Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29006 Nelumbo nucifera HOM05D000725 ORTHO05D004053 3.3e-112 408.3 194 100.0
Nn1g09202 Nelumbo nucifera HOM05D000725 ORTHO05D004053 3.3e-104 381.7 192 93.8
Nn2g14108 Nelumbo nucifera HOM05D000725 ORTHO05D004053 1.6e-95 352.8 185 91.9
Nn6g34612 Nelumbo nucifera HOM05D000725 ORTHO05D004053 5.3e-94 347.8 175 94.3
Nn2g15117 Nelumbo nucifera HOM05D000725 ORTHO05D004053 2.2e-79 299.3 154 92.9
Nn2g12181 Nelumbo nucifera HOM05D000725 ORTHO05D004053 6.5e-76 287.7 153 91.5
Nn1g06958 Nelumbo nucifera HOM05D000725 ORTHO05D004053 3.0e-73 278.9 154 89.0
Nn2g14179 Nelumbo nucifera HOM05D002850 ORTHO05D004053 2.6e-48 196.1 102 93.1
CSS0025020 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 2.4e-38 162.9 157 51.0
Cfa001267 Carpinus fangiana HOM05D000725 ORTHO05D004053 1.6e-37 160.2 168 44.6
Haze_17278 Corylus avellana HOM05D000725 ORTHO05D004053 3.5e-37 159.1 161 46.6
Haze_17287 Corylus avellana HOM05D000725 ORTHO05D004053 3.5e-37 159.1 161 46.6
GSVIVG01032746001 Vitis vinifera HOM05D000725 ORTHO05D004053 1.0e-36 157.5 171 45.6
Manes.10G007800 Manihot esculenta HOM05D000725 ORTHO05D004053 1.7e-36 156.8 174 46.0
Gohir.D06G166900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 1.1e-35 154.1 159 48.4
Gorai.010G194700 Gossypium raimondii HOM05D000725 ORTHO05D004053 1.1e-35 154.1 159 48.4
TWI73G1060 Tripterygium wilfordii HOM05D000725 ORTHO05D004053 1.9e-35 153.3 187 40.1
Ciclev10030786m.g Citrus clementina HOM05D000725 ORTHO05D004053 2.5e-35 152.9 175 44.6
QL08p063892 Quercus lobata HOM05D000725 ORTHO05D004053 2.5e-35 152.9 161 44.7
vmacro06943 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 5.6e-35 151.8 158 46.2
HanXRQChr08g0221881 Helianthus annuus HOM05D000725 ORTHO05D004053 7.3e-35 151.4 159 46.5
Lj1A961T79 Lonicera japonica HOM05D000725 ORTHO05D004053 9.5e-35 151.0 156 46.8
CiPaw.01G301800 Carya illinoinensis HOM05D000725 ORTHO05D004053 1.2e-34 150.6 160 43.8
Lj8C62G8 Lonicera japonica HOM05D000725 ORTHO05D004053 1.2e-34 150.6 181 41.4
Ciclev10033966m.g Citrus clementina HOM05D000725 ORTHO05D004053 1.6e-34 150.2 157 48.4
PSO765G0016 Papaver somniferum HOM05D000725 ORTHO05D004053 2.8e-34 149.4 175 42.9
Actinidia00658 Actinidia chinensis HOM05D000725 ORTHO05D004053 3.6e-34 149.1 150 47.3
ECA233G5578 Erigeron canadensis HOM05D000725 ORTHO05D004053 6.2e-34 148.3 159 47.2
Aqoxy7G00421 Aquilegia oxysepala HOM05D000725 ORTHO05D004053 8.1e-34 147.9 181 43.1
Oeu023910.1 Olea europaea HOM05D000725 ORTHO05D004053 8.1e-34 147.9 157 45.2
Rhsim03G0147600 Rhododendron simsii HOM05D000725 ORTHO05D004053 1.4e-33 147.1 162 44.4
Duzib106G0872 Durio zibethinus HOM05D000725 ORTHO05D004053 1.8e-33 146.7 149 49.0
PSO349G0143 Papaver somniferum HOM05D000725 ORTHO05D004053 3.1e-33 146.0 168 44.0
Peaxi162Scf00284g00316 Petunia axillaris HOM05D000725 ORTHO05D004053 3.1e-33 146.0 156 44.2
Nitab4.5_0000058g0030 Nicotiana tabacum HOM05D000725 ORTHO05D004053 6.8e-33 144.8 161 42.9
Thecc.10G009700 Theobroma cacao HOM05D000725 ORTHO05D004053 6.8e-33 144.8 180 41.7
vmacro09999 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 6.8e-33 144.8 150 46.7
