Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn6g33800 Nelumbo nucifera HOM05D003302 ORTHO05D003785 2.8e-126 455.3 228 100.0
Dinv28907 Davidia involucrata HOM05D003302 ORTHO05D003785 6.4e-115 417.5 226 90.7
Nn1g00641 Nelumbo nucifera HOM05D003302 ORTHO05D003785 1.1e-114 416.8 226 92.5
Lj8P288T36 Lonicera japonica HOM05D003302 ORTHO05D003785 2.3e-112 409.1 226 85.8
Thecc.03G235300 Theobroma cacao HOM05D003302 ORTHO05D003785 3.3e-111 405.2 226 89.8
ClCG09G012410 Citrullus lanatus HOM05D003302 ORTHO05D003785 1.3e-110 403.3 226 87.2
QL12p007349 Quercus lobata HOM05D003302 ORTHO05D003785 1.3e-110 403.3 226 84.1
vmacro00359 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 1.3e-110 403.3 226 85.4
Nitab4.5_0004832g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 2.1e-110 402.5 226 84.5
Nitab4.5_0008694g0030 Nicotiana tabacum HOM05D003302 ORTHO05D003785 2.1e-110 402.5 226 84.5
Atru.chr6.1790 Acer truncatum HOM05D003302 ORTHO05D003785 3.6e-110 401.7 226 84.5
Rhsim04G0067200 Rhododendron simsii HOM05D003302 ORTHO05D003785 3.6e-110 401.7 226 84.1
TWI60G1391 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 6.2e-110 401.0 226 84.5
Gohir.A03G002901 Gossypium hirsutum HOM05D003302 ORTHO05D003785 1.1e-109 400.2 226 85.0
THA.LOC104798339 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 1.4e-109 399.8 226 86.3
CiPaw.12G059400 Carya illinoinensis HOM05D003302 ORTHO05D003785 1.8e-109 399.4 226 82.3
DCAR_005601 Daucus carota HOM05D003302 ORTHO05D003785 1.8e-109 399.4 226 81.9
Sed0026531 Sechium edule HOM05D003302 ORTHO05D003785 1.8e-109 399.4 226 81.9
COL.COLO4_17129 Corchorus olitorius HOM05D003302 ORTHO05D003785 3.1e-109 398.7 226 84.1
Oeu037876.2 Olea europaea HOM05D003302 ORTHO05D003785 6.9e-109 397.5 226 86.7
Potri.003G086801 Populus trichocarpa HOM05D003302 ORTHO05D003785 6.9e-109 397.5 226 84.1
Actinidia03397 Actinidia chinensis HOM05D003302 ORTHO05D003785 2.0e-108 396.0 226 81.0
MSTRG.1965 Avicennia marina HOM05D003302 ORTHO05D003785 2.0e-108 396.0 226 86.3
CAN.G572.44 Capsicum annuum HOM05D003302 ORTHO05D003785 2.6e-108 395.6 226 81.9
FAN08G3359 Fragaria x ananassa HOM05D003302 ORTHO05D003785 2.6e-108 395.6 226 83.6
Sabra03G0056500 Salix brachista HOM05D003302 ORTHO05D003785 2.6e-108 395.6 226 83.6
Solyc08g077385.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 4.4e-108 394.8 226 84.5
MELO3C003368.2 Cucumis melo HOM05D003302 ORTHO05D003785 5.8e-108 394.4 226 85.4
MD06G1041700 Malus domestica HOM05D003302 ORTHO05D003785 5.8e-108 394.4 226 85.0
Aa31LG9G6000 Aethionema arabicum HOM05D003302 ORTHO05D003785 7.6e-108 394.0 226 80.1
