Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g40129 Nelumbo nucifera HOM05D003897 ORTHO05D005095 1.2e-71 273.1 138 100.0
Nn8g38739 Nelumbo nucifera HOM05D003897 ORTHO05D005095 2.6e-26 122.5 72 76.4
Nn8g38737 Nelumbo nucifera HOM05D003897 ORTHO05D005095 7.5e-26 120.9 86 66.3
Nn3g20693 Nelumbo nucifera HOM05D003897 ORTHO05D005095 1.7e-22 109.8 76 69.7
Nn4g26537 Nelumbo nucifera HOM05D003897 ORTHO05D005095 1.0e-19 100.5 76 63.2
TAR628G0435 Trochodendron aralioides HOM05D003897 ORTHO05D005095 1.7e-14 83.2 76 55.3
Aqoxy6G02891 Aquilegia oxysepala HOM05D003897 ORTHO05D005095 5.0e-14 81.6 76 53.9
FvH4_2g05450 Fragaria vesca HOM05D003897 ORTHO05D005095 5.0e-14 81.6 76 52.6
FAN27G3036 Fragaria x ananassa HOM05D003897 ORTHO05D005095 5.0e-14 81.6 76 52.6
RcHm_v2.0_Chr6g0255731 Rosa chinensis HOM05D003897 ORTHO05D005095 5.0e-14 81.6 76 52.6
ATR0782G093 Amborella trichopoda HOM05D003897 ORTHO05D005095 6.6e-14 81.3 77 57.1
PSO541G0439 Papaver somniferum HOM05D003897 ORTHO05D005095 6.6e-14 81.3 76 51.3
PSO675G0875 Papaver somniferum HOM05D003897 ORTHO05D005095 6.6e-14 81.3 76 51.3
FAN15G0415 Fragaria x ananassa HOM05D003897 ORTHO05D005095 3.3e-13 79.0 76 51.3
MD10G1096200 Malus domestica HOM05D003897 ORTHO05D005095 4.3e-13 78.6 76 50.0
TWI31G0147 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 4.3e-13 78.6 76 51.3
TWI79G1683 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 4.3e-13 78.6 76 51.3
CDE04G0824 Ceratophyllum demersum HOM05D003897 ORTHO05D005095 7.3e-13 77.8 78 53.8
Gohir.D04G161200 Gossypium hirsutum HOM05D003897 ORTHO05D005095 7.3e-13 77.8 76 51.3
Gorai.012G149200 Gossypium raimondii HOM05D003897 ORTHO05D005095 7.3e-13 77.8 76 51.3
Ciclev10028849m.g Citrus clementina HOM05D003897 ORTHO05D005095 9.5e-13 77.4 77 51.9
Duzib248G1300 Durio zibethinus HOM05D003897 ORTHO05D005095 9.5e-13 77.4 76 50.0
Manes.07G075381 Manihot esculenta HOM05D003897 ORTHO05D005095 9.5e-13 77.4 76 51.3
Thecc.02G106100 Theobroma cacao HOM05D003897 ORTHO05D005095 9.5e-13 77.4 76 50.0
FAN20G3196 Fragaria x ananassa HOM05D003897 ORTHO05D005095 1.2e-12 77.0 76 50.0
MD05G1087400 Malus domestica HOM05D003897 ORTHO05D005095 1.2e-12 77.0 76 50.0
Pp3c14_9440 Physcomitrium patens HOM05D003897 ORTHO05D005095 1.2e-12 77.0 77 50.6
Prupe.8G132000 Prunus persica HOM05D003897 ORTHO05D005095 1.2e-12 77.0 76 50.0
Gohir.A04G119600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 1.6e-12 76.6 76 51.3
Gohir.A12G022600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 6.2e-12 74.7 76 48.7
Gohir.D12G023000 Gossypium hirsutum HOM05D003897 ORTHO05D005095 6.2e-12 74.7 76 48.7
Gorai.008G023500 Gossypium raimondii HOM05D003897 ORTHO05D005095 6.2e-12 74.7 76 48.7