CANSAT56G0874 Cannabis sativa HOM05D000725 ORTHO05D004053 8.9e-33 144.4 156 45.5
Gohir.A06G160900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 8.9e-33 144.4 158 45.6
Actinidia29727 Actinidia chinensis HOM05D000725 ORTHO05D004053 1.2e-32 144.1 183 42.6
vmacro10000 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 1.2e-32 144.1 156 44.9
Duzib114G0648 Durio zibethinus HOM05D000725 ORTHO05D004053 1.5e-32 143.7 180 41.1
Cpa.g.sc19.122 Carica papaya HOM05D000725 ORTHO05D004053 2.6e-32 142.9 161 46.6
DCAR_011852 Daucus carota HOM05D000725 ORTHO05D004053 3.4e-32 142.5 162 43.2
COL.COLO4_25795 Corchorus olitorius HOM05D000725 ORTHO05D004053 4.4e-32 142.1 159 44.7
Sabra10G0141000 Salix brachista HOM05D000725 ORTHO05D004053 1.3e-31 140.6 165 41.8
Lsat_1_v5_gn_8_13121 Lactuca sativa HOM05D000725 ORTHO05D004053 1.7e-31 140.2 185 41.1
Nitab4.5_0001817g0060 Nicotiana tabacum HOM05D000725 ORTHO05D004053 1.7e-31 140.2 161 43.5
Potri.008G073500 Populus trichocarpa HOM05D000725 ORTHO05D004053 2.2e-31 139.8 167 41.3
CAN.G830.1 Capsicum annuum HOM05D000725 ORTHO05D004053 3.7e-31 139.0 156 42.9
Lsat_1_v5_gn_8_13481 Lactuca sativa HOM05D000725 ORTHO05D004053 3.7e-31 139.0 146 44.5
PGSC0003DMG400023950 Solanum tuberosum HOM05D000725 ORTHO05D004053 1.1e-30 137.5 180 38.3
Hma1.2p1_1013F.1_g247700 Hydrangea macrophylla HOM05D000725 ORTHO05D004053 1.4e-30 137.1 164 45.7
unitig_46.g18735 Utricularia gibba HOM05D000725 ORTHO05D004053 2.4e-30 136.3 158 44.3
Cc02_g05980 Coffea canephora HOM05D000725 ORTHO05D004053 3.2e-30 136.0 173 42.2
Ah.16g103940 Amaranthus hybridus HOM05D000725 ORTHO05D004053 4.1e-30 135.6 159 44.0
Rhsim09G0180400 Rhododendron simsii HOM05D000725 ORTHO05D004053 4.1e-30 135.6 159 42.1
Atru.chr12.108 Acer truncatum HOM05D000725 ORTHO05D004053 7.1e-30 134.8 124 49.2
Sopen06g016030 Solanum pennellii HOM05D000725 ORTHO05D004053 9.2e-30 134.4 156 40.4
MSTRG.8922 Avicennia marina HOM05D000725 ORTHO05D004053 1.6e-29 133.7 181 37.6
Prupe.2G256800 Prunus persica HOM05D000725 ORTHO05D004053 2.1e-29 133.3 170 40.6
ClCG07G004630 Citrullus lanatus HOM05D000725 ORTHO05D004053 3.5e-29 132.5 150 42.0
Sabra08G0054700 Salix brachista HOM05D000725 ORTHO05D004053 3.5e-29 132.5 167 40.7
Solyc06g050510.3 Solanum lycopersicum HOM05D000725 ORTHO05D004053 3.5e-29 132.5 156 39.7
Sed0016433 Sechium edule HOM05D000725 ORTHO05D004053 4.6e-29 132.1 174 36.8
MELO3C018395.2 Cucumis melo HOM05D000725 ORTHO05D004053 1.7e-28 130.2 150 42.0
RcHm_v2.0_Chr1g0371111 Rosa chinensis HOM05D000725 ORTHO05D004053 1.7e-28 130.2 182 39.0
EL10Ac2g04901 Beta vulgaris HOM05D000725 ORTHO05D004053 2.3e-28 129.8 158 39.9
FAN10G2086 Fragaria x ananassa HOM05D000725 ORTHO05D004053 2.3e-28 129.8 182 39.6
FAN03G2016 Fragaria x ananassa HOM05D000725 ORTHO05D004053 3.0e-28 129.4 182 39.6
Ca_05997_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 5.1e-28 128.6 150 43.3
Ca_05999_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 5.1e-28 128.6 150 43.3
AUR62012311 Chenopodium quinoa HOM05D000725 ORTHO05D004053 8.6e-28 127.9 183 37.7
Phvul.001G246400 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 8.6e-28 127.9 150 42.7
