Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.5e-275 951.0 492 100.0
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 5.4e-228 794.3 494 85.4
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.9e-201 706.1 503 77.1
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 1.6e-187 659.8 509 72.3
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 1.4e-186 656.8 503 72.4
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.9e-178 628.6 503 68.2
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 7.4e-177 624.4 500 68.0
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.3e-176 623.6 490 68.8
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.0e-173 614.0 492 68.9
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 6.1e-171 604.7 506 66.2
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 2.0e-169 599.7 513 65.5
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.1e-164 583.9 504 66.1
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.7e-163 578.6 491 67.0
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 6.1e-163 578.2 483 67.1
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 6.8e-162 574.7 481 66.5
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 1.5e-161 573.5 501 64.3
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 2.0e-161 573.2 499 64.5
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.4e-161 572.4 494 66.2
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 9.8e-161 570.9 500 62.6
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 9.8e-161 570.9 396 75.0
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.7e-160 570.1 498 61.2
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 8.3e-160 567.8 484 67.1
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 1.8e-159 566.6 511 61.6
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 5.4e-159 565.1 502 64.1
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 5.4e-159 565.1 509 63.5
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 5.4e-159 565.1 504 63.5
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 5.9e-158 561.6 494 64.0
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 2.9e-157 559.3 473 66.8
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 6.6e-157 558.1 467 66.4
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.5e-156 557.0 506 62.6
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 1.5e-156 557.0 475 65.7
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 1.5e-156 557.0 483 66.3
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 1.9e-156 556.6 419 71.4
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.9e-156 556.6 467 66.2
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 2.5e-156 556.2 499 62.5
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.2e-155 553.9 450 68.2
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 1.2e-155 553.9 503 63.0
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 2.1e-155 553.1 481 63.6
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 4.7e-155 552.0 474 65.8
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 6.1e-155 551.6 480 65.6
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 8.0e-155 551.2 499 62.7
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.5e-153 547.0 466 64.2
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 2.0e-153 546.6 490 64.1
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.3e-152 543.9 471 65.6
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 1.7e-152 543.5 474 65.2
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 3.7e-152 542.3 471 65.4
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 3.7e-152 542.3 459 65.4
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 8.3e-152 541.2 508 61.0
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.4e-151 539.7 481 62.2
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 9.2e-151 537.7 501 61.1
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 9.2e-151 537.7 473 64.1
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 1.6e-150 537.0 508 61.6
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 2.7e-150 536.2 497 61.6
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.7e-150 536.2 500 60.8
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 3.5e-150 535.8 496 62.5
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 4.5e-150 535.4 512 61.1
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 4.5e-150 535.4 504 61.7
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 5.9e-150 535.0 490 62.2
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 1.3e-149 533.9 474 64.1
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 1.3e-149 533.9 504 60.5
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.7e-149 533.5 380 75.0
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 5.0e-149 531.9 480 61.7
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 8.6e-149 531.2 431 66.8
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.1e-148 530.8 462 63.4
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.5e-148 529.6 445 66.7
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 2.5e-148 529.6 463 65.9
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 4.3e-148 528.9 493 61.9
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 1.6e-147 526.9 425 67.5
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.6e-147 526.9 486 61.1
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 3.6e-147 525.8 507 60.7
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 6.1e-147 525.0 480 62.1
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 8.0e-147 524.6 382 72.5
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.8e-146 523.5 475 62.7
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 5.2e-146 521.9 502 60.4
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.2e-145 520.8 516 59.1
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 2.0e-145 520.0 503 59.4
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 3.4e-145 519.2 448 64.3
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 7.5e-145 518.1 446 64.6
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 9.8e-145 517.7 490 58.8
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.7e-144 516.9 415 67.2
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 2.2e-144 516.5 477 61.0
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 8.3e-144 514.6 416 66.6
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 3.2e-143 512.7 439 64.7
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 7.0e-143 511.5 486 61.3
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 7.0e-143 511.5 447 63.8
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 2.0e-142 510.0 483 61.5
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.6e-142 508.8 471 62.0
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.1e-140 504.2 487 59.8