Nitab4.5_0000027g0450 Nicotiana tabacum HOM05D003897 ORTHO05D005095 6.2e-12 74.7 111 40.5
Nitab4.5_0010998g0010 Nicotiana tabacum HOM05D003897 ORTHO05D005095 6.2e-12 74.7 111 40.5
Cc02_g19130 Coffea canephora HOM05D003897 ORTHO05D005095 8.1e-12 74.3 76 51.3
Dinv42183 Davidia involucrata HOM05D003897 ORTHO05D005095 8.1e-12 74.3 76 52.6
Mapoly0027s0025 Marchantia polymorpha HOM05D003897 ORTHO05D005095 8.1e-12 74.3 76 51.3
PGR042G2465 Punica granatum HOM05D003897 ORTHO05D005095 8.1e-12 74.3 76 48.7
Aa31LG8G13200 Aethionema arabicum HOM05D003897 ORTHO05D005095 1.8e-11 73.2 76 50.0
ClCG11G007460 Citrullus lanatus HOM05D003897 ORTHO05D005095 1.8e-11 73.2 76 47.4
THA.LOC104804386 Tarenaya hassleriana HOM05D003897 ORTHO05D005095 1.8e-11 73.2 76 50.0
CSS0022988 Camellia sinensis var. sinensis HOM05D003897 ORTHO05D005095 2.3e-11 72.8 76 48.7
Manes.10G077334 Manihot esculenta HOM05D003897 ORTHO05D005095 2.3e-11 72.8 76 47.4
Peaxi162Scf00188g00619 Petunia axillaris HOM05D003897 ORTHO05D005095 2.3e-11 72.8 76 48.7
VMungo0251G0352 Vigna mungo HOM05D003897 ORTHO05D005095 2.3e-11 72.8 76 48.7
MELO3C008589.2 Cucumis melo HOM05D003897 ORTHO05D005095 3.1e-11 72.4 76 47.4
CsaV3_2G010370 Cucumis sativus L. HOM05D003897 ORTHO05D005095 3.1e-11 72.4 76 47.4
Dinv15751 Davidia involucrata HOM05D003897 ORTHO05D005095 3.1e-11 72.4 76 51.3
Phvul.002G097400 Phaseolus vulgaris HOM05D003897 ORTHO05D005095 3.1e-11 72.4 76 47.4
BcaB03g16292 Brassica carinata HOM05D003897 ORTHO05D005095 4.0e-11 72.0 76 50.0
Thhalv10022739m.g Eutrema salsugineum HOM05D003897 ORTHO05D005095 4.0e-11 72.0 76 50.0
Hma1.2p1_0796F.1_g219060 Hydrangea macrophylla HOM05D003897 ORTHO05D005095 4.0e-11 72.0 76 48.7
Sp3g28700 Schrenkiella parvula HOM05D003897 ORTHO05D005095 4.0e-11 72.0 76 50.0
Solyc05g010300.4 Solanum lycopersicum HOM05D003897 ORTHO05D005095 4.0e-11 72.0 111 38.7
Sopen05g006070 Solanum pennellii HOM05D003897 ORTHO05D005095 4.0e-11 72.0 111 38.7
FAN24G2661 Fragaria x ananassa HOM05D003897 ORTHO05D005095 5.2e-11 71.6 76 51.3
Sed0005062 Sechium edule HOM05D003897 ORTHO05D005095 5.2e-11 71.6 76 47.4
CAN.G184.18 Capsicum annuum HOM05D003897 ORTHO05D005095 6.8e-11 71.2 111 40.5
MSTRG.27740 Avicennia marina HOM05D003897 ORTHO05D005095 2.0e-10 69.7 76 47.4
BcaC06g36057 Brassica carinata HOM05D003897 ORTHO05D005095 2.0e-10 69.7 76 47.4
A07p05280 Brassica napus HOM05D003897 ORTHO05D005095 2.0e-10 69.7 76 47.4
C07p08400 Brassica napus HOM05D003897 ORTHO05D005095 2.0e-10 69.7 76 47.4
BolC7t41254H Brassica oleracea HOM05D003897 ORTHO05D005095 2.0e-10 69.7 76 47.4
BraA07t28320Z Brassica rapa HOM05D003897 ORTHO05D005095 2.0e-10 69.7 76 47.4
DCAR_021998 Daucus carota HOM05D003897 ORTHO05D005095 2.0e-10 69.7 76 46.1
