Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 2.7e-89 332.0 174 100.0
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 3.0e-64 248.8 193 71.0
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.1e-63 246.9 189 71.4
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.1e-63 246.9 186 73.1
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.5e-63 246.5 187 72.7
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 1.9e-63 246.1 186 73.1
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.9e-63 246.1 188 71.8
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 3.7e-62 241.9 194 68.0
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 8.2e-62 240.7 196 69.4
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 8.2e-62 240.7 196 69.4
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 1.4e-61 240.0 192 70.3
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.4e-61 239.2 188 70.2
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 3.1e-61 238.8 188 66.5
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 9.1e-61 237.3 187 70.6
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 9.1e-61 237.3 187 69.5
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.2e-60 236.9 187 68.4
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 1.2e-60 236.9 191 67.5
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.5e-60 236.5 192 68.8
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 2.0e-60 236.1 181 71.3
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.0e-60 236.1 193 70.5
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 3.4e-60 235.3 185 70.3
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.5e-60 235.0 192 66.7
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 5.9e-60 234.6 189 69.8
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 7.7e-60 234.2 188 69.1
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 7.7e-60 234.2 188 70.7
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.0e-59 233.8 185 69.2
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.0e-59 233.8 185 69.2
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.7e-59 233.0 189 66.7
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.7e-59 233.0 185 69.2
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.7e-59 233.0 188 69.7
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.7e-59 233.0 187 69.5
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.9e-59 232.3 194 67.0
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.8e-59 231.9 188 69.1
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 6.5e-59 231.1 188 68.6
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 8.5e-59 230.7 185 68.6
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 1.1e-58 230.3 184 68.5
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.1e-58 230.3 192 67.2
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.4e-58 229.9 190 65.8
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.4e-58 229.9 186 68.8
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 2.5e-58 229.2 188 68.1
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.5e-58 229.2 192 67.2
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 5.5e-58 228.0 183 68.9
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 5.5e-58 228.0 188 68.6
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 5.5e-58 228.0 188 67.6
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 7.2e-58 227.6 190 66.8
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.2e-57 226.9 126 92.1
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.2e-57 226.9 192 67.7
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 2.7e-57 225.7 194 64.9
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 2.7e-57 225.7 197 65.5
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 3.6e-57 225.3 182 68.1
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 4.7e-57 224.9 189 67.2
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 4.7e-57 224.9 192 65.1
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 6.1e-57 224.6 192 65.1
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 7.9e-57 224.2 188 68.1
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.9e-57 224.2 193 65.8
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.9e-57 224.2 193 65.8
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 7.9e-57 224.2 192 64.6
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.0e-56 223.8 186 65.6
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 1.4e-56 223.4 181 69.6
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.8e-56 223.0 188 66.5
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 2.3e-56 222.6 189 66.7
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 3.0e-56 222.2 194 65.5
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 3.0e-56 222.2 194 64.9
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 3.0e-56 222.2 154 76.0
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.0e-56 222.2 190 65.8
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 3.9e-56 221.9 179 68.2
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 5.1e-56 221.5 203 61.6
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 8.8e-56 220.7 138 82.6
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 8.8e-56 220.7 192 63.0
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 8.8e-56 220.7 125 87.2
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 8.8e-56 220.7 124 90.3
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.1e-55 220.3 125 88.0
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 1.5e-55 219.9 171 68.4
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 2.0e-55 219.5 124 89.5
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 2.0e-55 219.5 124 89.5
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 2.0e-55 219.5 126 86.5
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.0e-55 219.5 125 88.0
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 2.0e-55 219.5 175 68.6
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 2.0e-55 219.5 124 87.1
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 2.6e-55 219.2 190 64.7
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 2.6e-55 219.2 188 64.4
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 2.6e-55 219.2 193 63.2
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 3.3e-55 218.8 145 77.2
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 3.3e-55 218.8 124 88.7
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 4.4e-55 218.4 178 66.3
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 4.4e-55 218.4 180 67.8
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 5.7e-55 218.0 190 64.2
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 5.7e-55 218.0 186 65.6
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 9.7e-55 217.2 126 86.5
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 9.7e-55 217.2 176 69.3
