Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g38412 Nelumbo nucifera HOM05D003169 ORTHO05D003700 7.7e-112 407.1 202 100.0
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 5.3e-89 331.3 164 100.0
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 9.8e-83 310.5 169 90.5
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 1.1e-81 307.0 170 88.8
Ciclev10004277m.g Citrus clementina HOM05D003169 ORTHO05D003700 1.1e-81 307.0 170 88.2
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 4.1e-81 305.1 170 88.8
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 9.1e-81 303.9 182 83.5
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 4.5e-80 301.6 170 85.9
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 4.5e-80 301.6 170 87.1
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 1.7e-79 299.7 172 86.6
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 1.7e-79 299.7 170 85.3
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 6.6e-79 297.7 170 84.7
COL.COLO4_25000 Corchorus olitorius HOM05D003169 ORTHO05D003700 1.1e-78 297.0 168 87.5
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 1.5e-78 296.6 170 84.7
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 1.9e-78 296.2 170 87.1
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 3.3e-78 295.4 171 87.7
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 3.3e-78 295.4 171 87.7
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 3.3e-78 295.4 169 86.4
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 7.2e-78 294.3 163 88.3
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 7.2e-78 294.3 169 85.8
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 7.2e-78 294.3 169 85.8
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 7.2e-78 294.3 169 85.8
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 9.5e-78 293.9 170 84.7
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.2e-77 293.5 170 84.7
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 2.1e-77 292.7 170 86.5
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 4.7e-77 291.6 178 80.3
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 6.1e-77 291.2 170 86.5
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 8.0e-77 290.8 170 85.9
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 8.0e-77 290.8 177 80.2
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 1.8e-76 289.7 170 85.3
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 2.3e-76 289.3 170 81.8
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 3.0e-76 288.9 170 85.9
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 6.8e-76 287.7 170 82.9
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 6.8e-76 287.7 170 85.9
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 8.9e-76 287.3 176 81.2
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 1.2e-75 287.0 170 86.5
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 1.5e-75 286.6 163 88.3
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 2.0e-75 286.2 170 82.9
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 2.6e-75 285.8 164 87.2
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 2.6e-75 285.8 163 85.9
VMungo1127G0472 Vigna mungo HOM05D003169 ORTHO05D003700 3.4e-75 285.4 168 85.1
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 4.4e-75 285.0 170 82.4
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 4.4e-75 285.0 170 82.4
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 4.4e-75 285.0 170 82.4
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 4.4e-75 285.0 170 82.4
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 4.4e-75 285.0 170 82.4
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 1.3e-74 283.5 180 80.0
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 2.2e-74 282.7 171 81.3
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 2.8e-74 282.3 166 84.9
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 2.8e-74 282.3 166 84.3
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 3.7e-74 282.0 169 81.1
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 6.3e-74 281.2 169 81.1
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 8.3e-74 280.8 165 84.2
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 1.8e-73 279.6 169 80.5
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 1.8e-73 279.6 169 80.5
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 1.8e-73 279.6 172 84.3
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 2.4e-73 279.3 166 83.7
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 3.2e-73 278.9 169 80.5
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 3.2e-73 278.9 170 81.2
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 3.2e-73 278.9 171 81.3
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 4.1e-73 278.5 177 80.8
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 5.4e-73 278.1 170 81.8
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 7.0e-73 277.7 170 83.5
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 9.2e-73 277.3 170 80.6
Solyc10g005490.4 Solanum lycopersicum HOM05D003169 ORTHO05D003700 9.2e-73 277.3 180 78.3
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 9.2e-73 277.3 180 78.3
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 1.2e-72 276.9 165 83.0
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 1.6e-72 276.6 169 80.5
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 1.6e-72 276.6 170 79.4
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 2.0e-72 276.2 169 79.3
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 2.0e-72 276.2 169 79.3
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 2.0e-72 276.2 169 79.3
