Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 4.6e-228 795.0 711 100.0
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 1.2e-135 488.0 705 78.2
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.1e-123 448.4 721 72.8
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 2.6e-122 443.7 670 79.7
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 7.1e-120 435.6 673 76.8
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 2.1e-119 434.1 711 74.5
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.3e-116 424.9 649 79.5
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 1.3e-116 424.9 685 77.1
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 9.0e-115 418.7 620 79.4
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.2e-114 418.3 674 77.3
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 7.6e-114 415.6 674 77.3
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 4.2e-112 409.8 689 76.3
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 5.4e-112 409.5 668 75.9
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 5.4e-112 409.5 683 76.0
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.6e-111 407.9 666 74.8
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 6.0e-111 406.0 669 71.4
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.3e-110 404.8 654 74.5
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 8.7e-110 402.1 676 66.6
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 1.1e-109 401.7 697 72.6
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.9e-109 401.0 714 71.1
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.9e-109 401.0 716 71.4
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 3.3e-109 400.2 706 71.2
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 5.6e-109 399.4 717 71.8
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 9.6e-109 398.7 701 70.5
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 9.6e-109 398.7 710 71.8
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.3e-108 398.3 708 71.3
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.1e-107 395.2 312 64.7
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 3.1e-107 393.7 617 78.3
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 4.0e-107 393.3 710 71.5
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 9.0e-107 392.1 716 71.8
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 2.2e-105 387.5 675 74.8
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 2.2e-105 387.5 725 68.8
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 2.2e-105 387.5 687 73.7
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 2.9e-105 387.1 695 73.2
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 8.4e-105 385.6 724 70.0
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 3.2e-104 383.6 684 73.2
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 3.2e-104 383.6 616 77.6
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 4.6e-103 379.8 717 69.3
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.0e-102 378.6 593 78.2
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 1.1e-101 375.2 270 70.0
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 1.5e-101 374.8 553 83.4
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 2.5e-101 374.0 612 72.9
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 2.5e-101 374.0 713 67.5
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 5.6e-101 372.9 619 76.9
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 8.1e-100 369.0 709 63.6
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 4.0e-99 366.7 574 79.6
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 1.2e-98 365.2 618 76.9
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 2.6e-98 364.0 711 68.5
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.0e-97 362.1 712 68.7
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 4.9e-97 359.8 715 66.2
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 6.5e-97 359.4 620 75.5
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 1.1e-96 358.6 573 79.6
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 1.9e-96 357.8 700 66.1
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 4.2e-96 356.7 620 76.1
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 4.2e-96 356.7 649 72.1
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 1.6e-95 354.8 718 67.3
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 2.7e-95 354.0 621 73.4
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.3e-94 351.7 713 66.5
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 3.9e-94 350.1 328 56.7
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 1.1e-93 348.6 698 67.6
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 1.5e-93 348.2 696 68.4
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 3.3e-93 347.1 625 72.8
