Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27122 Nelumbo nucifera HOM05D006162 ORTHO05D007627 3.4e-115 418.3 205 100.0
Nn5g27123 Nelumbo nucifera HOM05D006162 ORTHO05D007627 3.4e-115 418.3 205 100.0
TAR625G0476 Trochodendron aralioides HOM05D006162 ORTHO05D007627 5.7e-54 214.9 208 55.3
Dinv05774 Davidia involucrata HOM05D006162 ORTHO05D007627 6.7e-47 191.4 203 53.7
Aqoxy6G00404 Aquilegia oxysepala HOM05D006162 ORTHO05D007627 1.5e-38 163.7 201 47.3
CSS0015273 Camellia sinensis var. sinensis HOM05D006162 ORTHO05D007627 2.8e-37 159.5 201 46.8
Atru.chr4.715 Acer truncatum HOM05D006162 ORTHO05D007627 4.5e-35 152.1 204 42.6
Cfa002788 Carpinus fangiana HOM05D006162 ORTHO05D007627 5.5e-33 145.2 203 43.8
GSVIVG01022265001 Vitis vinifera HOM05D006162 ORTHO05D007627 1.2e-32 144.1 202 43.6
Duzib187G0444 Durio zibethinus HOM05D006162 ORTHO05D007627 2.1e-32 143.3 201 42.8
MBI17_g27203_MAGBIO Magnolia biondii HOM05D006162 ORTHO05D007627 2.1e-32 143.3 213 43.2
Gohir.A13G151700 Gossypium hirsutum HOM05D006162 ORTHO05D007627 3.6e-32 142.5 210 42.9
Gohir.D13G156100 Gossypium hirsutum HOM05D006162 ORTHO05D007627 4.7e-32 142.1 210 42.9
Ciclev10025253m.g Citrus clementina HOM05D006162 ORTHO05D007627 1.0e-31 141.0 209 40.2
QL06p031367 Quercus lobata HOM05D006162 ORTHO05D007627 1.0e-31 141.0 201 44.8
Gorai.013G176700 Gossypium raimondii HOM05D006162 ORTHO05D007627 3.0e-31 139.4 210 42.4
Thecc.07G145700 Theobroma cacao HOM05D006162 ORTHO05D007627 7.5e-30 134.8 202 42.1
Rhsim08G0004700 Rhododendron simsii HOM05D006162 ORTHO05D007627 1.7e-29 133.7 201 42.3
Cpa.g.sc72.51 Carica papaya HOM05D006162 ORTHO05D000563 1.1e-28 131.0 201 42.8
Manes.12G145600 Manihot esculenta HOM05D006162 ORTHO05D007627 4.1e-28 129.0 201 40.3
RcHm_v2.0_Chr2g0118111 Rosa chinensis HOM05D006162 ORTHO05D007627 5.3e-28 128.6 199 42.2
Haze_25085 Corylus avellana HOM05D006162 ORTHO05D007627 4.5e-27 125.6 214 39.3
Potri.007G077100 Populus trichocarpa HOM05D006162 ORTHO05D007627 3.8e-26 122.5 183 42.6
CiPaw.03G131500 Carya illinoinensis HOM05D006162 ORTHO05D007627 8.5e-26 121.3 201 40.3
CsaV3_2G017830 Cucumis sativus L. HOM05D006162 ORTHO05D007627 8.5e-26 121.3 231 33.3
Lj4A860G2 Lonicera japonica HOM05D006162 ORTHO05D007627 1.9e-25 120.2 170 45.3
Sed0011946 Sechium edule HOM05D006162 ORTHO05D007627 2.5e-25 119.8 206 35.4
MELO3C020973.2 Cucumis melo HOM05D006162 ORTHO05D007627 4.2e-25 119.0 205 36.6
ClCG02G000880 Citrullus lanatus HOM05D006162 ORTHO05D007627 1.2e-24 117.5 206 36.4
Lalb_Chr13g0296301 Lupinus albus HOM05D006162 ORTHO05D007627 1.6e-24 117.1 200 37.5
FAN26G3317 Fragaria x ananassa HOM05D006162 ORTHO05D007627 3.6e-24 115.9 208 36.5
Glyma.08G145100 Glycine max HOM05D006162 ORTHO05D007627 4.7e-24 115.5 210 37.1
MD01G1015800 Malus domestica HOM05D006162 ORTHO05D007627 4.7e-24 115.5 202 38.6
PSO541G4150 Papaver somniferum HOM05D006162 ORTHO05D007627 4.7e-24 115.5 200 40.0
Lj4g0017392 Lotus japonicus HOM05D006162 ORTHO05D007627 1.0e-23 114.4 203 35.5
PSO675G6781 Papaver somniferum HOM05D006162 ORTHO05D007627 1.8e-23 113.6 196 37.2
vmacro18055 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 1.8e-23 113.6 208 39.4
Peaxi162Scf00025g03226 Petunia axillaris HOM05D006162 ORTHO05D007627 3.0e-23 112.8 208 38.0