AT5G46920 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 7.6e-108 394.0 226 80.5
FAN04G1622 Fragaria x ananassa HOM05D003302 ORTHO05D003785 9.9e-108 393.7 226 82.7
Potri.001G147801 Populus trichocarpa HOM05D003302 ORTHO05D003785 9.9e-108 393.7 226 82.7
RcHm_v2.0_Chr7g0208021 Rosa chinensis HOM05D003302 ORTHO05D003785 1.3e-107 393.3 226 83.2
Sopen08g025970 Solanum pennellii HOM05D003302 ORTHO05D003785 1.3e-107 393.3 226 84.1
PGSC0003DMG400001864 Solanum tuberosum HOM05D003302 ORTHO05D003785 1.3e-107 393.3 226 84.1
AL8G11350 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 1.7e-107 392.9 226 80.1
FvH4_5g21000 Fragaria vesca HOM05D003302 ORTHO05D003785 1.7e-107 392.9 226 83.2
Sp2g11710 Schrenkiella parvula HOM05D003302 ORTHO05D003785 1.7e-107 392.9 226 80.1
Sc25g0000590 Simmondsia chinensis HOM05D003302 ORTHO05D003785 2.2e-107 392.5 226 81.4
Haze_08314 Corylus avellana HOM05D003302 ORTHO05D003785 2.9e-107 392.1 227 83.3
Haze_08315 Corylus avellana HOM05D003302 ORTHO05D003785 2.9e-107 392.1 227 83.3
FAN18G0007 Fragaria x ananassa HOM05D003302 ORTHO05D003785 3.8e-107 391.7 226 82.7
Actinidia25937 Actinidia chinensis HOM05D003302 ORTHO05D003785 8.4e-107 390.6 226 83.6
GSVIVG01023127001 Vitis vinifera HOM05D003302 ORTHO05D003785 8.4e-107 390.6 227 83.3
CsaV3_3G049580 Cucumis sativus L. HOM05D003302 ORTHO05D003785 1.1e-106 390.2 226 85.0
FAN13G0755 Fragaria x ananassa HOM05D003302 ORTHO05D003785 1.1e-106 390.2 226 83.2
CANSAT11G1544 Cannabis sativa HOM05D003302 ORTHO05D003785 1.9e-106 389.4 226 81.9
PGR142G3064 Punica granatum HOM05D003302 ORTHO05D003785 1.9e-106 389.4 226 84.5
unitig_62.g23447 Utricularia gibba HOM05D003302 ORTHO05D003785 2.4e-106 389.0 226 84.5
Duzib084G0162 Durio zibethinus HOM05D003302 ORTHO05D003785 3.2e-106 388.7 226 85.8
Prupe.5G048500 Prunus persica HOM05D003302 ORTHO05D003785 3.2e-106 388.7 226 85.4
Cpa.g.sc29.6 Carica papaya HOM05D003302 ORTHO05D003785 1.6e-105 386.3 226 82.3
Cfa012369 Carpinus fangiana HOM05D003302 ORTHO05D003785 2.7e-105 385.6 227 81.9
Manes.15G171966 Manihot esculenta HOM05D003302 ORTHO05D003785 2.7e-105 385.6 226 85.0
Duzib205G0194 Durio zibethinus HOM05D003302 ORTHO05D003785 7.8e-105 384.0 226 85.4
CDE12G0679 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 5.1e-104 381.3 227 80.2
Lalb_Chr18g0057931 Lupinus albus HOM05D003302 ORTHO05D003785 6.6e-104 380.9 226 81.0
HanXRQChr16g0522971 Helianthus annuus HOM05D003302 ORTHO05D003785 1.1e-103 380.2 227 79.7
Lsat_1_v5_gn_4_38500 Lactuca sativa HOM05D003302 ORTHO05D003785 1.1e-103 380.2 227 80.2
ECA248G2391 Erigeron canadensis HOM05D003302 ORTHO05D003785 3.3e-103 378.6 227 78.9