Migut.F00630 Erythranthe guttata HOM05D000725 ORTHO05D004053 1.5e-27 127.1 155 40.0
FvH4_7g25190 Fragaria vesca HOM05D000725 ORTHO05D004053 1.9e-27 126.7 181 39.2
Lalb_Chr10g0105301 Lupinus albus HOM05D000725 ORTHO05D004053 2.5e-27 126.3 181 39.2
AUR62022951 Chenopodium quinoa HOM05D000725 ORTHO05D004053 3.3e-27 125.9 183 37.7
LjContig00357g0008885 Lotus japonicus HOM05D000725 ORTHO05D004053 3.3e-27 125.9 145 40.7
Sc11g0005370 Simmondsia chinensis HOM05D000725 ORTHO05D004053 5.6e-27 125.2 157 40.1
Lalb_Chr17g0346921 Lupinus albus HOM05D000725 ORTHO05D004053 2.8e-26 122.9 182 37.4
SGA_v2.0_scaffold618G53215 Striga asiatica HOM05D000725 ORTHO05D004053 2.8e-26 122.9 152 41.4
Phvul.008G220500 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 4.7e-26 122.1 150 41.3
FAN06G2284 Fragaria x ananassa HOM05D000725 ORTHO05D004053 6.2e-26 121.7 181 38.1
CsaV3_5G010570 Cucumis sativus L. HOM05D000725 ORTHO05D004053 8.1e-26 121.3 150 40.0
PGR044G2605 Punica granatum HOM05D000725 ORTHO05D004053 1.1e-25 120.9 161 39.8
MBI04_g43202_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 1.4e-25 120.6 207 35.7
Hund13529 Selenicereus undatus HOM05D000725 ORTHO05D004053 1.4e-25 120.6 158 38.0
Glyma.U027200 Glycine max HOM05D000725 ORTHO05D004053 1.8e-25 120.2 150 40.0
THA.LOC104811007 Tarenaya hassleriana HOM05D000725 ORTHO05D004053 1.8e-25 120.2 161 39.8
Thhalv10012460m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 2.3e-25 119.8 157 36.9
Psat2g030640 Pisum sativum HOM05D000725 ORTHO05D004053 3.1e-25 119.4 149 41.6
Glyma.18G023900 Glycine max HOM05D000725 ORTHO05D004053 4.0e-25 119.0 171 37.4
AL5G20900 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 5.2e-25 118.6 168 41.1
A10p19550 Brassica napus HOM05D000725 ORTHO05D004053 5.2e-25 118.6 168 37.5
TPR.G8343 Trifolium pratense HOM05D000725 ORTHO05D004053 5.2e-25 118.6 151 39.7
Cc06_g20020 Coffea canephora HOM05D000725 ORTHO05D004053 6.8e-25 118.2 150 42.0
BcaB08g36500 Brassica carinata HOM05D000725 ORTHO05D004053 8.9e-25 117.9 168 36.9
BraA10t44031Z Brassica rapa HOM05D000725 ORTHO05D004053 1.2e-24 117.5 168 36.9
arahy.Tifrunner.gnm1.ann1.MF2MUZ Arachis hypogaea HOM05D000725 ORTHO05D004053 1.5e-24 117.1 149 39.6
arahy.Tifrunner.gnm1.ann1.Y9Z9L7 Arachis hypogaea HOM05D000725 ORTHO05D004053 1.5e-24 117.1 149 39.6
Lj6g0013892 Lotus japonicus HOM05D000725 ORTHO05D004053 1.5e-24 117.1 151 40.4
BcaC04g19431 Brassica carinata HOM05D000725 ORTHO05D004053 2.0e-24 116.7 168 36.9
Medtr3g071860 Medicago truncatula HOM05D000725 ORTHO05D004053 2.6e-24 116.3 161 37.9
VMungo0647G1332 Vigna mungo HOM05D000725 ORTHO05D004053 2.6e-24 116.3 145 40.0
BolC9t58445H Brassica oleracea HOM05D000725 ORTHO05D004053 3.4e-24 115.9 168 36.9
Carub.0006s1880 Capsella rubella HOM05D000725 ORTHO05D004053 3.4e-24 115.9 169 36.7
Sp6g24000 Schrenkiella parvula HOM05D000725 ORTHO05D004053 3.4e-24 115.9 169 36.7
SGA_v2.0_scaffold437G51620 Striga asiatica HOM05D000725 ORTHO05D004053 3.4e-24 115.9 158 39.2
AT3G42670 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 5.8e-24 115.2 157 40.8
Medtr5g083300 Medicago truncatula HOM05D000725 ORTHO05D004053 5.8e-24 115.2 151 39.7
