Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 1.7e-48 195.7 97 100.0
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 2.5e-12 75.5 45 77.8
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 5.3e-10 67.8 45 66.7
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 1.2e-09 66.6 45 66.7
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 4.5e-09 64.7 45 64.4
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 5.9e-09 64.3 55 56.4
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 5.9e-09 64.3 55 56.4
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 1.0e-08 63.5 45 66.7
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 1.0e-08 63.5 45 66.7
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 1.0e-08 63.5 55 54.5
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 1.3e-08 63.2 45 64.4
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 1.3e-08 63.2 45 64.4
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.7e-08 62.8 45 62.2
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 1.7e-08 62.8 45 62.2
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 1.7e-08 62.8 45 64.4
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 2.9e-08 62.0 45 62.2
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 3.8e-08 61.6 45 62.2
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 3.8e-08 61.6 48 62.5
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 5.0e-08 61.2 45 60.0
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 5.0e-08 61.2 45 60.0
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 5.0e-08 61.2 45 64.4
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 6.5e-08 60.8 45 60.0
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 6.5e-08 60.8 45 62.2
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 6.5e-08 60.8 45 62.2
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 6.5e-08 60.8 45 62.2
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 6.5e-08 60.8 45 66.7
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 6.5e-08 60.8 45 66.7
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 6.5e-08 60.8 55 52.7
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 8.5e-08 60.5 45 62.2
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 8.5e-08 60.5 45 60.0
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 1.1e-07 60.1 45 62.2
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 1.1e-07 60.1 45 62.2
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 1.1e-07 60.1 45 57.8
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 1.1e-07 60.1 45 64.4
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 1.4e-07 59.7 45 60.0
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 1.4e-07 59.7 45 64.4
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 1.4e-07 59.7 45 57.8
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 1.9e-07 59.3 45 60.0
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 1.9e-07 59.3 45 60.0
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 1.9e-07 59.3 45 62.2
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.9e-07 59.3 45 57.8
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 2.5e-07 58.9 45 60.0
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 2.5e-07 58.9 46 58.7
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 2.5e-07 58.9 45 60.0
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 2.5e-07 58.9 45 55.6
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 2.5e-07 58.9 45 57.8
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 2.5e-07 58.9 45 57.8
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 2.5e-07 58.9 45 57.8
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 3.2e-07 58.5 45 64.4
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 3.2e-07 58.5 45 64.4
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 3.2e-07 58.5 45 60.0
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 3.2e-07 58.5 45 62.2
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 3.2e-07 58.5 45 60.0
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 3.2e-07 58.5 45 60.0
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 3.2e-07 58.5 45 60.0
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 4.2e-07 58.2 42 64.3
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 4.2e-07 58.2 42 64.3
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 4.2e-07 58.2 45 55.6
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 4.2e-07 58.2 45 57.8
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 4.2e-07 58.2 45 57.8
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 4.2e-07 58.2 45 57.8
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 4.2e-07 58.2 45 55.6
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 5.5e-07 57.8 45 55.6
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 5.5e-07 57.8 45 60.0
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 5.5e-07 57.8 45 62.2
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 5.5e-07 57.8 45 62.2
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 5.5e-07 57.8 45 62.2
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 5.5e-07 57.8 45 60.0
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 5.5e-07 57.8 45 57.8
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 7.2e-07 57.4 45 57.8
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 7.2e-07 57.4 45 57.8
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 7.2e-07 57.4 45 57.8
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 7.2e-07 57.4 45 60.0
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 7.2e-07 57.4 45 55.6
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 7.2e-07 57.4 45 55.6
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 7.2e-07 57.4 43 60.5
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 7.2e-07 57.4 45 57.8
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 7.2e-07 57.4 45 57.8
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 7.2e-07 57.4 45 62.2
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 7.2e-07 57.4 45 60.0
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 7.2e-07 57.4 45 62.2
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 9.3e-07 57.0 45 57.8
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 9.3e-07 57.0 45 57.8
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 9.3e-07 57.0 45 57.8
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 9.3e-07 57.0 45 57.8
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 9.3e-07 57.0 45 62.2
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.2e-06 56.6 45 60.0
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 1.2e-06 56.6 45 57.8
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 1.2e-06 56.6 45 57.8
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 1.2e-06 56.6 45 57.8
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 1.2e-06 56.6 45 55.6
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 1.6e-06 56.2 45 55.6
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 1.6e-06 56.2 45 62.2
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 1.6e-06 56.2 45 55.6
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 2.1e-06 55.8 43 58.1
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 2.1e-06 55.8 45 55.6
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 2.7e-06 55.5 45 60.0
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 3.6e-06 55.1 45 57.8
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 4.6e-06 54.7 45 57.8
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 6.1e-06 54.3 45 57.8
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 6.1e-06 54.3 45 62.2


User provided reference genes

Program Settings