Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu004704.1 Olea europaea HOM05D002095 ORTHO05D002058 9.5e-77 290.0 141 100.0
Oeu009397.1 Olea europaea HOM05D002095 ORTHO05D002058 7.4e-53 210.7 140 77.9
MSTRG.7165 Avicennia marina HOM05D002095 ORTHO05D002058 6.9e-35 151.0 138 58.0
SGA_v2.0_scaffold7G03762 Striga asiatica HOM05D002095 ORTHO05D002058 7.6e-34 147.5 140 58.6
CSS0017522 Camellia sinensis var. sinensis HOM05D002095 ORTHO05D002058 2.0e-26 122.9 136 52.2
Actinidia26859 Actinidia chinensis HOM05D002095 ORTHO05D002058 1.0e-25 120.6 136 48.5
CSS0046522 Camellia sinensis var. sinensis HOM05D002095 ORTHO05D002058 2.9e-25 119.0 136 50.7
unitig_32.g11053 Utricularia gibba HOM05D002095 ORTHO05D002058 2.9e-25 119.0 137 48.9
CAN.G449.14 Capsicum annuum HOM05D002095 ORTHO05D002058 1.4e-24 116.7 136 49.3
Rhsim13G0145500 Rhododendron simsii HOM05D002095 ORTHO05D002058 2.5e-24 115.9 137 46.7
RhsimUnG0110400 Rhododendron simsii HOM05D002095 ORTHO05D002058 2.5e-24 115.9 137 46.7
SalBow8G5099 Salvia bowleyana HOM05D002095 ORTHO05D002058 2.5e-24 115.9 102 57.8
PGSC0003DMG400008462 Solanum tuberosum HOM05D002095 ORTHO05D002058 2.5e-24 115.9 136 47.1
Dinv13971 Davidia involucrata HOM05D002095 ORTHO05D002058 1.6e-23 113.2 130 50.0
Dinv07410 Davidia involucrata HOM05D002095 ORTHO05D002058 4.6e-23 111.7 136 48.5
Solyc05g054080.3 Solanum lycopersicum HOM05D002095 ORTHO05D002058 4.6e-23 111.7 136 45.6
Sopen05g032570 Solanum pennellii HOM05D002095 ORTHO05D002058 4.6e-23 111.7 136 45.6
Lj1A1240G33 Lonicera japonica HOM05D002095 ORTHO05D002058 1.8e-22 109.8 139 48.9
QL05p069565 Quercus lobata HOM05D002095 ORTHO05D002058 1.8e-22 109.8 136 45.6
Manes.09G077200 Manihot esculenta HOM05D002095 ORTHO05D002058 3.9e-22 108.6 136 44.9
vmacro03639 Vaccinium macrocarpon HOM05D002095 ORTHO05D002058 6.7e-22 107.8 123 48.0
vmacro23370 Vaccinium macrocarpon HOM05D002095 ORTHO05D002058 6.7e-22 107.8 123 48.0
Manes.08G068300 Manihot esculenta HOM05D002095 ORTHO05D002058 1.1e-21 107.1 136 46.3
Hma1.2p1_0657F.1_g197090 Hydrangea macrophylla HOM05D002095 ORTHO05D002058 7.4e-21 104.4 137 46.7
GSVIVG01003328001 Vitis vinifera HOM05D002095 ORTHO05D002058 7.4e-21 104.4 134 43.3
Cc09_g00830 Coffea canephora HOM05D002095 ORTHO05D002058 9.7e-21 104.0 138 43.5
Cfa000093 Carpinus fangiana HOM05D002095 ORTHO05D002058 2.2e-20 102.8 136 43.4
CiPaw.09G103000 Carya illinoinensis HOM05D002095 ORTHO05D002058 2.8e-20 102.4 136 46.3
QL05p069531 Quercus lobata HOM05D002095 ORTHO05D002058 3.7e-20 102.1 136 43.4
Eucgr.D01414 Eucalyptus grandis HOM05D002095 ORTHO05D002058 4.8e-20 101.7 136 44.1
Haze_06939 Corylus avellana HOM05D002095 ORTHO05D002058 8.2e-20 100.9 112 49.1