Sp7g16860 Schrenkiella parvula HOM05D000725 ORTHO05D004053 5.8e-24 115.2 182 35.2
C09p55760 Brassica napus HOM05D000725 ORTHO05D004053 7.6e-24 114.8 168 36.3
CARHR153700 Cardamine hirsuta HOM05D000725 ORTHO05D004053 7.6e-24 114.8 157 38.9
BolC8t48449H Brassica oleracea HOM05D000725 ORTHO05D004053 1.3e-23 114.0 176 39.2
A08p12990 Brassica napus HOM05D000725 ORTHO05D004053 2.2e-23 113.2 180 38.3
Glyma.02G261800 Glycine max HOM05D000725 ORTHO05D004053 2.2e-23 113.2 188 36.2
SHI28808 Sapria himalayana HOM05D000725 ORTHO05D004053 6.4e-23 111.7 151 37.7
CARHR192380 Cardamine hirsuta HOM05D000725 ORTHO05D004053 8.4e-23 111.3 131 42.0
AT5G20420 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 1.1e-22 110.9 157 36.9
Thhalv10024231m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 1.1e-22 110.9 137 42.3
AL6G31990 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 3.2e-22 109.4 169 34.9
arahy.Tifrunner.gnm1.ann1.89IITC Arachis hypogaea HOM05D000725 ORTHO05D004053 3.2e-22 109.4 147 39.5
Carub.0008s1899 Capsella rubella HOM05D000725 ORTHO05D004053 4.1e-22 109.0 157 37.6
HPP92_003690 Vanilla planifolia HOM05D000725 ORTHO05D004053 4.1e-22 109.0 190 35.8
BraA08t33283Z Brassica rapa HOM05D000725 ORTHO05D004053 5.4e-22 108.6 180 37.8
Medtr7g026650 Medicago truncatula HOM05D000725 ORTHO05D004053 9.2e-22 107.8 148 39.2
arahy.Tifrunner.gnm1.ann1.M7CALB Arachis hypogaea HOM05D000725 ORTHO05D004053 1.6e-21 107.1 147 39.5
MBI04_g44603_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 2.1e-21 106.7 123 46.3
Psat5g144960 Pisum sativum HOM05D000725 ORTHO05D004053 1.0e-20 104.4 149 36.9
Eucgr.J00168 Eucalyptus grandis HOM05D000725 ORTHO05D004053 1.7e-20 103.6 154 38.3
Lj1g0026032 Lotus japonicus HOM05D000725 ORTHO05D004053 1.7e-20 103.6 167 37.1
Aa31LG1G14210 Aethionema arabicum HOM05D000725 ORTHO05D004053 1.2e-18 97.4 158 36.1
CARHR153740 Cardamine hirsuta HOM05D000725 ORTHO05D004053 4.7e-18 95.5 157 36.3
Lj6g0001238 Lotus japonicus HOM05D000725 ORTHO05D004053 6.2e-18 95.1 151 35.1
Medtr1g081750 Medicago truncatula HOM05D000725 ORTHO05D004053 2.4e-17 93.2 151 35.1
Os07g0692600 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D004053 3.4e-16 89.4 159 32.1
Lj4g0016792 Lotus japonicus HOM05D000725 ORTHO05D004053 2.2e-15 86.7 193 32.1
CSS0048207 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 1.9e-14 83.6 106 41.5
Potri.010G183766 Populus trichocarpa HOM05D000725 ORTHO05D004053 3.2e-14 82.8 95 43.2
Zm00001eb331510 Zea mays HOM05D000725 ORTHO05D004053 1.6e-13 80.5 155 29.7
Lj1g0014164 Lotus japonicus HOM05D000725 ORTHO05D004053 1.0e-12 77.8 114 34.2
TPR.G35061 Trifolium pratense HOM05D000725 ORTHO05D004053 1.7e-12 77.0 115 37.4
ATR0594G114 Amborella trichopoda HOM05D000725 ORTHO05D004053 5.1e-12 75.5 123 35.0
Carub.0005s0881 Capsella rubella HOM05D000725 ORTHO05D004053 8.7e-12 74.7 162 30.9
TPR.G30914 Trifolium pratense HOM05D026095 ORTHO05D004053 7.3e-11 71.6 129 36.4
CDE04G0926 Ceratophyllum demersum HOM05D000725 ORTHO05D004053 9.9e-08 61.2 123 31.7
TAR636G1138 Trochodendron aralioides HOM05D000725 ORTHO05D004053 1.1e-06 57.8 74 41.9


User provided reference genes

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