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 2.0e-72 276.2 169 79.3
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 2.0e-72 276.2 169 79.3
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 3.5e-72 275.4 180 77.8
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 4.5e-72 275.0 169 79.3
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 4.5e-72 275.0 170 80.6
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 5.9e-72 274.6 165 82.4
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 1.7e-71 273.1 169 78.7
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 2.9e-71 272.3 170 78.2
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.1e-70 270.4 182 75.3
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 2.5e-70 269.2 170 78.2
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 2.5e-70 269.2 170 78.8
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 5.6e-70 268.1 170 80.6
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 2.8e-69 265.8 163 77.3
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 3.6e-69 265.4 190 72.6
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 6.1e-69 264.6 160 81.2
Oeu005060.1 Olea europaea HOM05D003169 ORTHO05D003700 1.4e-68 263.5 170 78.2
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 1.8e-68 263.1 164 78.7
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 1.8e-68 263.1 160 82.5
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 1.2e-67 260.4 164 78.0
Ca_03187_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 1.3e-66 256.9 169 77.5
Ca_30144_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 1.3e-66 256.9 169 77.5
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 2.2e-66 256.1 169 75.7
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.9e-65 253.1 171 76.6
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 5.4e-65 251.5 170 75.3
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 9.2e-65 250.8 170 77.1
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 1.2e-64 250.4 154 79.2
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 1.2e-64 250.4 168 74.4
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 1.0e-63 247.3 168 73.2
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 1.0e-63 247.3 168 73.2
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 1.2e-61 240.4 171 71.9
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 1.2e-61 240.4 177 70.1
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 1.6e-61 240.0 171 73.1
Thhalv10000653m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 8.0e-61 237.7 172 71.5
Os08g0223766 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 8.0e-61 237.7 169 70.4
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 2.3e-60 236.1 163 76.1
Oeu029454.1 Olea europaea HOM05D003169 ORTHO05D003700 2.3e-60 236.1 154 75.3
Cpa.g.sc32.149 Carica papaya HOM05D003169 ORTHO05D003700 9.8e-59 230.7 184 67.4
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 2.2e-58 229.6 183 66.1
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 3.7e-58 228.8 175 66.9
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 6.4e-58 228.0 173 69.4
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 6.4e-58 228.0 169 68.6
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 1.4e-57 226.9 167 69.5
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 7.1e-57 224.6 178 64.0
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 4.6e-56 221.9 169 68.0
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 1.0e-55 220.7 185 67.6
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 4.3e-54 215.3 179 62.0
SEGI_24184 Sequoiadendron giganteum HOM05D003169 ORTHO05D000014 2.8e-53 212.6 169 65.1
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 4.0e-52 208.8 162 61.1
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 3.4e-51 205.7 186 59.7
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 3.2e-49 199.1 170 61.2
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 2.1e-48 196.4 174 58.6
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 1.3e-47 193.7 171 59.6
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 3.0e-47 192.6 140 67.1
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 1.8e-44 183.3 181 56.4
TPR.G3623 Trifolium pratense HOM05D003169 ORTHO05D003700 1.9e-41 173.3 168 56.5
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 1.2e-40 170.6 193 51.8
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 1.5e-30 137.1 169 45.0
Cc00_g09110 Coffea canephora HOM05D003169 ORTHO05D003700 7.3e-30 134.8 80 82.5
MBI18_g40795_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 1.6e-29 133.7 176 50.0
RhsimUnG0048600 Rhododendron simsii HOM05D003169 ORTHO05D003700 2.6e-27 126.3 74 82.4
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 1.3e-26 124.0 74 83.8
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 6.7e-23 111.7 144 47.2
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 1.8e-20 103.6 119 37.0
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 2.0e-19 100.1 115 41.7
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.0e-15 87.8 115 39.1
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 5.7e-14 82.0 121 41.3
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 8.2e-13 78.2 179 33.5
PRCOL_00005992 Prasinoderma coloniale HOM05D003169 ORTHO05D003700 1.2e-11 74.3 150 34.0
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 7.6e-11 71.6 138 35.5
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 3.8e-10 69.3 122 32.8
MELO3C035414.2 Cucumis melo HOM05D003169 ORTHO05D003700 6.7e-07 58.5 43 53.5


User provided reference genes

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