Eucgr.L02994 Eucalyptus grandis HOM05D002095 ORTHO05D002058 1.4e-19 100.1 136 43.4
CiPaw.12G015000 Carya illinoinensis HOM05D002095 ORTHO05D002058 2.4e-19 99.4 136 45.6
Duzib160G0921 Durio zibethinus HOM05D002095 ORTHO05D002058 3.1e-19 99.0 136 42.6
Duzib235G1530 Durio zibethinus HOM05D002095 ORTHO05D002058 3.1e-19 99.0 136 42.6
CAN.G208.17 Capsicum annuum HOM05D002095 ORTHO05D002058 5.3e-19 98.2 136 43.4
CAN.G2440.1 Capsicum annuum HOM05D002095 ORTHO05D002058 5.3e-19 98.2 136 43.4
Cpa.g.sc3792.1 Carica papaya HOM05D002095 ORTHO05D002058 6.9e-19 97.8 136 42.6
Eucgr.D01415 Eucalyptus grandis HOM05D002095 ORTHO05D002058 6.9e-19 97.8 136 43.4
Glyma.07G265600 Glycine max HOM05D002095 ORTHO05D002058 6.9e-19 97.8 136 39.7
Glyma.07G265700 Glycine max HOM05D002095 ORTHO05D002058 6.9e-19 97.8 136 39.7
Lsat_1_v5_gn_4_61921 Lactuca sativa HOM05D002095 ORTHO05D002058 9.1e-19 97.4 138 42.0
Oeu007170.1 Olea europaea HOM05D002095 ORTHO05D002058 9.1e-19 97.4 141 40.4
PGR004G2232 Punica granatum HOM05D002095 ORTHO05D002058 9.1e-19 97.4 137 42.3
Duzib192G0198 Durio zibethinus HOM05D002095 ORTHO05D002058 2.0e-18 96.3 136 41.2
Thecc.06G234100 Theobroma cacao HOM05D002095 ORTHO05D002058 2.0e-18 96.3 136 40.4
Potri.006G011701 Populus trichocarpa HOM05D002095 ORTHO05D002058 3.4e-18 95.5 112 45.5
Glyma.17G008400 Glycine max HOM05D002095 ORTHO05D002058 4.5e-18 95.1 136 39.7
Potri.016G059800 Populus trichocarpa HOM05D002095 ORTHO05D002058 4.5e-18 95.1 112 45.5
Sabra06G0009300 Salix brachista HOM05D002095 ORTHO05D002058 4.5e-18 95.1 136 41.9
Migut.M01403 Erythranthe guttata HOM05D002095 ORTHO05D002058 7.7e-18 94.4 145 43.4
Eucgr.D01416 Eucalyptus grandis HOM05D002095 ORTHO05D002058 1.3e-17 93.6 136 40.4
Phvul.003G084200 Phaseolus vulgaris HOM05D002095 ORTHO05D002058 2.2e-17 92.8 136 40.4
Gohir.A06G153300 Gossypium hirsutum HOM05D002095 ORTHO05D002058 5.0e-17 91.7 136 39.0
arahy.Tifrunner.gnm1.ann1.WNC7YQ Arachis hypogaea HOM05D002095 ORTHO05D002058 6.5e-17 91.3 138 38.4
arahy.Tifrunner.gnm1.ann1.YREA25 Arachis hypogaea HOM05D002095 ORTHO05D002058 6.5e-17 91.3 138 38.4
DCAR_004908 Daucus carota HOM05D002095 ORTHO05D002058 8.5e-17 90.9 108 50.9
Gohir.D06G160100 Gossypium hirsutum HOM05D002095 ORTHO05D002058 8.5e-17 90.9 136 37.5
Ciclev10014213m.g Citrus clementina HOM05D002095 ORTHO05D002058 1.1e-16 90.5 138 41.3
Gorai.010G186800 Gossypium raimondii HOM05D002095 ORTHO05D002058 1.1e-16 90.5 136 37.5
HanXRQChr16g0516591 Helianthus annuus HOM05D002095 ORTHO05D002058 1.1e-16 90.5 138 40.6
Potri.016G012900 Populus trichocarpa HOM05D002095 ORTHO05D002058 1.1e-16 90.5 111 44.1
CiPaw.10G078500 Carya illinoinensis HOM05D002095 ORTHO05D002058 3.2e-16 89.0 139 41.7
