Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 0.0e+00 1139.4 653 100.0
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 5.4e-215 751.5 654 72.9
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.9e-205 719.2 654 70.3
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 4.7e-195 685.3 653 60.3
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.8e-187 659.4 635 59.1
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.3e-184 650.6 655 58.5
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.9e-183 646.7 621 68.0
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 3.5e-182 642.5 635 58.6
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.1e-178 630.9 652 63.5
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 3.4e-177 625.9 650 61.8
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.2e-176 623.2 656 63.7
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.8e-171 606.3 652 61.3
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 8.1e-171 604.7 658 61.1
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.4e-170 603.2 658 60.6
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 3.1e-170 602.8 653 60.3
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.5e-169 600.5 653 59.1
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.2e-168 596.7 652 61.5
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.9e-168 595.5 651 61.9
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.4e-167 592.0 651 61.8
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.6e-166 590.5 661 57.6
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.7e-166 589.7 651 61.8
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 3.5e-166 589.3 633 64.0
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.7e-165 587.0 651 61.4
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.6e-164 582.0 651 61.3
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.6e-163 580.5 651 61.0
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 1.1e-159 567.8 652 59.0
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.4e-159 567.4 656 57.6
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 2.1e-158 563.5 658 57.8
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 4.6e-158 562.4 661 54.8
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.3e-157 560.1 655 59.2
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 5.1e-157 558.9 658 57.1
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 8.7e-157 558.1 725 45.9
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.1e-156 557.8 653 60.0
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 2.5e-156 556.6 652 56.1
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 1.6e-155 553.9 642 59.5
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 4.0e-154 549.3 658 53.6
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 9.0e-154 548.1 656 55.8
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.5e-153 547.4 648 57.7
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 2.0e-153 547.0 652 58.3
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.4e-151 540.8 658 57.9
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.4e-151 540.8 648 58.8
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 9.3e-151 538.1 707 48.8
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.2e-150 537.7 647 57.8
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 1.6e-150 537.3 630 57.1
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.7e-150 536.6 648 56.5
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 4.6e-150 535.8 648 56.5
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.3e-149 534.3 658 54.1
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.8e-149 533.9 649 57.3
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 3.0e-149 533.1 652 56.3
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 3.9e-149 532.7 653 58.0
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 8.7e-149 531.6 649 57.9
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.1e-148 531.2 648 54.8
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 2.5e-148 530.0 651 57.5
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 4.3e-148 529.3 648 57.7
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 2.1e-147 526.9 648 57.3
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.1e-146 524.6 651 57.9
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.8e-146 523.9 681 52.4
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.9e-146 521.9 645 55.0
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.0e-145 520.4 681 55.8
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 5.8e-145 518.8 653 56.7
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.7e-144 517.3 649 58.1
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 2.2e-144 516.9 643 56.3
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 4.9e-144 515.8 644 57.3
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 8.4e-144 515.0 648 57.4
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.5e-143 513.5 669 53.4
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 7.4e-140 501.9 657 56.8
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.3e-139 501.1 631 57.1
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 2.8e-139 500.0 641 56.0
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 6.3e-139 498.8 651 53.9
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.8e-138 497.3 656 54.6
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 4.1e-138 496.1 648 56.9
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 5.3e-138 495.7 639 56.8
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 6.9e-138 495.4 700 50.4
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.6e-137 493.4 642 55.6
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 3.4e-137 493.0 659 54.2
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.3e-136 491.1 637 56.4
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.2e-136 490.3 646 54.2
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.2e-136 490.3 638 55.5
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 8.5e-136 488.4 647 53.8
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.4e-135 487.6 636 54.9
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.5e-135 486.9 643 54.9
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 2.5e-135 486.9 643 55.8
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 2.5e-135 486.9 655 56.6
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.2e-134 484.6 643 55.7
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-134 484.6 637 56.5
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.6e-134 484.2 638 56.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 3.6e-134 483.0 643 55.4
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 7.9e-134 481.9 643 55.1
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 7.9e-134 481.9 647 53.5
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 7.9e-134 481.9 682 51.5
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.4e-133 481.1 643 54.6
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.4e-133 481.1 660 55.6
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 2.3e-133 480.3 641 52.3
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.5e-129 467.6 645 51.8
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.7e-128 464.2 645 48.5
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.8e-128 463.0 641 45.1
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.4e-127 461.1 632 56.0
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-122 444.9 577 53.6
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.4e-122 443.7 643 53.0
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 7.0e-122 442.2 655 51.6
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.5e-121 439.5 637 50.7
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.7e-120 437.6 631 43.9
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.2e-120 437.2 587 44.5
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.2e-119 432.2 642 45.5
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 8.0e-118 428.7 641 44.0
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 4.4e-116 422.9 488 60.0
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 4.4e-116 422.9 523 55.1
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 9.7e-116 421.8 650 43.8
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-115 421.0 519 55.7
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.4e-114 417.2 473 54.5
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 3.6e-110 403.3 638 42.5
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.0e-109 401.7 477 47.0
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 2.0e-108 397.5 666 47.9
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 5.3e-106 389.4 521 54.1
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 5.0e-104 382.9 651 41.0
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.0e-93 348.6 649 37.0
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 5.0e-80 303.1 459 45.5
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 6.6e-80 302.8 476 46.0
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 8.3e-75 285.8 459 40.3
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 4.1e-74 283.5 643 44.2
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-73 281.2 481 38.0
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 1.7e-72 278.1 418 51.4
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-71 274.6 475 39.8
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 1.8e-69 268.1 354 44.6
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.2e-68 265.4 257 74.7
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 2.6e-68 264.2 262 62.6
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 2.3e-64 251.1 276 64.1
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.1e-49 201.4 354 37.0
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 8.7e-48 196.1 708 29.8
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.8e-45 188.3 123 73.2
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 1.5e-44 185.3 558 28.1
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.0e-44 184.9 587 31.0
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 9.3e-42 176.0 191 53.4
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 3.9e-40 170.6 122 67.2
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.0e-37 160.6 121 62.8
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 3.5e-33 147.5 132 58.3
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 5.1e-32 143.7 237 47.7
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 6.7e-32 143.3 136 68.4
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 5.7e-31 140.2 121 59.5
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 1.6e-30 138.7 135 54.8
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.1e-30 138.3 201 54.2
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.9e-26 125.2 122 50.0
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.2e-26 124.4 135 66.7
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 2.7e-25 121.3 109 58.7
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.0e-24 119.4 106 54.7
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.8e-21 108.6 345 28.4
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-20 105.5 98 60.2
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.5e-20 105.5 136 60.3
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.2e-18 97.8 93 57.0
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 4.6e-17 94.0 149 38.9
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 3.0e-16 91.3 71 60.6
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 5.7e-15 87.0 282 27.7
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 5.7e-15 87.0 52 69.2
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 1.4e-13 82.4 76 56.6
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.4e-13 82.4 58 74.1
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 2.0e-12 78.6 122 38.5
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 2.6e-12 78.2 75 58.7
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.6e-12 78.2 259 27.0
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.8e-11 74.3 61 63.9
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.8e-11 74.3 61 65.6
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.0e-11 73.9 61 63.9
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.0e-11 73.9 61 63.9
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 6.5e-11 73.6 127 33.9
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.2e-10 70.9 61 60.7
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.4e-10 69.7 61 60.7
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.2e-09 69.3 68 54.4
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 1.6e-09 68.9 86 46.5
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.6e-07 61.6 114 35.1
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 2.6e-07 61.6 74 45.9
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 7.4e-07 60.1 30 83.3


User provided reference genes

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