Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28581 Nelumbo nucifera HOM05D004044 ORTHO05D004841 8.1e-42 173.3 88 100.0
MSTRG.20492 Avicennia marina HOM05D004044 ORTHO05D004841 4.3e-11 71.2 73 58.9
MBI05_g02651_MAGBIO Magnolia biondii HOM05D004044 ORTHO05D004841 9.7e-11 70.1 57 70.2
Lj2g0017435 Lotus japonicus HOM05D004044 ORTHO05D004841 1.7e-10 69.3 48 81.2
Atru.chr13.1634 Acer truncatum HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Atru.chr3.4016 Acer truncatum HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Ah.08g220220 Amaranthus hybridus HOM05D000115 ORTHO05D000464 2.2e-10 68.9 55 69.1
arahy.Tifrunner.gnm1.ann1.3AM9HW Arachis hypogaea HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
arahy.Tifrunner.gnm1.ann1.4J3X95 Arachis hypogaea HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
CANSAT25G0006 Cannabis sativa HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
CANSAT25G0085 Cannabis sativa HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
CiPaw.14G064200 Carya illinoinensis HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
CDE02G2400 Ceratophyllum demersum HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Ca_04445_v3 Cicer arietinum L. HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Ca_18265_v3 Cicer arietinum L. HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Ciclev10029380m.g Citrus clementina HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Dinv17058 Davidia involucrata HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Duzib150G0800 Durio zibethinus HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
ECA247G2777 Erigeron canadensis HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
ECA248G0832 Erigeron canadensis HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Eucgr.J01999 Eucalyptus grandis HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
FvH4_6g26920 Fragaria vesca HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
FAN02G2699 Fragaria x ananassa HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
FAN05G0006 Fragaria x ananassa HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
FAN09G1115 Fragaria x ananassa HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
FAN09G4540 Fragaria x ananassa HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
FAN14G5530 Fragaria x ananassa HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Glyma.05G130300 Glycine max HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Glyma.08G085100 Glycine max HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Gohir.A08G001500 Gossypium hirsutum HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Gohir.D08G012200 Gossypium hirsutum HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Gorai.004G006200 Gossypium raimondii HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Gorai.009G096000 Gossypium raimondii HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
HanXRQChr09g0248471 Helianthus annuus HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
HanXRQChr09g0256561 Helianthus annuus HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Lsat_1_v5_gn_5_161301 Lactuca sativa HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Lj2g0015661 Lotus japonicus HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Nn1g09527 Nelumbo nucifera HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Phvul.002G193600 Phaseolus vulgaris HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Psat7g090040 Pisum sativum HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Prupe.4G244700 Prunus persica HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
PGR102G0470 Punica granatum HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
QL12p009539 Quercus lobata HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
RcHm_v2.0_Chr2g0128671 Rosa chinensis HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
Sabra16G0248500 Salix brachista HOM05D004044 ORTHO05D004841 2.2e-10 68.9 70 61.4
Thecc.09G313400 Theobroma cacao HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
