Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 0.0e+00 1773.1 943 100.0
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 7.8e-167 592.0 949 41.6
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 3.0e-166 590.1 970 40.0
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 3.9e-142 510.0 960 39.3
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.8e-139 501.1 889 38.7
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.6e-138 497.3 888 38.6
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 2.4e-123 447.6 971 33.7
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 3.6e-119 433.7 971 33.7
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.4e-118 431.8 1020 34.2
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 3.0e-118 430.6 920 34.8
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.6e-117 427.6 926 34.7
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.4e-115 421.8 902 36.0
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.0e-113 415.6 815 36.2
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.9e-113 414.1 872 34.4
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 2.9e-113 414.1 833 34.8
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 5.5e-112 409.8 844 36.5
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 7.2e-112 409.5 847 34.8
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.2e-111 408.7 854 36.2
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 8.0e-111 406.0 935 33.6
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 1.8e-110 404.8 909 34.9
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 2.3e-110 404.4 898 35.2
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.3e-110 404.4 950 32.0
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 5.2e-110 403.3 977 32.9
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 2.6e-109 401.0 927 33.1
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 4.4e-109 400.2 914 33.2
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 5.7e-109 399.8 876 34.1
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 2.8e-108 397.5 915 33.6
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.8e-107 394.8 959 32.0
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 5.4e-107 393.3 913 33.5
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 5.0e-105 386.7 895 33.0
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 8.5e-105 386.0 869 34.2
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 3.2e-104 384.0 971 31.6
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.4e-102 378.6 889 33.6
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 6.8e-102 376.3 957 32.6
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 1.8e-99 368.2 947 32.8
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 9.1e-99 365.9 602 39.2
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 4.5e-98 363.6 852 33.6
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 5.9e-98 363.2 850 34.5
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 7.7e-98 362.8 883 33.1
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.7e-97 361.7 973 32.0
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 6.6e-97 359.8 883 31.8
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.8e-91 341.7 882 32.4
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.7e-90 337.8 921 30.8
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.7e-89 335.1 852 33.0
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.3e-89 334.7 882 31.9
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.1e-88 332.4 905 31.5
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 3.3e-88 330.9 885 32.1
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.4e-86 325.5 935 31.0
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 7.5e-85 319.7 835 31.5
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.3e-84 318.9 834 31.2
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 2.2e-84 318.2 1022 30.2
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.7e-84 317.4 840 31.1
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.9e-83 315.1 805 31.8
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 5.4e-83 313.5 839 30.8
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 3.5e-82 310.8 890 29.8
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 3.5e-82 310.8 828 29.0
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 7.8e-82 309.7 947 30.7
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 3.0e-81 307.8 834 30.8
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 8.6e-81 306.2 1008 30.2
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 8.6e-81 306.2 897 31.0
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 2.8e-79 301.2 821 30.6
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 2.2e-76 291.6 819 31.5
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.9e-76 291.2 819 31.6
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 6.4e-76 290.0 820 30.9
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 8.3e-76 289.7 1011 29.1
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.1e-75 289.3 840 28.6
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.2e-74 285.8 991 29.5
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 1.2e-74 285.8 821 30.9
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 6.0e-74 283.5 825 28.8
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.0e-73 282.7 822 28.1
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 2.3e-73 281.6 844 29.1
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 5.1e-73 280.4 872 28.2
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 6.6e-73 280.0 835 30.9
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.5e-72 278.1 820 32.0
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 3.1e-70 271.2 820 31.3
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 8.9e-70 269.6 870 30.6
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.4e-67 262.3 493 38.7
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.4e-67 262.3 875 30.5
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 3.2e-67 261.2 809 29.4
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 1.2e-66 259.2 795 30.6
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.7e-66 258.1 840 29.6
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 2.7e-66 258.1 897 28.5
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.3e-65 255.8 772 31.2
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 1.9e-64 251.9 766 30.5
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 1.9e-64 251.9 766 30.5
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 1.9e-64 251.9 766 30.5
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 9.6e-64 249.6 825 27.5
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 4.7e-63 247.3 842 30.6
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 3.8e-60 237.7 904 28.4
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 1.1e-59 236.1 895 28.2
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.1e-59 236.1 852 27.0
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.2e-53 216.1 732 28.6
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 6.4e-52 210.3 258 47.7
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.3e-48 198.0 558 30.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 7.3e-48 196.8 775 26.3
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 1.1e-46 193.0 762 28.5
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 3.4e-45 188.0 353 35.7
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.9e-44 184.1 547 32.2
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 6.4e-44 183.7 341 36.4
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.4e-43 182.6 340 36.5
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 2.4e-43 181.8 501 30.1
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 7.4e-40 170.2 425 33.2
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 2.6e-37 161.8 314 33.8
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.5e-35 155.2 171 50.3
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 5.5e-35 154.1 539 28.4
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.6e-34 152.5 814 22.7
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 3.9e-33 147.9 251 40.6
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 5.1e-33 147.5 362 31.2
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 2.1e-31 142.1 675 24.9
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 4.5e-29 134.4 188 44.1
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.7e-28 132.5 143 53.1
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.5e-27 128.6 273 36.3
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 7.2e-27 127.1 180 43.9
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 2.1e-26 125.6 373 32.7
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 3.5e-26 124.8 183 39.3
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 6.1e-26 124.0 142 50.0
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.8e-25 122.5 183 42.1
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 3.9e-25 121.3 140 47.9
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 2.5e-24 118.6 230 37.4
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 3.3e-24 118.2 123 52.8
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 3.3e-24 118.2 139 46.8
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 2.8e-23 115.2 369 30.4
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.1e-22 113.2 247 34.8
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.8e-20 104.8 344 26.2
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.2e-19 101.7 353 25.8
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.0e-17 96.7 142 39.4
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.4e-17 96.3 727 22.8
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 5.7e-16 90.9 332 25.6
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 2.0e-13 82.4 338 27.2
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.9e-12 78.6 80 51.2
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.4e-11 76.3 375 27.7
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 1.2e-10 73.2 244 29.1
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 3.6e-10 71.6 72 50.0
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.4e-06 59.7 188 30.3


User provided reference genes

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