Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu005060.1 Olea europaea HOM05D003169 ORTHO05D003700 0.0e+00 1667.9 826 100.0
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 0.0e+00 1312.0 870 77.1
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 0.0e+00 1301.2 865 76.6
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 0.0e+00 1297.7 954 70.6
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 0.0e+00 1293.9 865 76.1
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 0.0e+00 1292.3 862 75.6
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 0.0e+00 1291.6 874 74.9
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 0.0e+00 1291.6 880 74.9
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 0.0e+00 1289.6 909 73.3
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 0.0e+00 1289.2 826 78.3
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 0.0e+00 1287.7 873 74.8
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 0.0e+00 1284.6 887 72.9
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 0.0e+00 1284.6 835 78.6
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 0.0e+00 1283.9 865 75.6
Ciclev10004277m.g Citrus clementina HOM05D003169 ORTHO05D003700 0.0e+00 1281.2 890 73.9
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 0.0e+00 1279.6 873 74.8
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 0.0e+00 1276.5 882 73.9
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 0.0e+00 1275.0 839 77.1
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 0.0e+00 1271.9 842 75.5
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 0.0e+00 1270.0 849 76.0
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 0.0e+00 1270.0 839 76.8
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 0.0e+00 1269.2 838 77.0
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 0.0e+00 1268.8 839 76.6
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1268.1 854 75.3
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 0.0e+00 1266.9 842 75.3
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 0.0e+00 1265.4 874 73.9
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 0.0e+00 1264.2 849 75.7
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 0.0e+00 1264.2 873 73.1
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 0.0e+00 1263.1 861 74.8
Oeu029454.1 Olea europaea HOM05D003169 ORTHO05D003700 0.0e+00 1262.3 825 78.2
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 0.0e+00 1261.9 863 73.8
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 0.0e+00 1261.9 883 72.5
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 0.0e+00 1261.9 889 72.8
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 0.0e+00 1261.5 895 71.6
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 0.0e+00 1260.7 895 71.6
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 0.0e+00 1260.7 846 75.8
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1258.4 851 74.7
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 0.0e+00 1257.7 882 72.8
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 0.0e+00 1257.3 879 73.6
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 0.0e+00 1257.3 912 71.3
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 0.0e+00 1255.7 833 77.1
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 0.0e+00 1255.4 879 72.9
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 0.0e+00 1255.0 849 74.9
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 0.0e+00 1255.0 885 72.2
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1254.2 853 74.3
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 0.0e+00 1250.7 848 74.9
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 0.0e+00 1250.7 849 74.4
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 0.0e+00 1250.7 873 72.5
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 0.0e+00 1250.3 883 72.3
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 0.0e+00 1249.6 875 73.0
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 0.0e+00 1244.6 855 75.0
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 0.0e+00 1242.6 858 74.0
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 0.0e+00 1241.5 856 73.2
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 0.0e+00 1236.9 874 73.1
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1234.6 856 72.7
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 0.0e+00 1231.1 853 73.2
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 0.0e+00 1229.2 849 73.0
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 0.0e+00 1225.3 850 73.5
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 0.0e+00 1223.8 951 67.1
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 0.0e+00 1219.9 889 70.0
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 0.0e+00 1219.1 844 72.7
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 0.0e+00 1218.4 854 72.2
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 0.0e+00 1208.7 899 70.3