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 9.6e-93 345.5 622 73.5
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 3.7e-92 343.6 619 75.3
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 3.7e-92 343.6 693 62.6
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 6.3e-92 342.8 719 67.5
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 6.3e-92 342.8 714 67.9
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 1.2e-90 338.6 625 72.3
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 2.6e-90 337.4 620 71.9
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 2.6e-90 337.4 665 71.9
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 4.5e-90 336.7 618 74.1
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.0e-89 335.5 623 72.1
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 1.7e-89 334.7 704 65.8
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 2.2e-89 334.3 624 71.6
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.4e-88 331.6 368 49.5
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 1.4e-88 331.6 719 66.6
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 4.6e-87 326.6 722 67.6
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 4.6e-87 326.6 685 66.4
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 3.9e-86 323.6 692 67.2
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 1.5e-85 321.6 362 55.8
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 2.8e-84 317.4 619 65.9
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.1e-83 315.5 621 66.2
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.1e-83 315.5 618 65.9
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 1.1e-83 315.5 619 65.9
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.4e-83 315.1 617 65.8
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.4e-83 314.3 372 48.4
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 5.3e-83 313.2 276 56.9
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 6.9e-83 312.8 711 62.0
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 1.2e-82 312.0 673 67.3
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 3.2e-80 303.9 223 65.5
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 5.5e-80 303.1 271 57.2
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 4.4e-77 293.5 357 46.8
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 9.7e-77 292.4 616 70.9
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 4.8e-76 290.0 500 83.6
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 9.1e-75 285.8 360 48.1
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 5.0e-73 280.0 261 54.4
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 3.5e-58 230.7 208 51.4
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 3.2e-56 224.2 486 81.7
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 6.3e-52 209.9 505 75.8
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 3.8e-49 200.7 547 67.3
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 5.0e-49 200.3 156 60.9
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.1e-35 156.0 118 59.3
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 3.0e-33 147.9 99 70.7
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 2.6e-29 134.8 196 32.7
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 5.4e-27 127.1 175 42.3
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 9.2e-27 126.3 196 33.2
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 4.6e-26 124.0 76 81.6
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.0e-25 122.9 80 78.8
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 4.3e-24 117.5 77 75.3
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 6.8e-22 110.2 75 73.3
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.9e-19 102.1 66 80.3
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 1.1e-16 92.8 77 66.2
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 1.3e-09 69.3 184 26.6
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 1.7e-09 68.9 178 25.8
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 2.3e-09 68.6 58 63.8
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.3e-09 68.6 62 58.1
PSO063G7185 Papaver somniferum HOM05D003056 ORTHO05D003422 5.1e-09 67.4 192 26.0
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 6.6e-09 67.0 111 40.5
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 1.1e-08 66.2 165 27.9
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 2.5e-08 65.1 178 25.8
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 2.5e-08 65.1 179 25.1
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 2.5e-08 65.1 178 26.4
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 2.5e-08 65.1 203 26.1
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 3.3e-08 64.7 178 25.3
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 3.3e-08 64.7 178 25.8