TPR.G4935 Trifolium pratense HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
TAR369G0144 Trochodendron aralioides HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
TAR623G0707 Trochodendron aralioides HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
VMungo0647G0323 Vigna mungo HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
GSVIVG01024869001 Vitis vinifera HOM05D004044 ORTHO05D004841 2.2e-10 68.9 48 81.2
MD06G1239600 Malus domestica HOM05D004044 ORTHO05D004841 4.8e-10 67.8 48 79.2
Medtr4g096810 Medicago truncatula HOM05D004044 ORTHO05D004841 4.8e-10 67.8 48 79.2
Potri.001G377200 Populus trichocarpa HOM05D004044 ORTHO05D004841 4.8e-10 67.8 48 79.2
VMungo0251G1187 Vigna mungo HOM05D004044 ORTHO05D004841 4.8e-10 67.8 48 79.2
MSTRG.16970 Avicennia marina HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
CSS0028029 Camellia sinensis var. sinensis HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
CSS0043288 Camellia sinensis var. sinensis HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
ClCG01G008130 Citrullus lanatus HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
Cc01_g13450 Coffea canephora HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
MELO3C027194.2 Cucumis melo HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
CsaV3_5G020160 Cucumis sativus L. HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
DCAR_007422 Daucus carota HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
Gohir.D05G093400 Gossypium hirsutum HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
Hma1.2p1_0274F.1_g110460 Hydrangea macrophylla HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
Lalb_Chr03g0035651 Lupinus albus HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
Lalb_Chr19g0130021 Lupinus albus HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
Os05g0400700 Oryza sativa ssp. japonica HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
PSO541G5855 Papaver somniferum HOM05D004044 ORTHO05D004841 6.3e-10 67.4 51 74.5
PSO675G2284 Papaver somniferum HOM05D004044 ORTHO05D004841 6.3e-10 67.4 51 74.5
Sed0006109 Sechium edule HOM05D004044 ORTHO05D004841 6.3e-10 67.4 56 69.6
Sc12g0001200 Simmondsia chinensis HOM05D004044 ORTHO05D004841 6.3e-10 67.4 48 79.2
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 6.3e-10 67.4 48 79.2
EL10Ac7g16082 Beta vulgaris HOM05D004044 ORTHO05D004841 8.2e-10 67.0 48 79.2
COL.COLO4_18592 Corchorus olitorius HOM05D004044 ORTHO05D004841 8.2e-10 67.0 48 79.2
Manes.02G127300 Manihot esculenta HOM05D004044 ORTHO05D004841 8.2e-10 67.0 48 79.2
Rhsim01G0232900 Rhododendron simsii HOM05D004044 ORTHO05D004841 8.2e-10 67.0 48 77.1
Cfa017837 Carpinus fangiana HOM05D004044 ORTHO05D004841 1.1e-09 66.6 48 79.2
MD14G1245600 Malus domestica HOM05D004044 ORTHO05D004841 1.1e-09 66.6 48 79.2
Rhsim10G0155000 Rhododendron simsii HOM05D004044 ORTHO05D004841 1.1e-09 66.6 60 63.3
AUR62001726 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.4e-09 66.2 50 74.0
Lj1A145T59 Lonicera japonica HOM05D004044 ORTHO05D004841 1.4e-09 66.2 48 77.1
PSO675G0394 Papaver somniferum HOM05D004044 ORTHO05D004841 1.4e-09 66.2 48 77.1
PSO675G7761 Papaver somniferum HOM05D004044 ORTHO05D004841 1.4e-09 66.2 48 77.1
CAN.G141.22 Capsicum annuum HOM05D004044 ORTHO05D004841 1.8e-09 65.9 48 77.1
AUR62020050 Chenopodium quinoa HOM05D004044 ORTHO05D004841 1.8e-09 65.9 48 77.1
Nitab4.5_0000839g0100 Nicotiana tabacum HOM05D004044 ORTHO05D004841 1.8e-09 65.9 48 77.1
Nitab4.5_0005607g0010 Nicotiana tabacum HOM05D004044 ORTHO05D004841 1.8e-09 65.9 48 77.1
Peaxi162Scf00481g00055 Petunia axillaris HOM05D004044 ORTHO05D004841 1.8e-09 65.9 48 77.1
Prupe.5G243500 Prunus persica HOM05D004044 ORTHO05D004841 1.8e-09 65.9 48 79.2
Hund04913 Selenicereus undatus HOM05D004044 ORTHO05D004841 1.8e-09 65.9 48 77.1
Solyc06g005790.3 Solanum lycopersicum HOM05D004044 ORTHO05D004841 1.8e-09 65.9 48 77.1
Sopen06g001770 Solanum pennellii HOM05D004044 ORTHO05D004841 1.8e-09 65.9 48 77.1
