Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 8.4e-196 686.8 337 100.0
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 1.2e-141 506.9 309 80.9
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 2.5e-139 499.2 312 77.9
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 7.2e-139 497.7 309 79.3
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 7.2e-139 497.7 317 76.3
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 2.7e-138 495.7 315 76.5
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 3.6e-138 495.4 313 78.3
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 1.4e-137 493.4 332 74.1
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 3.0e-137 492.3 318 78.6
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 5.2e-137 491.5 328 75.6
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 6.7e-137 491.1 316 78.2
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 2.0e-136 489.6 316 77.8
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 2.6e-136 489.2 316 77.8
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 3.3e-136 488.8 333 73.0
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 5.7e-136 488.0 312 77.6
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 7.4e-136 487.6 340 72.6
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 1.3e-135 486.9 311 75.6
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 1.1e-134 483.8 333 72.1
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 1.4e-134 483.4 315 73.0
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 1.8e-134 483.0 335 72.2
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 3.1e-134 482.3 334 70.4
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 4.1e-134 481.9 315 72.7
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 1.6e-133 479.9 334 72.2
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 2.0e-133 479.6 315 74.0
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 2.6e-133 479.2 311 75.9
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 3.5e-133 478.8 327 74.0
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 1.7e-132 476.5 303 78.5
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 1.7e-132 476.5 314 75.2
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 2.2e-132 476.1 304 77.3
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 2.2e-132 476.1 315 74.9
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 2.2e-132 476.1 300 78.0
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 5.0e-132 474.9 303 76.6
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 1.9e-131 473.0 317 73.8
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 2.5e-131 472.6 300 77.0
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 3.2e-131 472.2 331 71.6
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 4.2e-131 471.9 300 77.3
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 2.1e-130 469.5 334 71.9
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 2.1e-130 469.5 303 76.6
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 2.7e-130 469.2 291 79.0
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 2.7e-130 469.2 323 72.8
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 6.1e-130 468.0 331 70.4
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 5.2e-129 464.9 303 75.6
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 6.8e-129 464.5 321 72.3
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 6.8e-129 464.5 313 72.5
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 7.5e-128 461.1 303 72.9
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 1.3e-127 460.3 334 68.9
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 1.7e-127 459.9 342 69.6
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 2.2e-127 459.5 333 71.2
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 2.8e-127 459.1 338 68.9
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 3.7e-127 458.8 312 72.4
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 6.3e-127 458.0 334 70.4
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 1.1e-126 457.2 324 70.4
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 1.8e-126 456.4 331 69.5
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 3.1e-126 455.7 314 72.6
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 1.6e-125 453.4 294 74.5
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 2.0e-125 453.0 273 78.8
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 5.9e-125 451.4 335 69.0
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 1.0e-124 450.7 260 80.4
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 1.3e-124 450.3 330 68.8
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 1.7e-124 449.9 332 69.0
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 2.9e-124 449.1 313 72.2
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 1.9e-123 446.4 324 69.4
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 3.2e-123 445.7 339 66.4
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 5.5e-123 444.9 333 68.8
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 2.1e-122 443.0 290 77.2
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 6.1e-122 441.4 290 76.9
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 8.0e-122 441.0 312 70.2
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 1.0e-121 440.7 329 69.0
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 1.0e-121 440.7 284 77.1
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 1.4e-121 440.3 300 73.3
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 1.4e-121 440.3 300 73.3
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 1.4e-121 440.3 315 71.1
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 3.0e-121 439.1 291 74.6
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 1.5e-120 436.8 300 73.0
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 1.5e-120 436.8 300 73.0
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 2.0e-120 436.4 300 73.0
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 2.6e-120 436.0 301 72.8
