Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn7g37239 Nelumbo nucifera HOM05D000845 ORTHO05D001925 1.0e-61 240.0 127 100.0
TAR633G1717 Trochodendron aralioides HOM05D000845 ORTHO05D001925 5.5e-31 137.9 103 77.7
MBI13_g00564_MAGBIO Magnolia biondii HOM05D000845 ORTHO05D001925 1.2e-22 110.2 104 66.3
TAR636G0012 Trochodendron aralioides HOM05D000845 ORTHO05D001925 3.5e-22 108.6 102 67.6
QL07p015532 Quercus lobata HOM05D000845 ORTHO05D001925 5.1e-21 104.8 103 62.1
QL07p015562 Quercus lobata HOM05D000845 ORTHO05D001925 5.1e-21 104.8 103 62.1
CSS0031671 Camellia sinensis var. sinensis HOM05D000845 ORTHO05D001925 1.8e-18 96.3 105 58.1
Manes.08G067200 Manihot esculenta HOM05D000845 ORTHO05D001925 2.4e-18 95.9 103 63.1
TWI74G1038 Tripterygium wilfordii HOM05D000845 ORTHO05D001925 1.2e-17 93.6 103 58.3
PSO339G3335 Papaver somniferum HOM05D000845 ORTHO05D001925 2.0e-17 92.8 108 59.3
PSO384G4901 Papaver somniferum HOM05D000845 ORTHO05D001925 2.0e-17 92.8 108 59.3
Manes.09G002000 Manihot esculenta HOM05D000845 ORTHO05D001925 1.7e-16 89.7 102 55.9
Haze_20084 Corylus avellana HOM05D000861 ORTHO05D001925 1.1e-15 87.0 102 57.8
Sed0000345 Sechium edule HOM05D000845 ORTHO05D001925 7.2e-15 84.3 104 58.7
Cfa020106 Carpinus fangiana HOM05D000845 ORTHO05D001925 1.2e-14 83.6 102 54.9
Sc25g0005620 Simmondsia chinensis HOM05D000845 ORTHO05D001925 3.6e-14 82.0 98 52.0
MD01G1020300 Malus domestica HOM05D000845 ORTHO05D001925 7.9e-14 80.9 103 53.4
Potri.016G023800 Populus trichocarpa HOM05D000845 ORTHO05D001925 1.8e-13 79.7 104 57.7
CiPaw.09G161000 Carya illinoinensis HOM05D000845 ORTHO05D001925 2.3e-13 79.3 102 52.9
Potri.006G025600 Populus trichocarpa HOM05D000845 ORTHO05D001925 4.3e-12 75.1 104 53.8
Rhsim13G0201800 Rhododendron simsii HOM05D000845 ORTHO05D001925 7.4e-12 74.3 90 55.6
Aqoxy1G00102 Aquilegia oxysepala HOM05D000845 ORTHO05D001925 9.7e-12 73.9 104 56.7
CDE02G0521 Ceratophyllum demersum HOM05D000845 ORTHO05D001925 1.3e-11 73.6 105 51.4
Rhsim13G0201700 Rhododendron simsii HOM05D000845 ORTHO05D001925 1.3e-11 73.6 104 54.8
Lalb_Chr14g0365171 Lupinus albus HOM05D000845 ORTHO05D001925 2.2e-11 72.8 102 50.0
Actinidia24479 Actinidia chinensis HOM05D000845 ORTHO05D001925 3.7e-11 72.0 104 50.0
FAN23G1862 Fragaria x ananassa HOM05D000845 ORTHO05D001925 3.7e-11 72.0 104 47.1
Ah.04g149940 Amaranthus hybridus HOM05D000845 ORTHO05D001925 4.8e-11 71.6 103 49.5
Cfa010269 Carpinus fangiana HOM05D000845 ORTHO05D001925 6.3e-11 71.2 102 52.0
Haze_23678 Corylus avellana HOM05D000845 ORTHO05D001925 6.3e-11 71.2 102 52.0
Prupe.6G197500 Prunus persica HOM05D000845 ORTHO05D001925 8.2e-11 70.9 103 48.5
RcHm_v2.0_Chr2g0116621 Rosa chinensis HOM05D000845 ORTHO05D001925 8.2e-11 70.9 104 48.1
Sc19g0007750 Simmondsia chinensis HOM05D000845 ORTHO05D001925 8.2e-11 70.9 103 49.5
arahy.Tifrunner.gnm1.ann1.T9S3N5 Arachis hypogaea HOM05D000845 ORTHO05D001925 1.4e-10 70.1 95 52.6
Glyma.19G122900 Glycine max HOM05D000845 ORTHO05D001925 1.4e-10 70.1 107 50.5
arahy.Tifrunner.gnm1.ann1.RP4VSQ Arachis hypogaea HOM05D000845 ORTHO05D001925 1.8e-10 69.7 95 52.6
MD15G1332000 Malus domestica HOM05D000845 ORTHO05D001925 3.1e-10 68.9 71 62.0
AT2G41060 Arabidopsis thaliana HOM05D000845 ORTHO05D001925 4.1e-10 68.6 107 49.5
Actinidia06993 Actinidia chinensis HOM05D000845 ORTHO05D001925 5.3e-10 68.2 104 48.1
CSS0018362 Camellia sinensis var. sinensis HOM05D000845 ORTHO05D001925 6.9e-10 67.8 112 47.3
CiPaw.14G089700 Carya illinoinensis HOM05D000845 ORTHO05D001925 9.1e-10 67.4 102 51.0
AL5G38250 Arabidopsis lyrata HOM05D000845 ORTHO05D001925 1.2e-09 67.0 105 46.7