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 0.0e+00 1205.7 853 72.3
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 0.0e+00 1199.1 868 69.8
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 0.0e+00 1198.0 871 69.8
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 0.0e+00 1195.6 830 71.7
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 0.0e+00 1194.5 867 69.4
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 0.0e+00 1192.9 868 69.2
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 0.0e+00 1192.6 883 69.5
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 0.0e+00 1192.6 865 69.1
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 0.0e+00 1192.2 828 71.5
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 0.0e+00 1189.5 870 69.3
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 0.0e+00 1189.1 731 80.6
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 0.0e+00 1186.4 863 69.1
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 0.0e+00 1186.4 868 69.2
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 0.0e+00 1182.5 863 68.9
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 0.0e+00 1176.0 862 71.2
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 0.0e+00 1175.6 864 70.7
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 0.0e+00 1175.6 895 66.7
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 0.0e+00 1171.0 893 66.6
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 0.0e+00 1169.8 844 70.6
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 0.0e+00 1166.4 827 71.3
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 0.0e+00 1125.2 852 67.3
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 0.0e+00 1112.4 895 65.4
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 0.0e+00 1106.3 839 68.4
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 0.0e+00 1095.1 721 77.3
Ca_03187_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 0.0e+00 1090.5 779 71.0
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 0.0e+00 1089.7 739 73.6
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 0.0e+00 1086.6 744 73.5
Solyc10g005490.4 Solanum lycopersicum HOM05D003169 ORTHO05D003700 0.0e+00 1082.8 766 72.2
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 0.0e+00 1081.6 905 61.7
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 0.0e+00 1077.0 896 61.7
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 0.0e+00 1075.8 790 69.1
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 2.8e-311 1071.6 625 87.2
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 2.8e-311 1071.6 799 70.2
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 1.1e-310 1069.7 741 72.1
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 1.4e-308 1062.8 730 72.9
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 3.5e-304 1048.1 1087 56.2
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 6.6e-303 1043.9 835 65.0
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 1.4e-297 1026.2 861 61.6
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 2.4e-297 1025.4 845 61.5
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 7.1e-297 1023.8 837 64.6
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 3.5e-296 1021.5 880 61.5
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 4.6e-296 1021.1 855 62.3
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 3.3e-294 1015.0 732 70.2
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 5.6e-294 1014.2 733 70.4
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 5.8e-291 1004.2 614 81.4
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 5.1e-287 991.1 687 74.5
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 8.1e-285 983.8 864 60.4
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 5.3e-284 981.1 809 63.9
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 2.1e-280 969.1 842 61.0
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 1.4e-273 946.4 730 62.7
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 5.7e-262 907.9 723 65.1
VMungo1127G0472 Vigna mungo HOM05D003169 ORTHO05D003700 5.3e-244 848.2 495 84.0
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 1.5e-243 846.7 758 59.8
Ca_30144_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 4.1e-236 822.0 634 67.5
Cc00_g09110 Coffea canephora HOM05D003169 ORTHO05D003700 3.0e-223 779.2 560 71.1
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 3.1e-212 742.7 466 80.0
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 3.0e-194 682.9 463 76.5
MBI18_g40795_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 2.4e-172 610.1 580 59.5
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 3.6e-168 596.3 439 69.2
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 1.3e-165 587.8 443 70.9
Oeu005061.1 Olea europaea HOM05D003169 ORTHO05D003700 3.9e-162 576.2 388 77.1
Lj2A8G63 Lonicera japonica HOM05D003169 ORTHO05D003700 5.5e-156 555.8 467 64.0