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 3.4e-120 435.6 293 74.4
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 5.7e-120 434.9 302 71.5
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.8e-119 432.6 288 74.0
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 3.7e-119 432.2 307 71.7
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 8.3e-119 431.0 320 68.8
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 2.4e-118 429.5 306 71.2
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 7.0e-118 427.9 305 69.8
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 1.2e-117 427.2 302 70.9
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 1.6e-117 426.8 294 72.8
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.7e-117 424.5 270 76.3
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 5.0e-116 421.8 231 87.0
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 4.2e-115 418.7 291 71.8
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 4.2e-115 418.7 246 80.9
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 5.6e-115 418.3 243 82.7
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 3.4e-112 409.1 324 65.1
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 1.8e-110 403.3 328 62.8
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 1.8e-110 403.3 217 87.1
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.6e-109 398.7 256 75.0
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 3.1e-105 386.0 308 64.0
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 3.7e-103 379.0 266 71.8
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 1.9e-102 376.7 307 64.8
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 5.2e-97 358.6 304 63.5
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 1.7e-92 343.6 328 54.6
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 5.6e-91 338.6 233 67.8
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 1.1e-89 334.3 183 88.0
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 1.1e-89 334.3 183 88.0
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 2.4e-78 296.6 317 49.2
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 1.2e-77 294.3 197 73.1
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 2.5e-75 286.6 206 69.4
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 6.4e-71 271.9 218 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 1.6e-66 257.3 189 63.0
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 5.8e-64 248.8 150 80.7
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 5.6e-59 232.3 201 58.7
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 2.8e-42 176.8 167 52.1
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 8.2e-34 148.7 78 87.2
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 1.5e-27 127.9 134 50.0
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 2.7e-21 107.1 96 60.4
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 6.1e-21 105.9 66 77.3
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 8.3e-10 68.9 52 65.4
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 1.2e-08 65.1 174 32.2
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 1.3e-07 61.6 168 30.4
Sp6g19740 Schrenkiella parvula HOM05D003204 ORTHO05D003566 2.9e-07 60.5 167 30.5
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 8.5e-07 58.9 170 28.2
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 1.1e-06 58.5 167 29.3
CAN.G520.7 Capsicum annuum HOM05D003204 ORTHO05D003566 1.1e-06 58.5 168 31.5
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 1.9e-06 57.8 168 30.4
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 1.9e-06 57.8 172 30.2
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 1.9e-06 57.8 172 30.2
arahy.Tifrunner.gnm1.ann1.I77GVJ Arachis hypogaea HOM05D003204 ORTHO05D003566 2.5e-06 57.4 167 28.7
C02p13650 Brassica napus HOM05D003204 ORTHO05D003566 2.5e-06 57.4 173 30.1
Sopen07g001560 Solanum pennellii HOM05D003204 ORTHO05D003566 2.5e-06 57.4 169 32.0
BcaB01g04554 Brassica carinata HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.8
BcaC03g14125 Brassica carinata HOM05D003204 ORTHO05D003566 3.2e-06 57.0 167 29.9
BcaC04g19909 Brassica carinata HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.2
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.8
C09p49990 Brassica napus HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.2
BolC2t07477H Brassica oleracea HOM05D003204 ORTHO05D003566 3.2e-06 57.0 167 29.9
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.8
BolC9t57852H Brassica oleracea HOM05D003204 ORTHO05D003566 3.2e-06 57.0 170 28.2
Eucgr.C04044 Eucalyptus grandis HOM05D003204 ORTHO05D003566 3.2e-06 57.0 169 32.0
Eucgr.L00627 Eucalyptus grandis HOM05D003204 ORTHO05D003566 3.2e-06 57.0 169 32.0
CAN.G551.27 Capsicum annuum HOM05D003204 ORTHO05D003566 4.2e-06 56.6 169 30.8
Ca_21107_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 4.2e-06 56.6 170 25.9
VMungo1309G2170 Vigna mungo HOM05D003204 ORTHO05D003566 4.2e-06 56.6 167 28.7
Ah.09g226600 Amaranthus hybridus HOM05D003204 ORTHO05D003566 5.5e-06 56.2 168 29.8
A10p16100 Brassica napus HOM05D003204 ORTHO05D003566 5.5e-06 56.2 170 28.2
Duzib168G0965 Durio zibethinus HOM05D003204 ORTHO05D003566 7.2e-06 55.8 169 30.8
Migut.K00344 Erythranthe guttata HOM05D003204 ORTHO05D003566 7.2e-06 55.8 169 32.0
Manes.14G141400 Manihot esculenta HOM05D003204 ORTHO05D003566 7.2e-06 55.8 168 30.4
A02p07990 Brassica napus HOM05D003204 ORTHO05D003566 9.5e-06 55.5 167 29.3
A03p12410 Brassica napus HOM05D003204 ORTHO05D003566 9.5e-06 55.5 170 28.2
BraA02t05872Z Brassica rapa HOM05D003204 ORTHO05D003566 9.5e-06 55.5 167 29.3
BraA03t10555Z Brassica rapa HOM05D003204 ORTHO05D003566 9.5e-06 55.5 170 28.2
Thhalv10014775m.g Eutrema salsugineum HOM05D003204 ORTHO05D003566 9.5e-06 55.5 167 29.9
Medtr4g131400 Medicago truncatula HOM05D003204 ORTHO05D003566 9.5e-06 55.5 169 32.0
PGSC0003DMG400003187 Solanum tuberosum HOM05D003204 ORTHO05D003566 9.5e-06 55.5 169 32.0


User provided reference genes

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