Aqoxy3G02548 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 4.3e-103 378.3 226 82.7
CDE06G1020 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 5.6e-103 377.9 227 78.9
HanXRQChr07g0188531 Helianthus annuus HOM05D003302 ORTHO05D003785 9.6e-103 377.1 227 78.9
C07p30510 Brassica napus HOM05D003302 ORTHO05D003785 1.3e-102 376.7 227 79.3
BolC7t43592H Brassica oleracea HOM05D003302 ORTHO05D003785 1.3e-102 376.7 227 79.3
arahy.Tifrunner.gnm1.ann1.HY98G0 Arachis hypogaea HOM05D003302 ORTHO05D003785 1.6e-102 376.3 226 78.3
BraA06t27414Z Brassica rapa HOM05D003302 ORTHO05D003785 1.6e-102 376.3 227 79.3
EL10Ac5g11380 Beta vulgaris HOM05D003302 ORTHO05D003785 2.1e-102 375.9 227 79.7
AUR62025829 Chenopodium quinoa HOM05D003302 ORTHO05D003785 2.1e-102 375.9 227 80.6
PSO063G6934 Papaver somniferum HOM05D003302 ORTHO05D003785 2.1e-102 375.9 226 79.2
arahy.Tifrunner.gnm1.ann1.K481AV Arachis hypogaea HOM05D003302 ORTHO05D003785 3.6e-102 375.2 226 77.9
Ca_00809_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 3.6e-102 375.2 226 81.0
A06p45460 Brassica napus HOM05D003302 ORTHO05D003785 6.2e-102 374.4 227 76.7
AUR62029877 Chenopodium quinoa HOM05D003302 ORTHO05D003785 6.2e-102 374.4 227 80.6
Psat1g168040 Pisum sativum HOM05D003302 ORTHO05D003785 3.1e-101 372.1 226 77.9
Rhsim11G0009600 Rhododendron simsii HOM05D003302 ORTHO05D003785 3.1e-101 372.1 226 79.6
PSO782G0278 Papaver somniferum HOM05D003302 ORTHO05D003785 4.5e-100 368.2 226 78.8
TPR.G26325 Trifolium pratense HOM05D003302 ORTHO05D003785 5.8e-100 367.9 226 77.0
ATR0827G173 Amborella trichopoda HOM05D003302 ORTHO05D003785 4.2e-98 361.7 228 79.4
TAR375G0955 Trochodendron aralioides HOM05D003302 ORTHO05D003785 4.2e-98 361.7 226 81.0
SHI07509 Sapria himalayana HOM05D003302 ORTHO05D003785 7.9e-97 357.5 226 76.5
CAN.G289.41 Capsicum annuum HOM05D003302 ORTHO05D003785 8.7e-96 354.0 203 80.8
Phvul.006G128900 Phaseolus vulgaris HOM05D003302 ORTHO05D003785 1.3e-94 350.1 226 76.1
Glyma.09G023300 Glycine max HOM05D003302 ORTHO05D003785 4.8e-94 348.2 226 76.5
Glyma.15G129400 Glycine max HOM05D003302 ORTHO05D003785 1.4e-93 346.7 226 76.1
VMungo0540G1460 Vigna mungo HOM05D003302 ORTHO05D003785 1.4e-93 346.7 227 75.3
SEGI_25417 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 1.0e-88 330.5 227 70.9
Gohir.D03G169466 Gossypium hirsutum HOM05D003302 ORTHO05D003785 1.8e-88 329.7 226 73.9
Zm00001eb004560 Zea mays HOM05D003302 ORTHO05D003785 3.7e-86 322.0 227 69.6
Os10g0567500 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 1.8e-85 319.7 228 71.1
Zm00001eb210180 Zea mays HOM05D003302 ORTHO05D003785 4.0e-85 318.5 227 68.7