Glyma.05G186500 Glycine max HOM05D006162 ORTHO05D007627 4.0e-23 112.5 205 36.1
Nitab4.5_0000184g0020 Nicotiana tabacum HOM05D006162 ORTHO05D007627 1.5e-22 110.5 215 37.2
Cc07_g16680 Coffea canephora HOM05D006162 ORTHO05D007627 2.6e-22 109.8 208 38.0
Oeu001984.1 Olea europaea HOM05D006162 ORTHO05D007627 4.4e-22 109.0 144 47.2
Sopen04g022820 Solanum pennellii HOM05D006162 ORTHO05D007627 4.4e-22 109.0 205 35.1
Ca_17673_v3 Cicer arietinum L. HOM05D006162 ORTHO05D007627 5.7e-22 108.6 202 37.1
Prupe.6G165900 Prunus persica HOM05D006162 ORTHO05D007627 5.7e-22 108.6 210 38.1
Sabra07G0065000 Salix brachista HOM05D006162 ORTHO05D007627 7.5e-22 108.2 130 50.0
arahy.Tifrunner.gnm1.ann1.QP02N2 Arachis hypogaea HOM05D006162 ORTHO05D007627 1.3e-21 107.5 200 34.0
COL.COLO4_17421 Corchorus olitorius HOM05D000398 ORTHO05D007627 1.3e-21 107.5 196 36.7
CAN.G452.13 Capsicum annuum HOM05D006162 ORTHO05D007627 1.7e-21 107.1 206 37.4
PGSC0003DMG400019694 Solanum tuberosum HOM05D006162 ORTHO05D007627 1.7e-21 107.1 207 37.2
arahy.Tifrunner.gnm1.ann1.2PK97N Arachis hypogaea HOM05D006162 ORTHO05D007627 2.2e-21 106.7 94 54.3
FAN23G1837 Fragaria x ananassa HOM05D006162 ORTHO05D007627 2.2e-21 106.7 199 35.7
Phvul.002G267600 Phaseolus vulgaris HOM05D006162 ORTHO05D007627 2.2e-21 106.7 202 33.2
TPR.G2184 Trifolium pratense HOM05D006162 ORTHO05D007627 2.2e-21 106.7 195 34.9
Nitab4.5_0007426g0010 Nicotiana tabacum HOM05D006162 ORTHO05D007627 2.8e-21 106.3 212 35.8
Solyc04g051410.4 Solanum lycopersicum HOM05D006162 ORTHO05D007627 2.8e-21 106.3 204 34.3
CDE08G0720 Ceratophyllum demersum HOM05D006162 ORTHO05D007627 1.1e-20 104.4 207 33.8
FAN28G1724 Fragaria x ananassa HOM05D006162 ORTHO05D007627 1.1e-20 104.4 201 36.3
Hma1.2p1_0220F.1_g092950 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 1.4e-20 104.0 75 68.0
Eucgr.H04890 Eucalyptus grandis HOM05D006162 ORTHO05D007627 4.1e-20 102.4 201 35.8
TWI79G1464 Tripterygium wilfordii HOM05D006162 ORTHO05D007627 5.4e-20 102.1 203 34.0
ECA238G0813 Erigeron canadensis HOM05D006162 ORTHO05D007627 9.1e-20 101.3 89 57.3
CANSAT01G0187 Cannabis sativa HOM05D006162 ORTHO05D007627 1.6e-19 100.5 208 37.5
FAN19G1907 Fragaria x ananassa HOM05D006162 ORTHO05D007627 1.6e-19 100.5 199 35.2
VMungo0251G2144 Vigna mungo HOM05D006162 ORTHO05D007627 2.0e-19 100.1 94 51.1
Hund19624 Selenicereus undatus HOM05D006162 ORTHO05D007627 5.9e-19 98.6 205 36.6
Thhalv10025021m.g Eutrema salsugineum HOM05D006162 ORTHO05D007627 2.9e-18 96.3 82 62.2
AUR62017952 Chenopodium quinoa HOM05D006162 ORTHO05D007627 5.0e-18 95.5 80 63.8
AUR62044023 Chenopodium quinoa HOM05D006162 ORTHO05D007627 5.0e-18 95.5 80 63.8
SGA_v2.0_scaffold2G01268 Striga asiatica HOM05D006162 ORTHO05D007627 5.0e-18 95.5 86 55.8
DCAR_011464 Daucus carota HOM05D006162 ORTHO05D007627 1.1e-17 94.4 94 55.3
EL10Ac6g15232 Beta vulgaris HOM05D006162 ORTHO05D007627 1.5e-17 94.0 124 49.2
Migut.H02454 Erythranthe guttata HOM05D006162 ORTHO05D007627 1.5e-17 94.0 85 56.5
AT4G39370 Arabidopsis thaliana HOM05D006162 ORTHO05D007627 3.2e-17 92.8 77 63.6
AUR62003642 Chenopodium quinoa HOM05D006162 ORTHO05D007627 3.2e-17 92.8 79 60.8
AL7G11390 Arabidopsis lyrata HOM05D006162 ORTHO05D007627 7.2e-17 91.7 82 61.0
Sc16g0004090 Simmondsia chinensis HOM05D006162 ORTHO05D007627 7.2e-17 91.7 80 60.0
