Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 0.0e+00 1453.0 705 100.0
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 0.0e+00 1099.0 708 76.0
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 0.0e+00 1087.4 709 75.7
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1081.6 707 74.8
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 0.0e+00 1080.9 719 73.9
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 4.8e-312 1074.7 707 74.7
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 2.1e-310 1068.5 705 74.2
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 2.8e-310 1068.1 710 74.5
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 6.2e-310 1067.0 714 73.7
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 1.1e-309 1066.2 707 73.1
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 1.1e-309 1066.2 706 73.7
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 1.4e-309 1065.8 710 74.5
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.2e-308 1062.8 711 73.8
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.0e-308 1062.0 703 73.8
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.6e-308 1061.6 705 72.6
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 9.9e-308 1059.7 706 73.8
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 9.9e-308 1059.7 707 73.6
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.9e-307 1058.1 708 73.4
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 2.9e-307 1058.1 706 73.1
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.1e-306 1056.2 706 73.4
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 5.5e-306 1053.9 706 73.1
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 1.6e-305 1052.4 706 73.5
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 1.6e-305 1052.4 706 73.7
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 2.7e-305 1051.6 706 73.2
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 6.0e-305 1050.4 733 71.4
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 7.9e-305 1050.0 711 73.3
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 2.3e-304 1048.5 707 73.6
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 5.1e-304 1047.3 707 73.3
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.1e-303 1046.2 705 72.9
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 1.5e-303 1045.8 706 72.9
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 5.6e-303 1043.9 707 71.7
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 7.4e-303 1043.5 708 71.6
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 9.6e-303 1043.1 707 72.6
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.6e-302 1042.3 707 71.7
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 3.7e-302 1041.2 706 72.4
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 6.2e-302 1040.4 707 72.3
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 2.4e-301 1038.5 710 72.1
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 4.0e-301 1037.7 706 71.8
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 5.3e-301 1037.3 705 71.1
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 6.9e-301 1036.9 707 71.4
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 1.2e-300 1036.2 707 71.6
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 3.4e-300 1034.6 707 72.1
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 3.8e-299 1031.2 721 69.9
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 8.4e-299 1030.0 706 72.2
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 8.4e-299 1030.0 706 72.2
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.4e-298 1029.2 706 71.2
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 1.4e-298 1029.2 707 71.7
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 3.5e-297 1024.6 709 71.1
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 1.3e-296 1022.7 706 70.8
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 6.7e-296 1020.4 706 70.4
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 4.3e-295 1017.7 709 70.8
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 4.3e-295 1017.7 706 71.0
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 7.4e-295 1016.9 760 68.3
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 2.1e-294 1015.4 707 70.0
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 3.7e-294 1014.6 707 70.2
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 6.3e-294 1013.8 701 70.5
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 2.4e-293 1011.9 705 70.9
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 5.3e-293 1010.7 707 71.0
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 9.0e-293 1010.0 707 70.0
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 1.2e-292 1009.6 707 69.7
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 1.5e-292 1009.2 706 70.5
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 2.0e-292 1008.8 707 69.7
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.6e-292 1006.9 713 70.1
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 5.0e-291 1004.2 705 69.8
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 8.4e-291 1003.4 707 70.2
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.9e-290 1002.3 707 69.2
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 2.5e-290 1001.9 708 69.5
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 7.2e-290 1000.3 708 69.6
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 9.3e-290 1000.0 707 69.2
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.6e-289 999.2 707 68.9
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 3.5e-289 998.0 707 69.2
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 2.3e-288 995.3 736 67.7
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 3.9e-288 994.6 707 68.9
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 3.9e-288 994.6 707 68.9
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 3.9e-288 994.6 707 68.9
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 5.1e-288 994.2 707 69.2
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 4.3e-287 991.1 709 68.8
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 5.7e-287 990.7 755 65.6
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 8.2e-286 986.9 734 67.2
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.1e-285 986.5 732 68.0
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.5e-284 982.6 706 69.7
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.1e-282 976.5 660 72.0
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 1.6e-281 972.6 687 70.9
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 1.3e-278 963.0 708 67.2
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.7e-278 962.6 710 65.8
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 3.7e-278 961.4 707 67.5
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 6.3e-278 960.7 734 65.1
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 1.3e-275 953.0 706 66.6
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 1.0e-272 943.3 707 66.2
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 2.3e-272 942.2 730 65.5
