Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.2e-147 526.6 274 100.0
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.4e-119 433.3 275 81.5
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 5.2e-119 431.4 275 81.1
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 8.8e-119 430.6 274 81.8
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 2.8e-117 425.6 273 80.6
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 4.8e-117 424.9 274 81.0
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 4.1e-116 421.8 270 80.7
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 4.1e-116 421.8 276 79.3
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 5.3e-116 421.4 277 80.9
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.6e-115 419.9 274 81.4
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 2.0e-115 419.5 275 80.7
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.5e-115 418.7 273 81.3
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.9e-115 417.9 261 82.8
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.3e-114 416.8 274 79.9
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 1.7e-114 416.4 275 79.6
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.2e-114 416.0 273 81.3
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 2.2e-114 416.0 277 79.1
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 3.8e-114 415.2 275 80.0
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 1.1e-113 413.7 278 79.1
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.5e-113 413.3 280 78.6
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 9.4e-113 410.6 275 78.5
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.2e-112 410.2 279 77.4
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 2.1e-112 409.5 275 77.5
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 2.7e-112 409.1 273 79.9
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 2.7e-112 409.1 276 78.6
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 4.7e-112 408.3 272 76.5
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 8.0e-112 407.5 274 77.4
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.0e-111 407.1 279 77.1
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.0e-111 407.1 279 77.1
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.0e-111 407.1 281 77.9
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 2.3e-111 406.0 275 77.8
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 3.0e-111 405.6 277 79.4
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 5.2e-111 404.8 277 77.3
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 5.2e-111 404.8 278 78.4
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 8.8e-111 404.1 282 77.7
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.2e-110 403.7 276 77.9
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 2.0e-110 402.9 279 76.7
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 2.0e-110 402.9 282 77.7
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 3.3e-110 402.1 284 76.8
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 5.7e-110 401.4 276 77.2
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.2e-109 399.4 276 77.2
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 2.2e-109 399.4 279 77.4
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 2.2e-109 399.4 273 78.4
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 2.8e-109 399.1 275 78.2
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 2.8e-109 399.1 282 77.0
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 4.8e-109 398.3 274 76.3
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 6.3e-109 397.9 275 78.9
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.3e-109 397.9 276 76.4
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 8.2e-109 397.5 277 77.3
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 8.2e-109 397.5 277 77.3
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.1e-108 397.1 276 77.9
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.4e-108 396.7 276 76.4
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 3.1e-108 395.6 274 77.7
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 7.0e-108 394.4 276 76.4
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 7.0e-108 394.4 274 76.3
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 9.1e-108 394.0 276 77.2
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.7e-107 392.5 276 76.4
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.7e-107 392.5 281 76.2
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 3.5e-107 392.1 276 75.7
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 3.5e-107 392.1 272 75.7
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 5.9e-107 391.3 277 76.2
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.3e-106 390.2 274 77.4
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 2.2e-106 389.4 273 75.1
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 2.9e-106 389.0 276 76.8
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 3.8e-106 388.7 276 75.4
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 3.8e-106 388.7 281 74.4
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 8.5e-106 387.5 275 76.0
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 8.5e-106 387.5 274 75.2
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 8.5e-106 387.5 274 75.2
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.1e-105 387.1 273 76.2
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 2.5e-105 386.0 274 74.8
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.5e-105 386.0 274 76.6
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 2.5e-105 386.0 273 75.1
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 2.5e-105 386.0 272 76.8
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 3.2e-105 385.6 277 74.7
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 5.5e-105 384.8 276 75.0
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 5.5e-105 384.8 281 76.9
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 5.5e-105 384.8 274 74.5
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 7.2e-105 384.4 274 76.3
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 7.2e-105 384.4 274 74.5
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 7.2e-105 384.4 274 74.5
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 7.2e-105 384.4 274 74.5
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 7.2e-105 384.4 274 74.5
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 9.4e-105 384.0 274 74.8
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 2.7e-104 382.5 274 74.1
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 4.7e-104 381.7 276 73.6
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 6.1e-104 381.3 275 74.5
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 8.0e-104 380.9 281 76.5
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 8.0e-104 380.9 273 75.1
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-103 380.2 274 73.7
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 1.8e-103 379.8 274 73.7
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 1.8e-103 379.8 262 76.7
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 2.3e-103 379.4 248 80.2
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 2.3e-103 379.4 271 74.5
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 3.0e-103 379.0 276 74.3
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 8.8e-103 377.5 275 75.6
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 1.5e-102 376.7 274 73.4
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 1.5e-102 376.7 274 73.4
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 2.6e-102 375.9 270 73.7
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 2.6e-102 375.9 275 73.8
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 3.4e-102 375.6 274 73.4
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 9.8e-102 374.0 274 72.3
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 9.8e-102 374.0 274 72.3
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.3e-101 373.6 278 71.6
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 2.2e-101 372.9 274 73.0
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 2.8e-101 372.5 275 76.0
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 3.7e-101 372.1 277 74.0
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 4.8e-101 371.7 274 71.9
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 4.8e-101 371.7 280 72.1
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 4.8e-101 371.7 278 75.5
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.4e-100 369.4 278 74.5
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 4.1e-100 368.6 245 80.4
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 8.6e-98 360.9 198 89.9
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 1.9e-97 359.8 278 73.4
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 3.2e-97 359.0 234 79.9
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 2.8e-96 355.9 240 78.3
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 4.5e-91 338.6 193 86.5
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 4.9e-85 318.5 233 71.7
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.1e-84 317.4 287 63.4
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 2.7e-83 312.8 196 79.1
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.0e-82 310.8 239 72.0
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 8.0e-80 301.2 169 88.8
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 8.9e-79 297.7 273 57.9
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 2.3e-71 273.1 193 76.2
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 2.0e-70 270.0 197 76.1
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 4.1e-68 262.3 162 82.7
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 9.5e-65 251.1 199 69.3
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 8.1e-64 248.1 134 92.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.4e-60 237.3 161 72.0
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.4e-55 220.7 165 67.3
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 3.2e-52 209.5 273 50.2
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 8.4e-45 184.9 124 75.0
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 4.2e-44 182.6 154 70.1
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.6e-40 170.6 231 49.4
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 2.8e-40 169.9 96 84.4
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.3e-36 154.8 230 43.9
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.3e-36 154.8 230 43.9
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 4.5e-22 109.4 111 58.6
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.9e-20 104.0 81 72.8
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.7e-11 73.6 179 31.3
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 1.8e-10 70.9 175 30.9
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.9e-10 69.7 38 84.2
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.2e-08 63.9 82 50.0
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 6.9e-07 58.9 60 48.3


User provided reference genes

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