PGSC0003DMG400020826 Solanum tuberosum HOM05D004044 ORTHO05D004841 1.8e-09 65.9 48 77.1
Zm00001eb287570 Zea mays HOM05D004044 ORTHO05D004841 1.8e-09 65.9 48 77.1
TWI75G1574 Tripterygium wilfordii HOM05D004044 ORTHO05D004841 2.4e-09 65.5 70 60.0
vmacro14563 Vaccinium macrocarpon HOM05D004044 ORTHO05D004841 2.4e-09 65.5 54 72.2
ATR0697G111 Amborella trichopoda HOM05D004044 ORTHO05D004841 3.1e-09 65.1 48 77.1
Migut.K00397 Erythranthe guttata HOM05D004044 ORTHO05D004841 3.1e-09 65.1 48 75.0
Actinidia23914 Actinidia chinensis HOM05D004044 ORTHO05D004841 4.1e-09 64.7 48 77.1
TWI31G1060 Tripterygium wilfordii HOM05D004044 ORTHO05D004841 4.1e-09 64.7 48 77.1
Sed0005531 Sechium edule HOM05D004044 ORTHO05D004841 5.3e-09 64.3 48 72.9
Hund18882 Selenicereus undatus HOM05D004044 ORTHO05D004841 5.3e-09 64.3 48 77.1
BcaC04g19817 Brassica carinata HOM05D004044 ORTHO05D004841 1.5e-08 62.8 45 77.8
Aa31LG1G11990 Aethionema arabicum HOM05D004044 ORTHO05D004841 2.0e-08 62.4 45 77.8
AL8G35510 Arabidopsis lyrata HOM05D004044 ORTHO05D004841 2.0e-08 62.4 45 77.8
BcaB05g22479 Brassica carinata HOM05D004044 ORTHO05D004841 2.0e-08 62.4 45 77.8
BcaB08g36284 Brassica carinata HOM05D004044 ORTHO05D004841 2.0e-08 62.4 45 77.8
BcaC03g14038 Brassica carinata HOM05D004044 ORTHO05D004841 2.0e-08 62.4 45 77.8
A02p07330 Brassica napus HOM05D000115 ORTHO05D004841 2.0e-08 62.4 45 77.8
A10p16340 Brassica napus HOM05D000115 ORTHO05D004841 2.0e-08 62.4 45 77.8
C02p12800 Brassica napus HOM05D004044 ORTHO05D004841 2.0e-08 62.4 45 77.8
BolC2t07375H Brassica oleracea HOM05D000115 ORTHO05D004841 2.0e-08 62.4 45 77.8
BraA02t05814Z Brassica rapa HOM05D004044 ORTHO05D004841 2.0e-08 62.4 45 77.8
BraA10t43718Z Brassica rapa HOM05D004044 ORTHO05D004841 2.0e-08 62.4 45 77.8
Carub.0008s1977 Capsella rubella HOM05D004044 ORTHO05D004841 2.0e-08 62.4 45 77.8
CARHR285370 Cardamine hirsuta HOM05D004044 ORTHO05D004841 2.0e-08 62.4 45 77.8
Sp6g20810 Schrenkiella parvula HOM05D004044 ORTHO05D004841 2.0e-08 62.4 45 77.8
Pp3c6_9100 Physcomitrium patens HOM05D004044 ORTHO05D004841 3.4e-08 61.6 48 72.9
THA.LOC104799424 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 3.4e-08 61.6 45 77.8
THA.LOC104810752 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 3.4e-08 61.6 45 77.8
Oeu017406.1 Olea europaea HOM05D004044 ORTHO05D004841 5.9e-08 60.8 48 72.9
Rhsim10G0155100 Rhododendron simsii HOM05D004044 ORTHO05D004841 5.9e-08 60.8 60 63.3
Cpa.g.sc81.63 Carica papaya HOM05D004044 ORTHO05D004841 7.7e-08 60.5 48 77.1
AT5G59180 Arabidopsis thaliana HOM05D004044 ORTHO05D004841 1.0e-07 60.1 45 75.6
C09p51390 Brassica napus HOM05D004044 ORTHO05D004841 1.0e-07 60.1 45 75.6
FvH4_2g24550 Fragaria vesca HOM05D004044 ORTHO05D004841 1.0e-07 60.1 48 68.8
unitig_0.g646 Utricularia gibba HOM05D004044 ORTHO05D004841 1.3e-07 59.7 54 61.1
Mapoly0121s0023 Marchantia polymorpha HOM05D004044 ORTHO05D004841 1.7e-07 59.3 48 70.8
SMO367G0145 Selaginella moellendorffii HOM05D004044 ORTHO05D004841 1.7e-07 59.3 48 70.8
SEGI_41420 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 1.7e-07 59.3 48 70.8
BolC9t57997H Brassica oleracea HOM05D004044 ORTHO05D004841 2.9e-07 58.5 45 73.3
AagrBONN_evm.TU.Sc2ySwM_344.2510 Anthoceros agrestis HOM05D004044 ORTHO05D004841 3.8e-07 58.2 48 68.8
FAN24G0219 Fragaria x ananassa HOM05D004044 ORTHO05D000111 3.8e-07 58.2 48 66.7
SEGI_08143 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 6.5e-07 57.4 48 68.8
BcaB01g04614 Brassica carinata HOM05D004044 ORTHO05D004841 8.5e-07 57.0 59 55.9
C03p13980 Brassica napus HOM05D004044 ORTHO05D004841 8.5e-07 57.0 59 55.9
BolC3t13845H Brassica oleracea HOM05D004044 ORTHO05D004841 8.5e-07 57.0 59 55.9
FAN27G1470 Fragaria x ananassa HOM05D004044 ORTHO05D000111 8.5e-07 57.0 37 81.1
COL.COLO4_35818 Corchorus olitorius HOM05D004044 ORTHO05D004841 1.9e-06 55.8 41 78.0
FAN15G0434 Fragaria x ananassa HOM05D004044 ORTHO05D004841 5.5e-06 54.3 48 64.6
Oeu004186.1 Olea europaea HOM05D004044 ORTHO05D004841 5.5e-06 54.3 40 77.5


User provided reference genes

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