Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 2181.0 1145 100.0
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1562.0 1177 71.8
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1562.0 1162 72.5
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1546.6 1155 72.1
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1544.6 1160 71.9
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1543.9 1172 71.2
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1543.1 1163 70.0
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1533.5 1145 71.7
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1532.3 1144 71.1
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1531.9 1157 71.2
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1529.2 1144 71.7
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1526.5 1156 70.8
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1519.2 1144 71.5
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1519.2 1146 72.7
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1518.1 1158 70.1
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1514.2 1160 69.7
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1513.0 1150 70.9
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1511.1 1168 69.6
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1505.0 1150 71.3
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1501.1 1149 71.6
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1500.3 1159 70.2
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1499.6 1147 69.9
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1499.6 1150 72.0
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1498.8 1146 69.5
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1497.3 1178 68.3
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1495.3 1177 70.1
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1493.8 1166 70.5
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1493.4 1149 69.8
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1489.6 1150 71.5
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1484.9 1162 70.9
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1484.5 1145 69.6
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1483.4 1160 68.6
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1482.6 1182 67.7
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1482.6 1163 70.3
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1481.5 1160 70.1
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1480.7 1152 69.4
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1479.2 1151 71.0
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1479.2 1160 68.6
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1474.5 1161 69.9
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1473.8 1160 70.3
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1473.8 1160 70.3
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1473.4 1160 70.3
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1469.9 1147 69.9
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1468.8 1150 69.6
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1465.7 1179 67.3
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1465.7 1153 69.2
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1463.0 1142 70.4
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1459.9 1191 67.0
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1458.0 1142 70.9
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1453.0 1157 68.8
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1451.0 1174 69.0
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1450.3 1141 70.0
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1449.1 1139 69.1
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1447.6 1191 67.2
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1444.5 1165 68.8
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1440.2 1154 68.4
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1438.7 1150 68.2
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1434.5 1146 69.1
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1421.0 1158 66.1
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1419.1 1155 67.2
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1410.6 1116 68.5
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1398.6 1179 65.6
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1397.9 1207 64.2
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1397.5 1147 67.7
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1397.1 1150 67.4
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1393.6 1150 67.3
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1390.2 1162 66.1
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1389.8 1169 66.6
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1389.4 1147 66.8
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1386.3 1147 66.7
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1379.0 1169 66.1
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1376.3 1169 66.0
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1376.3 1171 65.9
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1376.3 1175 66.1
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1375.1 1172 65.9
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1374.8 1170 66.0
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1374.0 1171 66.0
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1371.7 1174 65.7
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1369.0 1145 66.3
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1367.4 1143 66.6
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1360.1 1152 64.7
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1353.2 1172 63.7
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1347.4 1151 63.8
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1347.0 1155 65.5
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1345.5 934 77.4
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1340.5 1173 62.4
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1326.2 1219 61.7
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1258.8 893 75.3
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1163.3 1033 63.0
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1119.8 1238 52.3
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1111.3 1224 53.3
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1097.8 1225 53.4
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 0.0e+00 1080.9 730 75.9
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1075.8 920 65.1
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.0e-294 1016.1 1155 52.1
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.4e-271 938.3 742 67.4
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 1.1e-252 877.5 1391 41.3
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 1.3e-243 847.4 589 74.5
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 8.2e-243 844.7 590 76.3
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 3.6e-222 776.2 525 75.4
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 6.1e-222 775.4 525 75.4
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 9.4e-215 751.5 525 74.1
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 8.0e-214 748.4 624 63.3
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 4.1e-202 709.5 615 62.8
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 5.4e-186 656.0 600 61.8
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.1e-178 631.7 562 63.9
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.6e-174 617.8 1173 37.7
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 6.6e-168 595.9 555 60.4
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.9e-162 577.8 544 59.9
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.7e-145 520.8 463 63.3
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.0e-144 518.8 392 69.4
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 5.6e-135 486.5 545 52.5
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 3.7e-126 457.2 329 71.1
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.1e-125 453.8 335 71.9
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.1e-114 419.1 777 34.6
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.4e-106 392.1 548 46.5
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 5.5e-106 390.2 483 51.6
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.4e-101 375.6 367 58.9
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.4e-101 374.8 358 54.7
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.6e-100 371.3 377 55.4
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 3.2e-90 337.8 214 80.4
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 2.0e-87 328.6 217 75.6
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 9.8e-87 326.2 1188 27.5
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.6e-81 308.9 250 67.2
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 5.2e-80 303.9 253 58.1
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 3.7e-78 297.7 431 46.6
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 1.1e-66 259.6 247 60.3
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.3e-66 257.7 156 79.5
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 6.8e-64 250.4 149 85.9
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.0e-63 248.8 147 83.0
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.1e-61 241.1 198 62.1
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.2e-57 229.6 365 43.6
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 8.9e-56 223.4 359 44.0
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 1.7e-54 219.2 365 42.5
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 1.1e-53 216.5 365 42.2
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.1e-49 202.2 106 94.3
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-47 196.4 113 87.6
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.9e-46 191.8 111 87.4
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 6.4e-46 190.7 113 85.8
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-44 186.4 113 84.1
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 1.6e-44 186.0 113 84.1
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 2.5e-42 178.7 193 54.4
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 9.6e-42 176.8 587 29.0
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 2.1e-41 175.6 109 83.5
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 2.4e-40 172.2 106 83.0
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 4.9e-38 164.5 97 83.5
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.4e-37 162.2 99 81.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 4.2e-37 161.4 89 88.8
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 4.8e-33 147.9 82 90.2
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.9e-30 137.9 120 60.8
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 8.7e-27 127.1 184 41.8
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 3.1e-24 118.6 168 48.2
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 2.9e-22 112.1 85 64.7
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 2.9e-22 112.1 72 77.8
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 1.1e-21 110.2 75 77.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 3.2e-21 108.6 75 76.0
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 2.3e-19 102.4 71 70.4
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 1.1e-18 100.1 152 43.4
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 3.8e-06 58.5 45 68.9


User provided reference genes

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