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 7.3e-08 63.5 214 25.2
FAN12G3026 Fragaria x ananassa HOM05D003056 ORTHO05D003422 9.6e-08 63.2 178 25.8
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 9.6e-08 63.2 180 27.2
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 1.2e-07 62.8 243 25.1
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 1.6e-07 62.4 173 26.0
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 2.1e-07 62.0 178 24.2
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 2.8e-07 61.6 250 24.4
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 2.8e-07 61.6 163 24.5
Gohir.D12G193200 Gossypium hirsutum HOM05D000001 ORTHO05D000003 2.8e-07 61.6 183 24.6
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 2.8e-07 61.6 183 26.2
Solyc01g107320.3 Solanum lycopersicum HOM05D003056 ORTHO05D003422 2.8e-07 61.6 162 27.8
Sopen01g049560 Solanum pennellii HOM05D003056 ORTHO05D003422 2.8e-07 61.6 162 27.8
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 2.8e-07 61.6 200 24.5
Aa31LG3G7460 Aethionema arabicum HOM05D000001 ORTHO05D009862 3.6e-07 61.2 148 29.7
MD07G1078100 Malus domestica HOM05D000001 ORTHO05D009373 3.6e-07 61.2 124 30.6
Cfa004621 Carpinus fangiana HOM05D003056 ORTHO05D003422 4.7e-07 60.8 203 25.1
Gorai.009G004300 Gossypium raimondii HOM05D003056 ORTHO05D003422 4.7e-07 60.8 218 23.9
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 6.2e-07 60.5 160 25.0
CAN.G606.38 Capsicum annuum HOM05D003056 ORTHO05D003422 6.2e-07 60.5 144 29.2
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 6.2e-07 60.5 178 24.2
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 6.2e-07 60.5 152 26.3
Nn2g12946 Nelumbo nucifera HOM05D000001 ORTHO05D000003 6.2e-07 60.5 125 28.0
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 6.2e-07 60.5 214 24.8
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 8.1e-07 60.1 166 27.1
COL.COLO4_16640 Corchorus olitorius HOM05D000001 ORTHO05D000003 8.1e-07 60.1 149 26.2
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 8.1e-07 60.1 203 22.2
PGSC0003DMG400025851 Solanum tuberosum HOM05D003056 ORTHO05D003422 8.1e-07 60.1 136 29.4
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 1.1e-06 59.7 163 24.5
FvH4_6g19660 Fragaria vesca HOM05D000001 ORTHO05D035288 1.1e-06 59.7 103 32.0
FAN14G2534 Fragaria x ananassa HOM05D000001 ORTHO05D035288 1.1e-06 59.7 103 32.0
Gohir.A05G004100 Gossypium hirsutum HOM05D003056 ORTHO05D003422 1.1e-06 59.7 218 23.4
RcHm_v2.0_Chr3g0475001 Rosa chinensis HOM05D000001 ORTHO05D009373 1.1e-06 59.7 124 29.8
Migut.J01501 Erythranthe guttata HOM05D003056 ORTHO05D003422 1.4e-06 59.3 166 22.9
RcHm_v2.0_Chr1g0327321 Rosa chinensis HOM05D000001 ORTHO05D000003 1.4e-06 59.3 123 30.1
HPP92_024096 Vanilla planifolia HOM05D000001 ORTHO05D000003 1.4e-06 59.3 201 25.9
Gohir.D05G004500 Gossypium hirsutum HOM05D003056 ORTHO05D003422 1.8e-06 58.9 218 23.4
Gorai.008G208000 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.8e-06 58.9 183 24.0
Os05g0586900 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 1.8e-06 58.9 124 28.2
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 2.4e-06 58.5 163 24.5
Prupe.4G088400 Prunus persica HOM05D000001 ORTHO05D000003 2.4e-06 58.5 123 28.5
SGA_v2.0_scaffold5G02592 Striga asiatica HOM05D006749 ORTHO05D008352 2.4e-06 58.5 143 30.8
TWI14G1162 Tripterygium wilfordii HOM05D000001 ORTHO05D009862 3.1e-06 58.2 118 31.4
TAR628G1322 Trochodendron aralioides HOM05D000001 ORTHO05D011242 3.1e-06 58.2 95 33.7
Haze_10217 Corylus avellana HOM05D001121 ORTHO05D001256 4.0e-06 57.8 141 26.2
Lsat_1_v5_gn_2_115661 Lactuca sativa HOM05D000001 ORTHO05D000003 4.0e-06 57.8 123 28.5
Lsat_1_v5_gn_7_53500 Lactuca sativa HOM05D003056 ORTHO05D003422 4.0e-06 57.8 169 24.3
QL01p032090 Quercus lobata HOM05D000001 ORTHO05D000003 4.0e-06 57.8 122 29.5
unitig_37.g12934 Utricularia gibba HOM05D000001 ORTHO05D000003 4.0e-06 57.8 150 26.7
Atru.ctg752_3.82 Acer truncatum HOM05D002453 ORTHO05D008746 5.2e-06 57.4 137 27.0
Rhsim12G0158600 Rhododendron simsii HOM05D003056 ORTHO05D003422 5.2e-06 57.4 168 22.6
RcHm_v2.0_Chr6g0254201 Rosa chinensis HOM05D003056 ORTHO05D003422 5.2e-06 57.4 118 28.8
COL.COLO4_17527 Corchorus olitorius HOM05D000891 ORTHO05D008746 6.9e-06 57.0 132 33.3
MELO3C024569.2 Cucumis melo HOM05D000001 ORTHO05D009373 6.9e-06 57.0 124 30.6
Dinv36804 Davidia involucrata HOM05D002007 ORTHO05D000355 6.9e-06 57.0 123 25.2
CANSAT25G3461 Cannabis sativa HOM05D000001 ORTHO05D009729 9.0e-06 56.6 122 29.5
CDE05G2739 Ceratophyllum demersum HOM05D000001 ORTHO05D028695 9.0e-06 56.6 110 30.0
ECA240G0024 Erigeron canadensis HOM05D003056 ORTHO05D003422 9.0e-06 56.6 147 24.5
FAN05G3610 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.0e-06 56.6 126 27.8


User provided reference genes

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