Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1898.6 959 100.0
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1622.1 965 83.7
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1601.6 965 82.7
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1571.2 965 81.1
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1570.4 965 80.6
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1561.6 1016 77.7
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1560.4 965 80.1
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1556.2 965 80.2
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1553.9 965 80.1
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1545.4 965 80.3
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1521.9 965 78.3
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1516.9 965 77.9
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1516.5 965 78.7
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1509.6 965 77.8
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1507.3 965 77.4
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1505.0 965 78.1
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1503.0 986 77.4
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1502.3 965 77.1
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1500.7 965 76.8
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1499.6 965 77.7
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1499.6 965 77.8
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1499.2 965 77.6
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1497.6 965 77.1
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1495.7 964 77.6
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1493.4 965 77.4
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1491.5 984 77.4
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1488.8 985 77.4
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1481.8 965 76.7
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1476.8 965 76.4
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1474.5 965 76.4
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1472.2 965 76.3
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1470.3 965 75.9
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1467.6 965 75.8
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1463.7 965 74.1
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1461.4 965 75.6
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1461.0 965 76.0
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1461.0 965 74.9
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1459.9 1008 74.2
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1459.5 965 75.4
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1458.7 965 74.6
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1456.4 1033 72.9
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1451.8 967 75.0
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1448.0 973 74.2
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1447.6 966 74.7
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1447.2 948 76.9
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1444.5 973 74.6
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1441.4 966 74.5
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1435.6 965 73.7
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1432.2 965 74.6
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1426.8 965 73.1
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1422.9 965 74.0
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1418.7 960 74.5
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1417.9 947 75.5
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1413.7 966 73.1
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1412.5 965 73.9
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1410.6 966 73.0
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1409.4 965 72.4
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1407.1 965 72.3
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1406.7 966 73.2
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1403.3 985 71.9
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1402.9 993 71.7
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1402.1 966 72.6
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1399.8 965 72.8
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1398.3 967 72.5
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1396.7 972 72.6
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1395.9 965 72.0
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1387.9 965 73.0
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1375.9 965 73.1
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1367.8 842 81.6
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1362.8 1114 65.2
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1351.7 966 69.6
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1344.7 992 69.6
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1338.2 966 69.8
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1335.5 966 68.8
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1318.5 965 69.8
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1316.2 1086 65.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1260.4 966 64.4
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1256.1 849 76.3
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1255.4 868 73.3
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1233.0 1015 64.9
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1196.0 983 64.5
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1184.1 778 76.0
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1177.9 968 61.2
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1157.1 968 60.0
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1156.0 968 60.6
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1116.3 1024 59.9
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1082.0 969 55.0
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 1.4e-296 1023.1 984 58.3
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 2.1e-292 1009.2 978 53.8
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 9.7e-290 1000.3 751 67.0
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 9.8e-282 973.8 598 79.8
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 2.0e-274 949.5 991 51.3
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.8e-272 943.0 975 50.1
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 8.6e-262 907.5 965 52.6
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 1.7e-238 830.1 586 72.4
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 2.9e-225 786.2 475 81.3
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 4.2e-224 782.3 512 75.2
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 9.0e-195 684.9 518 68.7
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 3.0e-190 669.8 504 68.1
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 2.0e-186 657.1 389 81.7
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 2.9e-185 653.3 635 57.5
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.5e-176 623.6 459 68.8
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 5.2e-174 615.9 410 74.4
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.4e-160 568.5 701 49.6
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 7.3e-152 542.3 397 69.3
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.6e-143 514.6 517 55.3
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 7.5e-141 505.8 279 87.1
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 1.4e-126 458.4 328 71.0
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 4.0e-126 456.8 236 92.4
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 8.9e-126 455.7 285 79.6
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 2.4e-123 447.6 391 62.4
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.5e-109 400.2 289 67.5
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 2.5e-104 384.4 232 82.8
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.6e-103 380.6 204 89.2
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.9e-92 344.4 241 70.5
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 6.3e-87 326.6 700 34.7
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.2e-82 312.4 160 90.6
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 2.6e-72 278.1 259 50.2
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 3.7e-63 247.7 142 83.8
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 7.0e-62 243.4 182 68.7
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.2e-60 238.4 111 96.4
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 1.2e-42 179.5 105 81.0
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.5e-40 172.6 150 54.7
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 4.5e-37 161.0 148 53.4
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 1.3e-36 159.5 214 46.3
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 9.5e-35 153.3 125 61.6
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.6e-34 152.5 169 47.9
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 2.1e-34 152.1 114 66.7
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.6e-32 145.2 112 60.7
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 7.5e-32 143.7 67 98.5
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 6.4e-31 140.6 97 69.1
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 3.2e-30 138.3 70 90.0
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 7.8e-29 133.7 99 65.7
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 1.9e-27 129.0 90 67.8
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 6.2e-26 124.0 112 56.2
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 3.4e-24 118.2 86 65.1
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.6e-21 109.4 79 70.9
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 5.6e-19 100.9 73 67.1
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 3.1e-17 95.1 190 33.7
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 5.2e-17 94.4 67 68.7
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 8.3e-15 87.0 69 59.4
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 1.1e-14 86.7 109 49.5
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 5.1e-12 77.8 54 66.7
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 9.5e-11 73.6 50 70.0
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 2.8e-10 72.0 60 61.7
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 3.4e-08 65.1 45 66.7
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 3.4e-08 65.1 55 58.2
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 5.8e-08 64.3 44 70.5
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 5.8e-08 64.3 44 70.5
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 5.8e-08 64.3 44 70.5
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 9.9e-08 63.5 44 70.5
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 1.3e-07 63.2 55 58.2
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 2.9e-07 62.0 43 69.8
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 8.4e-07 60.5 44 65.9


User provided reference genes

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