Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 3.2e-148 528.9 371 100.0
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.3e-117 427.2 372 84.1
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 2.5e-108 396.4 372 82.5
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 8.0e-107 391.3 373 81.0
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 1.3e-104 384.0 373 79.4
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.1e-103 379.4 374 78.9
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 5.6e-100 368.6 375 76.8
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 5.6e-100 368.6 374 79.1
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 9.5e-100 367.9 374 76.2
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.1e-99 366.7 374 78.9
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 2.1e-99 366.7 374 79.9
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 6.1e-99 365.2 374 77.5
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 8.0e-99 364.8 372 78.2
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 1.8e-98 363.6 374 78.3
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 3.0e-98 362.8 374 63.6
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 8.9e-98 361.3 401 62.8
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 4.4e-97 359.0 375 63.7
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 5.7e-97 358.6 371 76.3
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 9.8e-97 357.8 378 76.5
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 9.8e-97 357.8 378 76.5
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 3.7e-96 355.9 372 76.9
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.4e-95 354.0 374 77.0
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 2.4e-95 353.2 374 78.1
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 2.4e-95 353.2 377 77.7
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 3.2e-95 352.8 375 66.1
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 3.2e-95 352.8 373 74.5
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 9.2e-95 351.3 375 75.5
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.2e-94 350.9 372 64.0
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 2.7e-94 349.7 362 68.2
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 4.6e-94 349.0 366 79.2
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.3e-93 347.4 362 77.3
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.3e-93 347.4 376 75.0
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 1.7e-93 347.1 373 76.1
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.7e-93 347.1 375 76.3
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.7e-93 347.1 383 75.5
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 2.3e-93 346.7 382 78.8
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 5.0e-93 345.5 376 74.7
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 6.6e-93 345.1 375 75.2
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 8.6e-93 344.7 376 73.9
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 1.1e-92 344.4 372 76.3
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 4.3e-92 342.4 373 75.6
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 1.2e-91 340.9 359 76.6
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 6.2e-91 338.6 372 75.5
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.0e-90 337.8 373 73.5
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 1.4e-90 337.4 373 73.5
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 1.4e-90 337.4 376 75.3
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.1e-90 336.3 369 75.1
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 5.2e-90 335.5 378 72.2
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 6.8e-90 335.1 369 73.7
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 1.2e-89 334.3 371 73.3
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 3.4e-89 332.8 375 72.3
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 1.7e-88 330.5 373 75.1
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 3.7e-88 329.3 376 73.7
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 6.4e-88 328.6 376 73.7
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 6.4e-88 328.6 367 70.8
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 6.4e-88 328.6 367 74.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 1.1e-87 327.8 381 74.3
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 1.4e-87 327.4 369 72.9
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.9e-87 327.0 396 63.1
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.9e-87 327.0 375 70.1
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 4.1e-87 325.9 376 73.7
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 3.5e-86 322.8 373 71.8
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 6.0e-86 322.0 371 72.5
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.5e-84 316.6 333 75.7
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 9.5e-84 314.7 385 68.3
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.6e-83 313.9 367 73.6
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 1.8e-82 310.5 380 67.6
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 8.9e-82 308.1 343 70.6
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 2.6e-81 306.6 330 78.2
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.3e-80 304.3 377 70.0
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 2.9e-80 303.1 377 72.4
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 7.1e-79 298.5 347 77.5
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 7.8e-78 295.0 347 76.7
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.4e-74 284.3 327 67.3
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 6.8e-74 282.0 390 67.4
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.2e-73 281.2 377 69.2
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 4.9e-72 275.8 325 76.9
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 8.4e-72 275.0 378 68.3
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.9e-71 273.9 355 69.6
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 3.2e-71 273.1 390 66.9
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 9.2e-71 271.6 482 38.0
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 2.1e-70 270.4 380 67.1
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 2.1e-70 270.4 360 67.8
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 3.5e-70 269.6 380 66.6
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 3.0e-69 266.5 381 66.7
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 3.0e-69 266.5 356 68.0
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.1e-68 264.6 370 64.3
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 8.1e-67 258.5 382 62.0
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 8.1e-67 258.5 393 66.2
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.1e-66 258.1 382 62.0
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.1e-66 258.1 382 62.0
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 1.4e-66 257.7 371 63.9
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 3.1e-66 256.5 388 62.1
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 4.0e-66 256.1 373 62.7
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 9.9e-65 251.5 368 67.7
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.2e-64 250.4 278 76.6
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 2.9e-64 250.0 383 51.7
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 8.4e-64 248.4 382 52.6
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.4e-63 247.7 335 69.0
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 1.9e-63 247.3 370 62.4
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 3.2e-63 246.5 380 44.7
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.9e-60 237.3 381 63.0
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.9e-60 237.3 360 63.6
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 3.3e-60 236.5 381 59.8
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 4.8e-59 232.6 369 60.2
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 2.4e-58 230.3 319 68.0
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 1.5e-57 227.6 319 69.9
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 8.4e-56 221.9 309 68.3
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 2.4e-55 220.3 334 69.5
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 7.9e-54 215.3 267 73.0
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 1.6e-51 207.6 176 66.5
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 6.9e-50 202.2 376 55.9
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 2.2e-48 197.2 167 63.5
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 3.5e-46 189.9 357 58.5
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 3.0e-45 186.8 366 58.2
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 9.6e-44 181.8 181 57.5
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 2.1e-43 180.6 356 55.6
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.1e-42 178.3 132 86.4
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.8e-40 169.9 132 77.3
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 1.1e-39 168.3 313 58.5
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.7e-38 163.7 132 75.8
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 4.6e-38 162.9 167 56.9
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 6.0e-38 162.5 292 60.3
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 3.3e-36 156.8 301 59.5
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 3.0e-29 133.7 357 51.8
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 9.1e-26 122.1 133 61.7
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 9.1e-26 122.1 110 70.0
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 7.7e-25 119.0 102 64.7
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 7.7e-25 119.0 241 62.7
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 7.7e-25 119.0 254 60.2
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 7.7e-25 119.0 155 45.2
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 3.7e-19 100.1 417 45.8
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 4.8e-19 99.8 233 55.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.2e-14 85.1 105 56.2
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 7.9e-14 82.4 56 89.3
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 3.9e-13 80.1 56 87.5
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 4.8e-11 73.2 84 69.0


User provided reference genes

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