MD05G1358400 Malus domestica HOM05D002095 ORTHO05D002058 3.2e-16 89.0 138 34.8
CANSAT56G0973 Cannabis sativa HOM05D002095 ORTHO05D002058 7.2e-16 87.8 136 39.7
MD10G1332500 Malus domestica HOM05D002095 ORTHO05D002058 7.2e-16 87.8 138 34.1
Nitab4.5_0000699g0090 Nicotiana tabacum HOM05D002095 ORTHO05D002058 7.2e-16 87.8 97 50.5
CAN.G208.15 Capsicum annuum HOM05D002095 ORTHO05D002058 9.4e-16 87.4 138 35.5
Atru.chr1.2434 Acer truncatum HOM05D002095 ORTHO05D002058 1.6e-15 86.7 140 37.9
COL.COLO4_31893 Corchorus olitorius HOM05D002095 ORTHO05D002058 1.6e-15 86.7 136 39.7
Nn1g07412 Nelumbo nucifera HOM05D002095 ORTHO05D002058 1.6e-15 86.7 136 41.2
Rhsim02G0101000 Rhododendron simsii HOM05D002095 ORTHO05D002058 1.6e-15 86.7 142 38.0
RcHm_v2.0_Chr5g0001431 Rosa chinensis HOM05D002095 ORTHO05D002058 1.6e-15 86.7 136 36.0
Sopen11g007100 Solanum pennellii HOM05D002095 ORTHO05D002058 1.6e-15 86.7 136 41.2
Sabra16G0015600 Salix brachista HOM05D002095 ORTHO05D002058 2.7e-15 85.9 111 42.3
TPR.G37019 Trifolium pratense HOM05D002095 ORTHO05D002058 2.7e-15 85.9 136 36.8
CDE04G0476 Ceratophyllum demersum HOM05D002095 ORTHO05D002058 3.6e-15 85.5 136 36.8
Rhsim02G0099700 Rhododendron simsii HOM05D002095 ORTHO05D002058 3.6e-15 85.5 142 37.3
TAR626G0534 Trochodendron aralioides HOM05D002095 ORTHO05D002058 3.6e-15 85.5 136 39.0
ClCG01G021450 Citrullus lanatus HOM05D002095 ORTHO05D002058 4.7e-15 85.1 138 34.1
ECA234G2065 Erigeron canadensis HOM05D002095 ORTHO05D002058 4.7e-15 85.1 138 39.1
HanXRQChr05g0129121 Helianthus annuus HOM05D002095 ORTHO05D002058 6.1e-15 84.7 128 38.3
Nitab4.5_0003626g0030 Nicotiana tabacum HOM05D002095 ORTHO05D002058 6.1e-15 84.7 97 48.5
Prupe.4G009700 Prunus persica HOM05D002095 ORTHO05D002058 6.1e-15 84.7 136 35.3
Sabra16G0002500 Salix brachista HOM05D002095 ORTHO05D002058 6.1e-15 84.7 111 41.4
Sed0012971 Sechium edule HOM05D002095 ORTHO05D002058 7.9e-15 84.3 138 34.8
MELO3C007439.2 Cucumis melo HOM05D002095 ORTHO05D002058 1.4e-14 83.6 138 34.1
FAN21G3943 Fragaria x ananassa HOM05D002095 ORTHO05D002058 1.4e-14 83.6 136 34.6
FAN25G0912 Fragaria x ananassa HOM05D002095 ORTHO05D002058 1.4e-14 83.6 136 34.6
Aqoxy1G04052 Aquilegia oxysepala HOM05D002095 ORTHO05D002058 1.8e-14 83.2 137 38.7
FvH4_3g00910 Fragaria vesca HOM05D002095 ORTHO05D002058 1.8e-14 83.2 136 33.8
Nitab4.5_0009725g0010 Nicotiana tabacum HOM05D002095 ORTHO05D002058 1.8e-14 83.2 116 39.7
Nitab4.5_0027831g0010 Nicotiana tabacum HOM05D002095 ORTHO05D002058 1.8e-14 83.2 116 39.7
Solyc11g012340.1 Solanum lycopersicum HOM05D002095 ORTHO05D002058 1.8e-14 83.2 105 47.6
Ca_21042_v3 Cicer arietinum L. HOM05D002095 ORTHO05D002058 2.3e-14 82.8 136 36.0
