4e-47 192.2 122 76.2
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 3.2e-47 191.8 122 75.4
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 3.2e-47 191.8 122 77.0
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 4.2e-47 191.4 122 75.4
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 4.2e-47 191.4 124 76.6
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 9.3e-47 190.3 123 76.4
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 1.6e-46 189.5 124 75.8
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.6e-46 189.5 122 78.7
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 2.7e-46 188.7 122 75.4
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 2.7e-46 188.7 122 73.8
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 6.0e-46 187.6 123 75.6
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 1.0e-45 186.8 122 74.6
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 1.0e-45 186.8 122 74.6
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.3e-45 186.4 122 73.8
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 1.7e-45 186.0 123 74.0
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 2.3e-45 185.7 122 73.0
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 2.3e-45 185.7 133 69.2
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 3.9e-45 184.9 123 74.8
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 6.6e-45 184.1 122 72.1
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 6.6e-45 184.1 122 73.0
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 8.7e-45 183.7 123 74.0
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 8.7e-45 183.7 123 70.7
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 1.5e-44 183.0 122 71.3
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 1.5e-44 183.0 140 66.4
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.9e-44 182.6 122 73.0
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 1.9e-44 182.6 123 74.0
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 2.5e-44 182.2 122 70.5
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 2.5e-44 182.2 122 71.3
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 4.3e-44 181.4 123 69.1
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 5.6e-44 181.0 126 73.0
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 9.6e-44 180.3 123 72.4
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 9.6e-44 180.3 123 69.9
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 9.6e-44 180.3 123 69.9
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 9.6e-44 180.3 122 70.5
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 9.6e-44 180.3 122 70.5
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 1.6e-43 179.5 122 73.8
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 1.6e-43 179.5 123 69.1
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 4.8e-43 177.9 122 68.9
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 4.8e-43 177.9 124 70.2
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 6.2e-43 177.6 122 68.9
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 6.2e-43 177.6 122 69.7
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 1.1e-42 176.8 123 69.9
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.1e-42 176.8 122 72.1
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.4e-42 176.4 122 68.9
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 1.4e-42 176.4 122 68.0
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 1.8e-42 176.0 123 71.5
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 1.8e-42 176.0 124 69.4
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 2.4e-42 175.6 122 66.4
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 3.1e-42 175.3 122 72.1
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 3.1e-42 175.3 123 69.1
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 6.9e-42 174.1 114 72.8
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.2e-41 173.3 122 67.2
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.2e-41 173.3 122 67.2
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 1.5e-41 172.9 120 69.2
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 2.0e-41 172.6 137 65.0
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 2.6e-41 172.2 122 66.4
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 4.5e-41 171.4 113 69.9
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 5.8e-41 171.0 122 67.2
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 5.8e-41 171.0 124 63.7
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 9.9e-41 170.2 129 65.1
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 2.2e-40 169.1 122 64.8
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 2.2e-40 169.1 160 58.1
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 2.9e-40 168.7 122 65.6
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 4.9e-40 167.9 120 66.7
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 8.4e-40 167.2 102 77.5
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 1.1e-39 166.8 120 66.7
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.9e-39 166.0 122 65.6
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.4e-39 165.6 103 73.8
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 3.2e-39 165.2 102 76.5
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 5.4e-39 164.5 122 63.9
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 2.1e-38 162.5 119 64.7
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 4.6e-38 161.4 125 66.4
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 6.0e-38 161.0 121 66.1
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 6.0e-38 161.0 114 65.8
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 1.0e-37 160.2 122 69.7
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 3.0e-37 158.7 123 64.2
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.1e-36 156.8 114 64.9
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 1.5e-36 156.4 109 68.8
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.5e-36 156.4 152 56.6
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 1.3e-35 153.3 104 70.2
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.3e-35 153.3 127 60.6
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.6e-35 152.9 125 60.0
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 2.8e-35 152.1 120 61.7
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 3.7e-35 151.8 122 60.7
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 4.8e-35 151.4 120 61.7
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 1.1e-34 150.2 122 59.8
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 1.1e-34 150.2 119 62.2
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 1.4e-34 149.8 122 59.8
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 1.4e-34 149.8 122 59.8
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 1.4e-34 149.8 122 59.8
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 2.4e-34 149.1 110 62.7
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 2.4e-34 149.1 110 62.7
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 2.4e-34 149.1 124 57.3
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 2.4e-34 149.1 88 78.4
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 4.0e-34 148.3 122 64.8
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 5.3e-34 147.9 110 61.8
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 5.3e-34 147.9 163 49.7
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 6.9e-34 147.5 110 61.8
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 9.0e-34 147.1 113 65.5
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 1.5e-33 146.4 96 74.0
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 2.0e-33 146.0 107 63.6
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 2.0e-33 146.0 122 58.2
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.6e-33 145.6 117 59.8
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 5.8e-33 144.4 95 74.7
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.2e-32 142.5 107 58.9
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.2e-32 142.5 106 58.5
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 4.9e-32 141.4 85 77.6
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 6.4e-32 141.0 124 54.0
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 6.4e-32 141.0 87 72.4
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.1e-31 140.2 111 57.7
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.4e-31 139.0 118 55.1
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.6e-30 136.3 90 72.2
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.1e-30 136.0 107 56.1
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 3.9e-29 131.7 155 47.1
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 2.5e-28 129.0 100 58.0
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 4.0e-26 121.7 122 52.5
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 6.9e-26 120.9 98 58.2
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.5e-25 119.8 75 77.3
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 5.8e-25 117.9 126 50.0
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 1.0e-24 117.1 75 73.3
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 2.9e-24 115.5 104 55.8
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 1.1e-23 113.6 76 73.7
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 4.2e-23 111.7 63 79.4
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 1.2e-22 110.2 95 56.8
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 4.6e-22 108.2 114 45.6
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 4.3e-20 101.7 73 61.6
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 9.7e-20 100.5 74 63.5
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 3.7e-19 98.6 67 67.2
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 4.5e-17 91.7 56 76.8
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.8e-16 88.6 51 84.3
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 3.2e-15 85.5 101 36.6
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 2.7e-14 82.4 122 40.2
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 1.8e-13 79.7 86 44.2
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 5.7e-12 74.7 104 36.5
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.3e-10 68.2 50 64.0
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 5.3e-10 68.2 47 66.0
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 6.5e-08 61.2 90 28.9


User provided reference genes

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