SGA_v2.0_scaffold13G06605 Striga asiatica HOM05D003897 ORTHO05D005095 2.0e-10 69.7 76 47.4
PSO063G1051 Papaver somniferum HOM05D003897 ORTHO05D005095 2.6e-10 69.3 77 48.1
Rhsim05G0087400 Rhododendron simsii HOM05D003897 ORTHO05D005095 2.6e-10 69.3 76 47.4
RhsimUnG0060800 Rhododendron simsii HOM05D003897 ORTHO05D005095 2.6e-10 69.3 76 47.4
vmacro19519 Vaccinium macrocarpon HOM05D003897 ORTHO05D005095 2.6e-10 69.3 76 47.4
AL3G47150 Arabidopsis lyrata HOM05D003897 ORTHO05D005095 3.4e-10 68.9 76 47.4
Cfa004562 Carpinus fangiana HOM05D003897 ORTHO05D005095 3.4e-10 68.9 76 48.7
CiPaw.06G170300 Carya illinoinensis HOM05D003897 ORTHO05D005095 3.4e-10 68.9 76 48.7
Haze_10156 Corylus avellana HOM05D003897 ORTHO05D005095 3.4e-10 68.9 76 48.7
ECA240G4340 Erigeron canadensis HOM05D003897 ORTHO05D005095 3.4e-10 68.9 76 46.1
Lsat_1_v5_gn_9_111421 Lactuca sativa HOM05D003897 ORTHO05D005095 4.4e-10 68.6 76 47.4
Zm00001eb095630 Zea mays HOM05D003897 ORTHO05D005095 4.4e-10 68.6 85 48.2
AagrBONN_evm.TU.Sc2ySwM_117.2300 Anthoceros agrestis HOM05D003897 ORTHO05D005095 5.8e-10 68.2 76 43.4
HanXRQChr16g0530591 Helianthus annuus HOM05D003897 ORTHO05D005095 5.8e-10 68.2 76 47.4
Oeu028249.2 Olea europaea HOM05D003897 ORTHO05D005095 5.8e-10 68.2 76 46.1
TPR.G13205 Trifolium pratense HOM05D003897 ORTHO05D005095 5.8e-10 68.2 76 46.1
Atru.chr5.2594 Acer truncatum HOM05D003897 ORTHO05D005095 7.5e-10 67.8 76 46.1
Atru.chr9.455 Acer truncatum HOM05D003897 ORTHO05D005095 7.5e-10 67.8 76 46.1
BcaB07g31789 Brassica carinata HOM05D003897 ORTHO05D005095 7.5e-10 67.8 76 48.7
Ca_18755_v3 Cicer arietinum L. HOM05D003897 ORTHO05D005095 7.5e-10 67.8 76 46.1
SGA_v2.0_scaffold393G50705 Striga asiatica HOM05D003897 ORTHO05D005095 7.5e-10 67.8 76 46.1
Actinidia27966 Actinidia chinensis HOM05D003897 ORTHO05D005095 9.8e-10 67.4 76 46.1
Carub.0003s2927 Capsella rubella HOM05D003897 ORTHO05D005095 9.8e-10 67.4 76 47.4
COL.COLO4_32614 Corchorus olitorius HOM05D003897 ORTHO05D005095 9.8e-10 67.4 76 50.0
Glyma.07G220900 Glycine max HOM05D003897 ORTHO05D005095 9.8e-10 67.4 76 44.7
QL11p034241 Quercus lobata HOM05D003897 ORTHO05D005095 9.8e-10 67.4 76 47.4
HanXRQChr03g0070231 Helianthus annuus HOM05D003897 ORTHO05D005095 1.3e-09 67.0 76 47.4
Lj5C213T4 Lonicera japonica HOM05D003897 ORTHO05D005095 1.3e-09 67.0 76 44.7
Thhalv10011661m.g Eutrema salsugineum HOM05D003897 ORTHO05D005095 1.7e-09 66.6 76 47.4
PSO782G0863 Papaver somniferum HOM05D003897 ORTHO05D005095 1.7e-09 66.6 77 46.8
Psat7g129720 Pisum sativum HOM05D003897 ORTHO05D005095 1.7e-09 66.6 76 48.7
Sabra09G0074900 Salix brachista HOM05D003897 ORTHO05D005095 1.7e-09 66.6 78 46.2
CANSAT25G1851 Cannabis sativa HOM05D003897 ORTHO05D005095 2.2e-09 66.2 76 44.7