SEGI_34960 Sequoiadendron giganteum HOM05D003302 ORTHO05D003785 4.6e-81 305.1 227 66.5
ATR0665G386 Amborella trichopoda HOM05D003302 ORTHO05D003785 4.1e-77 292.0 204 69.6
ATR0064G047 Amborella trichopoda HOM05D003302 ORTHO05D003785 2.9e-75 285.8 236 59.3
Psat1g190600 Pisum sativum HOM05D003302 ORTHO05D003785 8.5e-75 284.3 226 61.1
CAN.G572.51 Capsicum annuum HOM05D003302 ORTHO05D003785 1.4e-74 283.5 172 79.1
Glyma.15G094350 Glycine max HOM05D003302 ORTHO05D003785 3.2e-74 282.3 233 57.9
Nn3g20766 Nelumbo nucifera HOM05D003302 ORTHO05D003785 1.2e-73 280.4 227 62.1
Potri.004G132450 Populus trichocarpa HOM05D003302 ORTHO05D003785 1.6e-73 280.0 227 61.7
arahy.Tifrunner.gnm1.ann1.JNH5N4 Arachis hypogaea HOM05D003302 ORTHO05D003785 2.1e-73 279.6 230 59.1
Aqoxy1G01714 Aquilegia oxysepala HOM05D003302 ORTHO05D003785 3.6e-73 278.9 229 59.4
arahy.Tifrunner.gnm1.ann1.VBQQ6F Arachis hypogaea HOM05D003302 ORTHO05D003785 3.6e-73 278.9 230 57.8
THA.LOC104820647 Tarenaya hassleriana HOM05D003302 ORTHO05D003785 3.6e-73 278.9 237 57.4
CANSAT35G0225 Cannabis sativa HOM05D003302 ORTHO05D003785 6.1e-73 278.1 230 58.7
Lalb_Chr15g0086841 Lupinus albus HOM05D003302 ORTHO05D003785 6.1e-73 278.1 228 58.3
VMungo0540G2182 Vigna mungo HOM05D003302 ORTHO05D003785 1.0e-72 277.3 230 59.1
Lj1P1187T27 Lonicera japonica HOM05D003302 ORTHO05D003785 1.8e-72 276.6 233 58.4
Atru.chr10.1237 Acer truncatum HOM05D003302 ORTHO05D003785 2.3e-72 276.2 230 56.5
Sabra04G0085500 Salix brachista HOM05D003302 ORTHO05D003785 2.3e-72 276.2 228 61.4
QL10p038886 Quercus lobata HOM05D003302 ORTHO05D003785 3.0e-72 275.8 227 61.7
Dinv30741 Davidia involucrata HOM05D003302 ORTHO05D003785 3.9e-72 275.4 232 59.9
FAN21G1953 Fragaria x ananassa HOM05D003302 ORTHO05D003785 1.1e-71 273.9 230 57.4
CiPaw.09G124000 Carya illinoinensis HOM05D003302 ORTHO05D003785 1.5e-71 273.5 230 61.3
Ca_00544_v3 Cicer arietinum L. HOM05D003302 ORTHO05D003785 2.0e-71 273.1 225 59.1
MELO3C002733.2 Cucumis melo HOM05D003302 ORTHO05D003785 2.5e-71 272.7 228 57.5
FvH4_3g05620 Fragaria vesca HOM05D003302 ORTHO05D003785 2.5e-71 272.7 230 57.4
TWI38G0102 Tripterygium wilfordii HOM05D003302 ORTHO05D003785 4.3e-71 271.9 229 59.0
CsaV3_1G032460 Cucumis sativus L. HOM05D003302 ORTHO05D003785 5.7e-71 271.6 228 60.1
FAN11G3285 Fragaria x ananassa HOM05D003302 ORTHO05D003785 5.7e-71 271.6 231 57.1
Sc05g0006220 Simmondsia chinensis HOM05D003302 ORTHO05D003785 7.4e-71 271.2 234 60.7
Solyc01g112025.1 Solanum lycopersicum HOM05D003302 ORTHO05D003785 9.7e-71 270.8 226 56.2
Aa31LG6G5650 Aethionema arabicum HOM05D003302 ORTHO05D003785 1.3e-70 270.4 234 54.3