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 1.7e-270 936.0 706 66.4
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.8e-269 932.6 708 64.8
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 3.1e-269 931.8 652 71.8
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.3e-267 926.4 708 64.0
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 1.7e-267 926.0 709 62.9
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 3.8e-267 924.9 710 64.1
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 6.5e-267 924.1 745 63.0
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 9.4e-266 920.2 681 68.9
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 5.2e-264 914.4 648 70.5
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 2.4e-261 905.6 749 61.4
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 9.1e-261 903.7 709 63.0
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 3.5e-260 901.7 721 64.1
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 3.8e-259 898.3 852 56.9
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 5.0e-259 897.9 706 62.0
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 9.4e-258 893.6 706 63.0
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 2.1e-257 892.5 622 69.8
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 4.0e-256 888.3 709 61.4
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 2.0e-255 885.9 622 69.6
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 3.1e-253 878.6 709 61.1
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 5.0e-251 871.3 604 70.9
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 2.5e-250 869.0 665 67.5
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 2.9e-243 845.5 706 59.8
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 8.0e-241 837.4 918 51.6
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 2.7e-236 822.4 586 67.2
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.6e-228 796.6 707 57.6
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 2.3e-227 792.7 474 78.3
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 1.4e-224 783.5 556 68.5
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 3.9e-219 765.4 702 55.6
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.5e-218 762.7 709 55.3
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 1.4e-216 756.9 527 71.5
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 5.6e-194 681.8 723 50.6
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 4.6e-180 635.6 753 45.8
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 8.7e-179 631.3 718 48.5
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.1e-173 614.4 389 75.6
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.6e-172 610.5 692 47.8
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.1e-172 610.1 557 59.1
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 7.4e-170 601.7 708 47.9
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.8e-169 599.0 714 47.1
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 6.3e-169 598.6 337 84.0
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.4e-159 566.2 484 59.1
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 2.6e-151 540.0 702 43.9
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 3.5e-151 539.7 337 76.9
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 8.0e-148 528.5 423 64.5
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 4.1e-144 516.2 320 76.2
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.4e-136 490.3 276 84.1
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.0e-131 473.4 709 42.6
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.3e-121 441.4 342 65.2
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.8e-119 432.2 703 38.7
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 2.4e-112 410.6 337 63.5
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 9.5e-109 398.7 309 67.3
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 6.2e-108 396.0 707 36.5
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 2.3e-102 377.5 390 53.8
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 1.4e-96 358.2 288 63.2
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 1.1e-77 295.4 476 40.3
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 1.2e-74 285.4 494 36.8
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 5.8e-74 283.1 231 60.2
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 2.9e-73 280.8 476 37.4
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 6.0e-71 273.1 496 34.9
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 1.6e-68 265.0 360 44.4
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 4.9e-65 253.4 284 50.4
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.5e-65 253.1 201 58.7
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 2.1e-55 221.5 617 31.6
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.7e-50 203.0 328 39.3
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 6.3e-44 183.3 139 71.2
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.9e-40 171.8 145 65.5
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 7.2e-40 169.9 112 77.7
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 2.3e-38 164.9 227 44.9
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 5.5e-32 143.7 125 58.4
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 1.6e-31 142.1 108 63.0
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 2.6e-29 134.8 79 77.2
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 1.5e-24 119.0 63 87.3
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 4.7e-23 114.0 59 78.0
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 6.1e-23 113.6 61 75.4
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 2.0e-18 98.6 92 57.6
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 7.7e-18 96.7 69 62.3
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 2.5e-16 91.7 90 52.2
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 7.2e-16 90.1 159 36.5
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.2e-15 89.4 50 86.0
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 1.6e-15 89.0 65 69.2
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 6.8e-14 83.6 79 53.2
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 8.9e-14 83.2 50 78.0
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 1.2e-13 82.8 50 76.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 5.7e-13 80.5 57 70.2
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 1.4e-11 75.9 41 82.9
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 1.8e-11 75.5 47 78.7
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 1.0e-09 69.7 45 68.9
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 1.0e-09 69.7 74 52.7
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 2.3e-09 68.6 47 72.3
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 2.9e-09 68.2 48 60.4
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 6.6e-09 67.0 42 73.8
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 4.3e-08 64.3 37 78.4


User provided reference genes

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