Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 1.2e-135 486.5 251 100.0
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 6.0e-106 387.9 218 89.9
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 1.0e-105 387.1 217 90.8
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 3.0e-105 385.6 218 91.3
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 1.2e-103 380.2 218 89.4
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.6e-103 378.6 226 85.4
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 6.2e-103 377.9 218 87.2
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 1.1e-102 377.1 218 87.6
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 1.8e-102 376.3 218 86.2
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 4.0e-102 375.2 218 87.2
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 6.8e-102 374.4 218 89.0
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 2.6e-101 372.5 218 87.2
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 3.4e-101 372.1 218 87.2
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 4.4e-101 371.7 218 86.2
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 4.4e-101 371.7 218 87.2
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 4.4e-101 371.7 218 86.2
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 4.4e-101 371.7 217 87.1
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 5.8e-101 371.3 218 87.6
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 5.8e-101 371.3 216 86.6
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 7.6e-101 370.9 214 87.4
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 1.3e-100 370.2 218 86.2
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 1.3e-100 370.2 218 85.8
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 2.2e-100 369.4 217 86.2
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 2.9e-100 369.0 218 85.8
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 2.9e-100 369.0 218 85.8
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 2.9e-100 369.0 218 85.8
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 2.9e-100 369.0 218 85.8
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 3.8e-100 368.6 218 86.2
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 4.9e-100 368.2 211 88.2
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 4.9e-100 368.2 218 83.0
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 8.4e-100 367.5 218 86.2
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 1.1e-99 367.1 222 84.2
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 1.1e-99 367.1 218 82.6
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 1.1e-99 367.1 218 82.6
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 1.1e-99 367.1 218 84.4
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.4e-99 366.7 218 85.8
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 3.2e-99 365.5 218 84.9
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 4.2e-99 365.2 218 84.4
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 5.4e-99 364.8 218 85.3
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 7.1e-99 364.4 218 83.0
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 9.3e-99 364.0 218 83.5
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 9.3e-99 364.0 214 85.5
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 9.3e-99 364.0 218 83.5
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 9.3e-99 364.0 221 83.3
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 1.6e-98 363.2 218 84.9
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.6e-98 363.2 218 85.3
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 2.1e-98 362.8 218 84.9
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 2.1e-98 362.8 218 83.9
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 4.6e-98 361.7 220 86.8
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 6.0e-98 361.3 207 90.3
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 1.0e-97 360.5 216 83.8
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 1.0e-97 360.5 218 85.3
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 1.0e-97 360.5 218 84.4
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.0e-97 359.0 218 82.1
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 3.9e-97 358.6 214 85.5
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 3.9e-97 358.6 214 84.6
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 3.9e-97 358.6 214 84.6
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 3.9e-97 358.6 218 83.0
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 3.9e-97 358.6 218 82.6
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 5.1e-97 358.2 218 84.4
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 6.6e-97 357.8 209 85.2
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 8.7e-97 357.5 218 83.0
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 8.7e-97 357.5 214 84.1
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.1e-96 357.1 214 85.0
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 3.3e-96 355.5 218 82.1
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 3.3e-96 355.5 218 83.0
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 5.6e-96 354.8 214 83.2
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 9.6e-96 354.0 219 79.9
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 9.6e-96 354.0 218 79.8
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 4.8e-95 351.7 218 83.0
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 6.2e-95 351.3 221 80.5
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 1.4e-94 350.1 223 79.4
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.8e-94 349.7 209 86.1
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 2.4e-94 349.4 218 79.8
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 2.4e-94 349.4 206 86.4
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 3.1e-94 349.0 219 79.0
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 5.3e-94 348.2 307 64.2
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 9.0e-94 347.4 220 80.0
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 1.2e-93 347.1 196 89.3
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.4e-93 345.5 203 84.2
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 3.4e-93 345.5 202 85.1
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 3.4e-93 345.5 218 83.0
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 5.8e-93 344.7 207 83.6
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.3e-92 343.6 202 86.6
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 1.7e-92 343.2 218 78.4
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 2.2e-92 342.8 221 80.1
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 2.2e-92 342.8 207 83.6
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 2.9e-92 342.4 218 78.4
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 2.9e-92 342.4 218 79.4
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 2.4e-91 339.3 207 83.1
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 5.4e-91 338.2 219 78.5
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 9.3e-91 337.4 219 78.5
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 9.3e-91 337.4 219 78.5
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 1.2e-90 337.0 219 78.5
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 1.2e-90 337.0 219 78.5
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 1.0e-89 334.0 219 78.1
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.0e-89 334.0 203 79.8
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 2.3e-89 332.8 212 81.1
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 5.1e-89 331.6 214 79.0
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 6.6e-89 331.3 218 74.8
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 1.5e-88 330.1 214 78.5
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 9.6e-88 327.4 214 78.0
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.3e-87 327.0 211 79.6
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 6.9e-86 321.2 277 61.0
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 9.0e-86 320.9 214 79.0
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 7.6e-85 317.8 219 72.6
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 1.9e-80 303.1 185 82.7
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 3.3e-80 302.4 185 85.4
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 7.6e-77 291.2 164 86.6
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.7e-76 290.0 173 83.2
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 8.4e-76 287.7 203 73.9
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.2e-74 283.9 174 81.0
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 1.8e-73 280.0 217 61.8
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 1.1e-70 270.8 215 63.3
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.0e-68 264.2 210 62.4
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 3.0e-65 252.7 218 66.1
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 3.7e-63 245.7 210 60.0
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 8.2e-63 244.6 145 86.2
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 2.9e-60 236.1 139 83.5
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 4.2e-59 232.3 212 61.3
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 9.7e-56 221.1 145 78.6
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 1.4e-54 217.2 176 68.2
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 9.4e-51 204.5 148 75.7
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 2.3e-49 199.9 214 54.7
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 3.0e-49 199.5 119 84.9
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 2.2e-47 193.4 110 83.6
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 3.1e-46 189.5 171 59.1
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 2.0e-45 186.8 162 58.6
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 7.7e-37 158.3 216 48.1
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 6.3e-31 138.7 91 79.1
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 7.0e-30 135.2 84 82.1
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 1.3e-23 114.4 81 76.5
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.3e-20 104.4 53 92.5
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 1.4e-17 94.4 78 60.3
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 5.2e-17 92.4 52 82.7
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 2.0e-16 90.5 56 75.0
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 1.3e-12 77.8 88 51.1
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 2.3e-12 77.0 66 62.1
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 7.5e-08 62.0 34 85.3
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 2.2e-07 60.5 34 85.3
Nn8g41265 Nelumbo nucifera HOM05D005338 ORTHO05D276173 1.4e-06 57.8 26 96.2


User provided reference genes

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