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.1e-140 504.2 489 59.1
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 5.6e-140 501.9 488 59.4
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 9.5e-140 501.1 478 61.1
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 9.5e-140 501.1 473 60.5
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.2e-139 500.7 484 58.5
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 1.6e-139 500.4 486 60.3
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.8e-138 496.9 384 68.5
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.1e-138 496.1 512 58.6
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 4.0e-138 495.7 477 61.2
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 1.2e-137 494.2 400 65.5
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.4e-137 492.3 392 68.4
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 5.8e-137 491.9 482 58.5
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 7.5e-137 491.5 393 67.2
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.9e-136 489.6 479 57.8
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 4.9e-136 488.8 472 60.2
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 4.1e-135 485.7 496 57.1
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 2.7e-134 483.0 505 58.4
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.6e-134 482.3 481 58.0
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 2.3e-133 479.9 479 57.0
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 2.3e-133 479.9 396 63.6
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 3.0e-133 479.6 505 57.6
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 3.9e-133 479.2 495 57.2
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.1e-132 477.6 473 58.4
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.1e-132 477.6 455 59.1
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.1e-132 477.6 482 57.9
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.5e-132 477.2 473 58.1
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 1.9e-132 476.9 472 57.6
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 3.3e-132 476.1 470 57.7
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 4.3e-132 475.7 479 56.2
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 6.8e-130 468.4 481 56.1
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.2e-129 467.6 490 56.7
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 4.4e-129 465.7 456 58.3
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 1.4e-127 460.7 447 57.5
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.4e-127 460.7 472 55.7
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 1.9e-127 460.3 472 58.1
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 2.4e-127 459.9 475 55.2
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 3.2e-127 459.5 475 55.2
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 2.1e-126 456.8 483 56.5
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 1.3e-125 454.1 499 53.5
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.3e-125 453.4 316 74.4
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 6.6e-125 451.8 480 55.2
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 1.5e-124 450.7 469 55.9
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 1.5e-124 450.7 458 55.7
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 2.5e-124 449.9 479 54.3
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 9.5e-124 448.0 502 52.8
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-123 447.6 476 55.5
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.8e-123 446.4 481 54.9
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 1.8e-122 443.7 478 54.2
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 3.1e-122 443.0 506 53.4
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 2.0e-121 440.3 448 57.8
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.6e-121 439.9 459 55.3
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.8e-121 438.7 468 54.5
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.7e-120 437.2 465 54.2
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 7.1e-119 431.8 453 55.6
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 2.5e-116 423.3 469 53.3
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 3.6e-115 419.5 383 58.7
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.9e-111 407.1 427 54.3
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.8e-107 392.5 278 68.7
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.4e-106 391.0 352 60.2
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 3.9e-101 372.9 469 51.0
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 5.6e-100 369.0 378 50.5
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 1.0e-93 348.2 451 45.0
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 1.0e-88 331.6 270 66.7
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 9.1e-74 282.0 360 46.9
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 3.4e-73 280.0 192 76.6
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.1e-63 248.4 606 33.3
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 4.5e-57 226.5 195 65.6
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.0e-44 184.5 147 63.3
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.4e-44 183.7 137 73.0
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 9.8e-44 182.2 276 43.5
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 4.1e-42 176.8 145 70.3
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-41 175.3 324 40.1
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.7e-40 171.4 129 72.1
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 5.0e-40 169.9 129 72.9
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 8.9e-37 159.1 117 64.1
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 9.2e-34 149.1 340 35.9
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 1.1e-31 142.1 98 70.4
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 7.0e-26 122.9 315 34.3
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 9.2e-26 122.5 135 49.6
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 9.2e-26 122.5 135 49.6
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 6.0e-25 119.8 99 60.6
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 2.6e-20 104.4 333 27.9
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 4.0e-13 80.5 69 47.8
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 6.8e-13 79.7 308 30.2
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 1.9e-10 71.6 109 48.6
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.6e-09 68.6 47 63.8
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 6.0e-09 66.6 52 67.3


User provided reference genes

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