CsaV3_6G048470 Cucumis sativus L. HOM05D002095 ORTHO05D002058 3.0e-14 82.4 138 34.1
Nitab4.5_0000143g0150 Nicotiana tabacum HOM05D002095 ORTHO05D002058 3.9e-14 82.0 97 47.4
Gohir.A05G174800 Gossypium hirsutum HOM05D002095 ORTHO05D002058 6.7e-14 81.3 137 38.0
Gorai.009G183200 Gossypium raimondii HOM05D002095 ORTHO05D002058 6.7e-14 81.3 137 38.0
Gohir.D05G177800 Gossypium hirsutum HOM05D002095 ORTHO05D002058 8.8e-14 80.9 137 38.0
Lj4g0028234 Lotus japonicus HOM05D002095 ORTHO05D002058 1.5e-13 80.1 136 33.8
Medtr4g133120 Medicago truncatula HOM05D002095 ORTHO05D002058 4.4e-13 78.6 136 35.3
PGSC0003DMG400003284 Solanum tuberosum HOM05D002095 ORTHO05D002058 1.3e-12 77.0 107 38.3
arahy.Tifrunner.gnm1.ann1.M240R0 Arachis hypogaea HOM05D002095 ORTHO05D002058 2.8e-12 75.9 136 31.6
arahy.Tifrunner.gnm1.ann1.U26HEC Arachis hypogaea HOM05D002095 ORTHO05D002058 2.8e-12 75.9 136 32.4
PGSC0003DMG400025671 Solanum tuberosum HOM05D002095 ORTHO05D002058 6.3e-12 74.7 107 38.3
Aqoxy7G03068 Aquilegia oxysepala HOM05D002095 ORTHO05D002058 8.2e-12 74.3 137 35.0
Nitab4.5_0001735g0080 Nicotiana tabacum HOM05D002095 ORTHO05D002058 1.8e-11 73.2 71 54.9
Nitab4.5_0012929g0020 Nicotiana tabacum HOM05D002095 ORTHO05D002058 1.8e-11 73.2 71 54.9
QL05p069479 Quercus lobata HOM05D002095 ORTHO05D002058 1.8e-11 73.2 131 35.9
vmacro15763 Vaccinium macrocarpon HOM05D002095 ORTHO05D002058 1.8e-11 73.2 84 50.0
Nitab4.5_0000901g0010 Nicotiana tabacum HOM05D002095 ORTHO05D002058 2.4e-11 72.8 119 38.7
PGSC0003DMG400028257 Solanum tuberosum HOM05D002095 ORTHO05D002058 2.4e-11 72.8 108 42.6
MBI16_g31703_MAGBIO Magnolia biondii HOM05D002095 ORTHO05D002058 4.1e-11 72.0 136 35.3
Peaxi162Scf00070g00319 Petunia axillaris HOM05D002095 ORTHO05D002058 4.1e-11 72.0 95 43.2
RcHm_v2.0_Chr5g0001401 Rosa chinensis HOM05D002095 ORTHO05D002058 4.1e-11 72.0 87 44.8
Nitab4.5_0000625g0060 Nicotiana tabacum HOM05D002095 ORTHO05D002058 5.3e-11 71.6 119 37.8
Lalb_Chr15g0088021 Lupinus albus HOM05D002095 ORTHO05D002058 7.0e-11 71.2 138 30.4
THA.LOC104813609 Tarenaya hassleriana HOM05D002095 ORTHO05D002058 7.0e-11 71.2 136 33.8
AL6G47510 Arabidopsis lyrata HOM05D002095 ORTHO05D002058 9.1e-11 70.9 136 35.3
Sopen10g032940 Solanum pennellii HOM05D002095 ORTHO05D002058 1.2e-10 70.5 105 42.9
PGSC0003DMG400036912 Solanum tuberosum HOM05D002095 ORTHO05D002058 1.6e-10 70.1 135 31.9
Lalb_Chr18g0056991 Lupinus albus HOM05D002095 ORTHO05D002058 2.0e-10 69.7 137 33.6
AT4G12570 Arabidopsis thaliana HOM05D002095 ORTHO05D002058 2.6e-10 69.3 136 35.3
PGSC0003DMG400029319 Solanum tuberosum HOM05D002095 ORTHO05D002058 2.6e-10 69.3 92 41.3
CAN.G1039.12 Capsicum annuum HOM05D002095 ORTHO05D002058 7.7e-10 67.8 138 34.8