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 9.7e-55 217.2 185 65.4
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.3e-54 216.9 124 87.1
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.3e-54 216.9 124 87.1
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.3e-54 216.9 171 67.8
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 2.2e-54 216.1 126 85.7
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 2.2e-54 216.1 188 64.9
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 2.8e-54 215.7 190 63.7
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 2.8e-54 215.7 124 87.1
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 2.8e-54 215.7 140 79.3
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 3.7e-54 215.3 190 63.7
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 3.7e-54 215.3 124 86.3
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 3.7e-54 215.3 124 86.3
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 3.7e-54 215.3 124 86.3
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 3.7e-54 215.3 177 67.8
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 6.3e-54 214.5 140 78.6
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 6.3e-54 214.5 140 78.6
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 6.3e-54 214.5 173 67.6
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.4e-53 212.6 124 83.9
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 2.4e-53 212.6 126 83.3
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 2.4e-53 212.6 124 86.3
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 4.1e-53 211.8 189 61.9
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 6.9e-53 211.1 124 84.7
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 6.9e-53 211.1 124 85.5
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.5e-52 209.9 169 68.0
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 2.0e-52 209.5 220 56.8
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 2.0e-52 209.5 181 61.9
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.0e-51 207.2 189 61.4
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.7e-51 206.5 188 61.2
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 1.7e-51 206.5 231 56.7
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.4e-50 203.4 158 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.9e-50 203.0 125 82.4
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 5.5e-50 201.4 140 74.3
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 9.4e-50 200.7 125 78.4
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.2e-49 200.3 146 76.0
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 4.7e-49 198.4 186 61.3
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 5.2e-48 194.9 126 77.0
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 6.7e-48 194.5 124 77.4
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-47 193.7 124 75.8
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-47 193.7 124 77.4
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.1e-47 193.7 124 77.4
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.1e-47 193.7 175 61.7
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.5e-47 193.4 124 77.4
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 4.4e-47 191.8 124 75.8
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 5.7e-47 191.4 177 60.5
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 4.1e-45 185.3 156 62.8
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 9.1e-45 184.1 187 56.1
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 3.2e-42 175.6 160 64.4
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.6e-41 173.3 186 55.9
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.6e-41 173.3 166 61.4
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 4.0e-40 168.7 125 67.2
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 5.2e-40 168.3 124 68.5
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 5.7e-39 164.9 153 61.4
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.3e-38 163.7 153 60.8
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 2.8e-38 162.5 126 64.3
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.1e-37 159.1 186 51.1
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 2.7e-36 156.0 184 51.1
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 5.9e-36 154.8 124 63.7
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.3e-35 153.7 122 63.1
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 2.2e-35 152.9 127 59.8
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 5.0e-35 151.8 137 59.1
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 5.5e-34 148.3 122 63.1
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 8.0e-33 144.4 92 73.9
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.0e-32 142.1 110 62.7
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 2.0e-31 139.8 141 56.7
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 5.7e-31 138.3 81 85.2
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 2.8e-30 136.0 77 87.0
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.1e-29 132.1 93 65.6
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.5e-26 123.6 78 76.9
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 3.6e-25 119.0 123 56.9
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.1e-25 118.2 68 85.3
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.4e-24 117.1 141 50.4
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 4.4e-23 112.1 69 81.2
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.7e-22 110.2 69 79.7
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.3e-19 100.5 116 52.6
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 1.5e-18 97.1 69 69.6
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.5e-18 97.1 57 80.7
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.5e-18 96.3 54 83.3
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 5.6e-18 95.1 53 86.8
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.2e-17 94.0 53 84.9
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 6.1e-17 91.7 124 42.7
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 2.6e-15 86.3 49 83.7
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 5.8e-15 85.1 53 73.6
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 9.8e-15 84.3 53 73.6
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 8.9e-08 61.2 39 76.9
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 1.2e-07 60.8 37 73.0
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 2.0e-07 60.1 37 70.3
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 3.4e-07 59.3 37 70.3
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 2.2e-06 56.6 37 67.6
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 8.3e-06 54.7 30 83.3


User provided reference genes

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