ClCG03G006880 Citrullus lanatus HOM05D003302 ORTHO05D003785 1.7e-70 270.0 226 56.2
PGR083G1399 Punica granatum HOM05D003302 ORTHO05D003785 1.7e-70 270.0 228 57.9
CAN.G1235.21 Capsicum annuum HOM05D003302 ORTHO05D003785 2.2e-70 269.6 227 56.8
MD05G1284200 Malus domestica HOM05D003302 ORTHO05D003785 2.2e-70 269.6 229 59.8
Sp1g25890 Schrenkiella parvula HOM05D003302 ORTHO05D003785 2.2e-70 269.6 238 54.6
CARHR029380 Cardamine hirsuta HOM05D003302 ORTHO05D003785 2.8e-70 269.2 239 54.8
Nitab4.5_0000165g0160 Nicotiana tabacum HOM05D003302 ORTHO05D003785 2.8e-70 269.2 230 56.5
Hma1.2p1_0053F.1_g030960 Hydrangea macrophylla HOM05D003302 ORTHO05D003785 4.8e-70 268.5 231 55.8
PGSC0003DMG400018655 Solanum tuberosum HOM05D003302 ORTHO05D003785 6.3e-70 268.1 231 58.0
MBI07_g26352_MAGBIO Magnolia biondii HOM05D003302 ORTHO05D003785 8.2e-70 267.7 234 57.7
COL.COLO4_29330 Corchorus olitorius HOM05D003302 ORTHO05D003785 1.1e-69 267.3 232 58.6
Sopen01g054090 Solanum pennellii HOM05D003302 ORTHO05D003785 1.4e-69 266.9 227 55.5
SGA_v2.0_scaffold1G00170 Striga asiatica HOM05D003302 ORTHO05D003785 1.8e-69 266.5 231 57.6
TAR629G3501 Trochodendron aralioides HOM05D003302 ORTHO05D003785 2.4e-69 266.2 228 60.1
CDE11G0149 Ceratophyllum demersum HOM05D003302 ORTHO05D003785 3.1e-69 265.8 226 57.5
Haze_05590 Corylus avellana HOM05D003302 ORTHO05D003785 3.1e-69 265.8 229 58.5
DCAR_003918 Daucus carota HOM05D003302 ORTHO05D003785 3.1e-69 265.8 230 56.5
BraA09t39172Z Brassica rapa HOM05D003302 ORTHO05D003785 4.1e-69 265.4 236 52.5
AT1G30010 Arabidopsis thaliana HOM05D003302 ORTHO05D003785 9.1e-69 264.2 243 53.5
PSO541G5669 Papaver somniferum HOM05D003302 ORTHO05D003785 9.1e-69 264.2 243 53.5
A09p36490 Brassica napus HOM05D003302 ORTHO05D003785 1.2e-68 263.8 238 52.5
Cfa000950 Carpinus fangiana HOM05D003302 ORTHO05D003785 1.2e-68 263.8 229 58.5
Gohir.A11G314450 Gossypium hirsutum HOM05D003302 ORTHO05D003785 1.2e-68 263.8 234 56.0
Nitab4.5_0011942g0010 Nicotiana tabacum HOM05D003302 ORTHO05D003785 1.2e-68 263.8 231 57.6
Gohir.D11G331550 Gossypium hirsutum HOM05D003302 ORTHO05D003785 2.0e-68 263.1 234 55.1
AL1G43900 Arabidopsis lyrata HOM05D003302 ORTHO05D003785 2.6e-68 262.7 238 54.6
Manes.17G069108 Manihot esculenta HOM05D003302 ORTHO05D003785 2.6e-68 262.7 230 58.7
Oeu034153.1 Olea europaea HOM05D003302 ORTHO05D003785 2.6e-68 262.7 229 55.9
PSO675G7265 Papaver somniferum HOM05D003302 ORTHO05D003785 2.6e-68 262.7 243 51.9
BcaC05g27013 Brassica carinata HOM05D003302 ORTHO05D003785 3.4e-68 262.3 238 53.4
C05p28800 Brassica napus HOM05D003302 ORTHO05D003785 3.4e-68 262.3 238 53.4