Solyc10g083470.2 Solanum lycopersicum HOM05D002095 ORTHO05D002058 1.0e-09 67.4 104 43.3
Peaxi162Scf00990g00013 Petunia axillaris HOM05D002095 ORTHO05D002058 1.3e-09 67.0 64 53.1
BcaB01g02625 Brassica carinata HOM05D002095 ORTHO05D002058 3.8e-09 65.5 140 30.0
BcaC04g21243 Brassica carinata HOM05D002095 ORTHO05D002058 6.5e-09 64.7 136 30.1
C09p33930 Brassica napus HOM05D002095 ORTHO05D002058 6.5e-09 64.7 136 30.1
BolC9t56229H Brassica oleracea HOM05D002095 ORTHO05D002058 6.5e-09 64.7 136 30.1
Pp3c17_650 Physcomitrium patens HOM05D002095 ORTHO05D002058 8.5e-09 64.3 137 32.1
Sed0004105 Sechium edule HOM05D002095 ORTHO05D002058 1.1e-08 63.9 137 29.2
A09p26780 Brassica napus HOM05D002095 ORTHO05D002058 1.5e-08 63.5 136 29.4
BraA09t38250Z Brassica rapa HOM05D002095 ORTHO05D002058 1.5e-08 63.5 136 29.4
Sed0005989 Sechium edule HOM05D002095 ORTHO05D002058 1.5e-08 63.5 136 32.4
PSO210G0245 Papaver somniferum HOM05D002095 ORTHO05D002058 1.9e-08 63.2 90 42.2
THA.LOC104806332 Tarenaya hassleriana HOM05D002095 ORTHO05D002058 1.9e-08 63.2 136 30.9
HPP92_022802 Vanilla planifolia HOM05D002095 ORTHO05D002058 1.9e-08 63.2 104 39.4
BcaB01g01753 Brassica carinata HOM05D002095 ORTHO05D002058 3.2e-08 62.4 136 28.7
PSO541G2599 Papaver somniferum HOM05D002095 ORTHO05D002058 3.2e-08 62.4 93 36.6
PSO675G0057 Papaver somniferum HOM05D002095 ORTHO05D002058 3.2e-08 62.4 93 36.6
CAN.G1039.13 Capsicum annuum HOM05D002095 ORTHO05D002058 4.2e-08 62.0 136 31.6
Thhalv10028412m.g Eutrema salsugineum HOM05D002095 ORTHO05D002058 4.2e-08 62.0 136 30.9
Pp3c12_560 Physcomitrium patens HOM05D002095 ORTHO05D002058 5.5e-08 61.6 137 32.1
Carub.0006s3184 Capsella rubella HOM05D002095 ORTHO05D002058 7.2e-08 61.2 136 32.4
PSO017G6689 Papaver somniferum HOM05D002095 ORTHO05D002058 9.4e-08 60.8 119 31.1
Sopen09g001130 Solanum pennellii HOM05D002095 ORTHO05D002058 1.6e-07 60.1 106 34.9
CARHR253600 Cardamine hirsuta HOM05D002095 ORTHO05D002058 2.1e-07 59.7 140 31.4
Aa31LG6G8680 Aethionema arabicum HOM05D002095 ORTHO05D002058 6.1e-07 58.2 97 39.2
PSO478G4965 Papaver somniferum HOM05D002095 ORTHO05D002058 6.1e-07 58.2 127 29.9
AagrBONN_evm.TU.Sc2ySwM_344.2802 Anthoceros agrestis HOM05D002095 ORTHO05D002058 8.0e-07 57.8 86 37.2
EL10Ac8g20196 Beta vulgaris HOM05D002095 ORTHO05D002058 1.0e-06 57.4 94 39.4
SEGI_25511 Sequoiadendron giganteum HOM05D002095 ORTHO05D002058 2.3e-06 56.2 137 29.2
ECA248G3011 Erigeron canadensis HOM05D002095 ORTHO05D002058 4.0e-06 55.5 140 29.3
C02p40610 Brassica napus HOM05D002095 ORTHO05D002058 6.7e-06 54.7 136 30.1


User provided reference genes

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