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 7.9e-155 552.0 463 64.4
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 4.8e-152 542.7 861 38.7
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 5.9e-142 509.2 303 85.8
COL.COLO4_25000 Corchorus olitorius HOM05D003169 ORTHO05D003700 1.6e-139 501.1 350 72.9
MBI18_g42879_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 8.2e-136 488.8 381 65.9
Medtr6g091930 Medicago truncatula HOM05D003169 ORTHO05D003700 1.2e-134 485.0 287 79.1
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 1.0e-130 471.9 747 41.0
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 1.7e-125 454.5 706 40.4
HanXRQChr13g0408921 Helianthus annuus HOM05D003169 ORTHO05D003700 9.4e-124 448.7 348 64.1
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 3.1e-119 433.7 761 37.2
Oeu025996.1 Olea europaea HOM05D003169 ORTHO05D003700 9.1e-119 432.2 303 72.6
Cpa.g.sc32.149 Carica papaya HOM05D003169 ORTHO05D003700 1.2e-110 405.2 323 65.6
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 2.3e-106 391.0 231 82.3
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 7.2e-100 369.4 759 33.9
PRCOL_00005992 Prasinoderma coloniale HOM05D003169 ORTHO05D003700 6.8e-98 362.8 970 31.0
Os08g0223766 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 9.5e-92 342.4 292 61.0
TPR.G3623 Trifolium pratense HOM05D003169 ORTHO05D003700 2.1e-83 314.7 310 55.8
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 6.2e-83 313.2 538 38.3
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 8.0e-83 312.8 518 38.6
CiPaw.15G112000 Carya illinoinensis HOM05D003169 ORTHO05D003700 2.6e-81 307.8 275 59.6
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 1.1e-76 292.4 449 41.6
SEGI_39235 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.5e-76 292.0 163 85.3
SEGI_24184 Sequoiadendron giganteum HOM05D003169 ORTHO05D000014 3.3e-76 290.8 286 55.2
Nitab4.5_0007774g0010 Nicotiana tabacum HOM05D003169 ORTHO05D003700 8.1e-67 259.6 276 54.3
Nitab4.5_0003291g0050 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.4e-66 258.1 274 54.4
Nn7g38412 Nelumbo nucifera HOM05D003169 ORTHO05D003700 5.2e-66 256.9 170 78.2
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 2.9e-64 251.1 145 85.5
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 1.4e-63 248.8 226 60.2
Os08g0223700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 5.6e-60 236.9 326 42.9
SMO358G0497 Selaginella moellendorffii HOM05D003169 ORTHO05D003700 1.6e-59 235.3 134 85.1
Cpa.g.sc32.155 Carica papaya HOM05D003169 ORTHO05D003700 1.4e-58 232.3 123 88.6
QL04p010784 Quercus lobata HOM05D003169 ORTHO05D003700 4.2e-55 220.7 115 96.5
MD07G1097900 Malus domestica HOM05D003169 ORTHO05D003700 2.1e-54 218.4 193 60.1
Thhalv10000653m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 7.3e-52 209.9 160 68.1
TPR.G3613 Trifolium pratense HOM05D003169 ORTHO05D003700 2.8e-51 208.0 218 53.7
SEGI_10615 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 7.9e-46 189.9 116 83.6
Cpa.g.sc32.147 Carica papaya HOM05D003169 ORTHO05D003700 2.1e-43 181.8 115 80.9
Hund20128 Selenicereus undatus HOM05D003169 ORTHO05D003700 9.3e-39 166.4 99 83.8
SGA_v2.0_scaffold4G01863 Striga asiatica HOM05D003169 ORTHO05D003700 2.3e-37 161.8 117 70.1
COL.COLO4_25001 Corchorus olitorius HOM05D003169 ORTHO05D003700 8.2e-35 153.3 77 98.7
Thhalv10000387m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 6.9e-34 150.2 87 78.2
TPR.G373 Trifolium pratense HOM05D003169 ORTHO05D003700 1.8e-26 125.6 122 56.6
Actinidia33340 Actinidia chinensis HOM05D003169 ORTHO05D003700 2.4e-26 125.2 63 98.4
arahy.Tifrunner.gnm1.ann1.2P0S20 Arachis hypogaea HOM05D003169 ORTHO05D003700 3.1e-26 124.8 85 71.8
TPR.G36388 Trifolium pratense HOM05D003169 ORTHO05D036887 3.1e-26 124.8 140 48.6
Nitab4.5_0020695g0020 Nicotiana tabacum HOM05D003169 ORTHO05D036887 6.1e-22 110.5 120 50.0
RhsimUnG0048600 Rhododendron simsii HOM05D003169 ORTHO05D003700 2.3e-21 108.6 195 40.5
MELO3C035414.2 Cucumis melo HOM05D003169 ORTHO05D003700 7.4e-20 103.6 76 56.6
Actinidia33341 Actinidia chinensis HOM05D003169 ORTHO05D003700 3.1e-18 98.2 136 47.8
Actinidia33342 Actinidia chinensis HOM05D003169 ORTHO05D003700 5.3e-18 97.4 49 93.9
SGA_v2.0_scaffold4G01862 Striga asiatica HOM05D003543 ORTHO05D004112 1.0e-13 83.2 48 85.4
Nitab4.5_0007774g0090 Nicotiana tabacum HOM05D003169 ORTHO05D036887 8.2e-11 73.6 109 44.0
Cpa.g.sc32.156 Carica papaya HOM05D003169 ORTHO05D003700 5.3e-10 70.9 117 36.8
PGSC0003DMG400011248 Solanum tuberosum HOM05D003169 ORTHO05D003700 4.5e-09 67.8 114 38.6
Potri.002G262101 Populus trichocarpa HOM05D003169 ORTHO05D003700 1.0e-08 66.6 33 87.9
Cre02.g095052 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 2.2e-08 65.5 63 52.4
TAR636G1413 Trochodendron aralioides HOM05D002515 ORTHO05D002722 1.6e-06 59.3 29 82.8


User provided reference genes

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