BolC5t31597H Brassica oleracea HOM05D003302 ORTHO05D003785 3.4e-68 262.3 238 53.4
Duzib128G1415 Durio zibethinus HOM05D003302 ORTHO05D003785 3.4e-68 262.3 233 57.5
Thecc.05G173100 Theobroma cacao HOM05D003302 ORTHO05D003785 3.4e-68 262.3 235 57.0
SHI24871 Sapria himalayana HOM05D003302 ORTHO05D003785 1.3e-67 260.4 231 55.8
RcHm_v2.0_Chr5g0014061 Rosa chinensis HOM05D003302 ORTHO05D003785 2.9e-67 259.2 228 54.8
Os12g0407300 Oryza sativa ssp. japonica HOM05D003302 ORTHO05D003785 1.9e-66 256.5 235 51.5
AUR62002753 Chenopodium quinoa HOM05D003302 ORTHO05D003785 3.2e-66 255.8 233 52.8
unitig_32.g11443 Utricularia gibba HOM05D003302 ORTHO05D003785 4.2e-66 255.4 230 52.6
Ah.09g232620 Amaranthus hybridus HOM05D003302 ORTHO05D003785 5.5e-66 255.0 232 53.0
Zm00001eb006520 Zea mays HOM05D003302 ORTHO05D003785 3.6e-65 252.3 236 50.0
EL10Ac4g07785 Beta vulgaris HOM05D003302 ORTHO05D003785 3.0e-64 249.2 236 55.1
Rhsim13G0194800 Rhododendron simsii HOM05D003302 ORTHO05D003785 3.9e-64 248.8 235 54.9
HPP92_002850 Vanilla planifolia HOM05D003302 ORTHO05D003785 1.5e-63 246.9 234 52.1
vmacro03962 Vaccinium macrocarpon HOM05D003302 ORTHO05D003785 4.8e-62 241.9 266 46.2
Lsat_1_v5_gn_8_116740 Lactuca sativa HOM05D003302 ORTHO05D003785 1.5e-60 236.9 228 51.3
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 2.9e-59 232.6 226 50.9
HanXRQChr15g0486511 Helianthus annuus HOM05D003302 ORTHO05D003785 5.0e-59 231.9 229 52.0
VMungo0051G0001 Vigna mungo HOM05D003302 ORTHO05D003785 2.5e-58 229.6 156 73.1
ATR1091G061 Amborella trichopoda HOM05D003302 ORTHO05D003785 3.6e-49 199.1 233 48.1
arahy.Tifrunner.gnm1.ann1.G4BUBZ Arachis hypogaea HOM05D003302 ORTHO05D003785 5.7e-47 191.8 210 46.7
HPP92_007162 Vanilla planifolia HOM05D003302 ORTHO05D003785 1.1e-45 187.6 102 79.4
EL10Ac8g19691 Beta vulgaris HOM05D003302 ORTHO05D003785 1.4e-45 187.2 205 49.8
TAR383G0945 Trochodendron aralioides HOM05D003302 ORTHO05D003785 1.2e-39 167.5 171 60.8
AUR62030203 Chenopodium quinoa HOM05D003302 ORTHO05D003785 8.6e-35 151.4 225 36.9
RhsimUnG0048900 Rhododendron simsii HOM05D003302 ORTHO05D003785 2.5e-34 149.8 107 72.9
Actinidia19525 Actinidia chinensis HOM05D003302 ORTHO05D003785 6.1e-33 145.2 225 37.8
Cpa.g.sc166.11 Carica papaya HOM05D003302 ORTHO05D003785 1.2e-20 104.4 114 48.2
Dinv32258 Davidia involucrata HOM05D003302 ORTHO05D003785 5.2e-16 89.0 84 52.4
AagrBONN_evm.TU.Sc2ySwM_344.5534 Anthoceros agrestis HOM05D003302 ORTHO05D003785 1.9e-10 70.5 236 24.6
MD10G1262600 Malus domestica HOM05D003302 ORTHO05D003785 4.7e-09 65.9 43 67.4


User provided reference genes

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