MELO3C020961.2 Cucumis melo HOM05D000845 ORTHO05D001925 1.2e-09 67.0 110 50.0
CsaV3_2G017690 Cucumis sativus L. HOM05D000845 ORTHO05D001925 1.2e-09 67.0 110 50.0
Phvul.001G100900 Phaseolus vulgaris HOM05D000845 ORTHO05D001925 1.2e-09 67.0 105 49.5
VMungo1383G3564 Vigna mungo HOM05D000845 ORTHO05D001925 1.2e-09 67.0 105 51.4
EL10Ac3g07387 Beta vulgaris HOM05D000845 ORTHO05D001925 2.6e-09 65.9 100 53.0
PGR142G0919 Punica granatum HOM05D000845 ORTHO05D001925 3.4e-09 65.5 103 46.6
AL4G39030 Arabidopsis lyrata HOM05D000845 ORTHO05D001925 4.5e-09 65.1 107 47.7
Sp4g23390 Schrenkiella parvula HOM05D000845 ORTHO05D001925 4.5e-09 65.1 107 46.7
TWI53G1304 Tripterygium wilfordii HOM05D000845 ORTHO05D001925 4.5e-09 65.1 103 45.6
ATR0307G074 Amborella trichopoda HOM05D000845 ORTHO05D001925 5.9e-09 64.7 119 44.5
Thhalv10005930m.g Eutrema salsugineum HOM05D000845 ORTHO05D001925 5.9e-09 64.7 105 44.8
CiPaw.14G089600 Carya illinoinensis HOM05D000845 ORTHO05D001925 7.7e-09 64.3 102 50.0
Lalb_Chr06g0174241 Lupinus albus HOM05D000845 ORTHO05D001925 7.7e-09 64.3 103 47.6
Ca_08336_v3 Cicer arietinum L. HOM05D000845 ORTHO05D001925 1.0e-08 63.9 106 46.2
Psat3g083240 Pisum sativum HOM05D000845 ORTHO05D001925 1.0e-08 63.9 106 46.2
CARHR136170 Cardamine hirsuta HOM05D000845 ORTHO05D001925 1.3e-08 63.5 108 45.4
Prupe.6G172000 Prunus persica HOM05D000845 ORTHO05D001925 1.3e-08 63.5 103 50.5
Carub.0005s2359 Capsella rubella HOM05D000845 ORTHO05D001925 1.7e-08 63.2 105 45.7
Lj1g0023973 Lotus japonicus HOM05D000845 ORTHO05D001925 1.7e-08 63.2 105 46.7
Oeu063622.2 Olea europaea HOM05D000845 ORTHO05D001925 2.9e-08 62.4 104 45.2
PGR042G0501 Punica granatum HOM05D000845 ORTHO05D001925 3.8e-08 62.0 103 44.7
CANSAT54G1775 Cannabis sativa HOM05D000845 ORTHO05D001925 6.5e-08 61.2 103 47.6
LjContig00564g0007147 Lotus japonicus HOM05D000845 ORTHO05D001925 8.5e-08 60.8 104 46.2
Ca_06163_v3 Cicer arietinum L. HOM05D000845 ORTHO05D001925 1.1e-07 60.5 103 46.6
DCAR_018977 Daucus carota HOM05D000845 ORTHO05D001925 1.4e-07 60.1 104 48.1
Hma1.2p1_0097F.1_g048100 Hydrangea macrophylla HOM05D000845 ORTHO05D001925 1.4e-07 60.1 108 52.8
Eucgr.F01459 Eucalyptus grandis HOM05D000845 ORTHO05D001925 1.9e-07 59.7 63 60.3
Sp5g05730 Schrenkiella parvula HOM05D000845 ORTHO05D001925 2.5e-07 59.3 105 44.8
BcaC07g39997 Brassica carinata HOM05D000845 ORTHO05D001925 3.2e-07 58.9 64 53.1
BolC8t50828H Brassica oleracea HOM05D000845 ORTHO05D001925 3.2e-07 58.9 64 53.1
Psat2g021680 Pisum sativum HOM05D000845 ORTHO05D001925 4.2e-07 58.5 103 45.6
CARHR167010 Cardamine hirsuta HOM05D000845 ORTHO05D001925 7.2e-07 57.8 64 51.6
Lsat_1_v5_gn_5_65320 Lactuca sativa HOM05D000845 ORTHO05D001925 7.2e-07 57.8 104 48.1
C08p32100 Brassica napus HOM05D000845 ORTHO05D001925 9.4e-07 57.4 64 51.6
SGA_v2.0_scaffold29G12154 Striga asiatica HOM05D000845 ORTHO05D001925 1.2e-06 57.0 107 43.0
Ciclev10011637m.g Citrus clementina HOM05D000845 ORTHO05D001925 2.1e-06 56.2 103 42.7
Thhalv10016684m.g Eutrema salsugineum HOM05D000845 ORTHO05D001925 2.1e-06 56.2 102 47.1
Duzib168G2188 Durio zibethinus HOM05D000845 ORTHO05D001925 2.7e-06 55.8 103 45.6
CDE04G1111 Ceratophyllum demersum HOM05D000845 ORTHO05D001925 3.6e-06 55.5 55 58.2
AUR62020954 Chenopodium quinoa HOM05D000845 ORTHO05D001925 4.7e-06 55.1 96 42.7
A09p49730 Brassica napus HOM05D000845 ORTHO05D001925 7.9e-06 54.3 64 50.0
BraA09t40426Z Brassica rapa HOM05D000845 ORTHO05D001925 7.9e-06 54.3 64 50.0
Cfa019890 Carpinus fangiana HOM05D000845 ORTHO05D001925 7.9e-06 54.3 103 48.5


User provided reference genes

Program Settings