Potri.009G097600 Populus trichocarpa HOM05D003897 ORTHO05D005095 2.2e-09 66.2 80 47.5
Ah.01g018040 Amaranthus hybridus HOM05D003897 ORTHO05D005095 2.9e-09 65.9 76 50.0
CBR_g49328 Chara braunii HOM05D003897 ORTHO05D005095 3.7e-09 65.5 76 47.4
Migut.N01173 Erythranthe guttata HOM05D003897 ORTHO05D005095 3.7e-09 65.5 76 46.1
Eucgr.G01370 Eucalyptus grandis HOM05D003897 ORTHO05D005095 3.7e-09 65.5 76 44.7
Glyma.20G019200 Glycine max HOM05D003897 ORTHO05D005095 3.7e-09 65.5 76 46.1
Lalb_Chr05g0219651 Lupinus albus HOM05D003897 ORTHO05D005095 3.7e-09 65.5 78 47.4
Medtr4g084150 Medicago truncatula HOM05D003897 ORTHO05D005095 3.7e-09 65.5 78 50.0
AT2G15430 Arabidopsis thaliana HOM05D003897 ORTHO05D005095 4.9e-09 65.1 76 46.1
SalBow3G0479 Salvia bowleyana HOM05D003897 ORTHO05D005095 4.9e-09 65.1 76 48.7
AL3G47140 Arabidopsis lyrata HOM05D003897 ORTHO05D005095 6.4e-09 64.7 76 44.7
Lj4g0008450 Lotus japonicus HOM05D003897 ORTHO05D005095 6.4e-09 64.7 76 44.7
Os09g0110400 Oryza sativa ssp. japonica HOM05D003897 ORTHO05D005095 6.4e-09 64.7 85 45.9
Sc18g0005670 Simmondsia chinensis HOM05D003897 ORTHO05D005095 6.4e-09 64.7 76 43.4
BcaC04g23047 Brassica carinata HOM05D003897 ORTHO05D005095 8.3e-09 64.3 76 48.7
C09p12730 Brassica napus HOM05D003897 ORTHO05D005095 8.3e-09 64.3 76 48.7
AUR62013252 Chenopodium quinoa HOM05D003897 ORTHO05D005095 8.3e-09 64.3 76 44.7
AUR62026162 Chenopodium quinoa HOM05D003897 ORTHO05D005095 8.3e-09 64.3 76 44.7
Lalb_Chr09g0328701 Lupinus albus HOM05D003897 ORTHO05D005095 8.3e-09 64.3 78 46.2
SMO367G1036 Selaginella moellendorffii HOM05D003897 ORTHO05D005095 1.1e-08 63.9 77 44.2
BolC9t54161H Brassica oleracea HOM05D003897 ORTHO05D005095 1.4e-08 63.5 76 44.7
EL10Ac9g22306 Beta vulgaris HOM05D003897 ORTHO05D005095 3.2e-08 62.4 76 44.7
A09p10760 Brassica napus HOM05D003897 ORTHO05D005095 5.4e-08 61.6 78 48.7
BraA09t36718Z Brassica rapa HOM05D003897 ORTHO05D005095 5.4e-08 61.6 78 48.7
AagrBONN_evm.TU.Sc2ySwM_362.1866 Anthoceros agrestis HOM05D003897 ORTHO05D005095 9.2e-08 60.8 77 39.0
SEGI_28988 Sequoiadendron giganteum HOM05D003897 ORTHO05D005095 1.2e-07 60.5 83 42.2
Hund06327 Selenicereus undatus HOM05D003897 ORTHO05D005095 1.6e-07 60.1 76 42.1
Nn4g24903 Nelumbo nucifera HOM05D003897 ORTHO05D275719 2.1e-07 59.7 55 56.4
arahy.Tifrunner.gnm1.ann1.7FBU4T Arachis hypogaea HOM05D003897 ORTHO05D005095 2.3e-06 56.2 80 38.8
arahy.Tifrunner.gnm1.ann1.9R7E2G Arachis hypogaea HOM05D003897 ORTHO05D005095 2.3e-06 56.2 80 38.8
Lj9C321G13 Lonicera japonica HOM05D003897 ORTHO05D005095 2.3e-06 56.2 76 44.7
AT2G15400 Arabidopsis thaliana HOM05D003897 ORTHO05D005095 6.6e-06 54.7 76 39.5


User provided reference genes

Program Settings