Carub.0007s0129 Capsella rubella HOM05D006162 ORTHO05D007627 1.2e-16 90.9 77 62.3
HanXRQChr14g0446061 Helianthus annuus HOM05D006162 ORTHO05D007627 2.8e-16 89.7 89 51.7
Ah.02g123760 Amaranthus hybridus HOM05D006162 ORTHO05D007627 8.0e-16 88.2 82 61.0
A08p23610 Brassica napus HOM05D006162 ORTHO05D007627 1.4e-15 87.4 75 62.7
Medtr8g092350 Medicago truncatula HOM05D006162 ORTHO05D007627 1.4e-15 87.4 95 51.6
PGR102G2965 Punica granatum HOM05D006162 ORTHO05D007627 2.3e-15 86.7 201 32.3
Aa31LG6G15910 Aethionema arabicum HOM05D006162 ORTHO05D007627 3.0e-15 86.3 73 63.0
BcaC01g00286 Brassica carinata HOM05D006162 ORTHO05D007627 3.0e-15 86.3 75 61.3
C03p77810 Brassica napus HOM05D006162 ORTHO05D007627 3.0e-15 86.3 75 61.3
BolC3t20037H Brassica oleracea HOM05D006162 ORTHO05D007627 3.0e-15 86.3 75 61.3
THA.LOC104824832 Tarenaya hassleriana HOM05D006162 ORTHO05D007627 3.0e-15 86.3 77 59.7
Sp7g36490 Schrenkiella parvula HOM05D006162 ORTHO05D007627 4.0e-15 85.9 131 42.7
BraA08t34318Z Brassica rapa HOM05D006162 ORTHO05D007627 6.8e-15 85.1 75 61.3
ATR0584G096 Amborella trichopoda HOM05D006162 ORTHO05D007627 8.8e-15 84.7 211 35.1
Psat7g049400 Pisum sativum HOM05D006162 ORTHO05D007627 8.8e-15 84.7 196 32.7
Lsat_1_v5_gn_2_67341 Lactuca sativa HOM05D006162 ORTHO05D007627 1.2e-14 84.3 85 52.9
BcaB03g12289 Brassica carinata HOM05D006162 ORTHO05D007627 2.6e-14 83.2 76 60.5
unitig_899.g14618 Utricularia gibba HOM05D006162 ORTHO05D007627 4.4e-14 82.4 79 54.4
Zm00001eb082910 Zea mays HOM05D006162 ORTHO05D007627 1.1e-12 77.8 78 48.7
HPP92_009257 Vanilla planifolia HOM05D006162 ORTHO05D007627 5.9e-11 72.0 201 28.4
SEGI_22619 Sequoiadendron giganteum HOM05D006162 ORTHO05D007627 8.6e-10 68.2 308 25.3
vmacro18645 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 1.1e-09 67.8 90 42.2
SMO340G0295 Selaginella moellendorffii HOM05D006162 ORTHO05D007627 4.3e-09 65.9 72 48.6
SEGI_05196 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 4.3e-09 65.9 91 40.7
Os08g0528100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 2.8e-08 63.2 109 38.5
Oeu049032.1 Olea europaea HOM05D003912 ORTHO05D004409 3.0e-07 59.7 83 44.6
Pp3c22_11200 Physcomitrium patens HOM05D003912 ORTHO05D004409 3.0e-07 59.7 77 42.9
Os09g0505100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 6.8e-07 58.5 99 36.4
THA.LOC104801027 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 6.8e-07 58.5 74 43.2
C08p52040 Brassica napus HOM05D003912 ORTHO05D004409 8.9e-07 58.2 75 42.7
BolC8t52736H Brassica oleracea HOM05D003912 ORTHO05D004409 8.9e-07 58.2 75 42.7
Zm00001eb102350 Zea mays HOM05D003912 ORTHO05D004409 8.9e-07 58.2 88 40.9
BcaC07g42158 Brassica carinata HOM05D003912 ORTHO05D004409 1.2e-06 57.8 75 42.7
Manes.15G054100 Manihot esculenta HOM05D003912 ORTHO05D004409 1.5e-06 57.4 84 40.5
Sabra17G0047100 Salix brachista HOM05D003912 ORTHO05D004409 1.5e-06 57.4 82 37.8
Pp3c19_20640 Physcomitrium patens HOM05D003912 ORTHO05D004409 2.6e-06 56.6 76 40.8
SEGI_16543 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 2.6e-06 56.6 79 40.5
THA.LOC104826119 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 2.6e-06 56.6 73 46.6
HPP92_013626 Vanilla planifolia HOM05D003912 ORTHO05D004409 2.6e-06 56.6 74 41.9
AUR62020827 Chenopodium quinoa HOM05D003912 ORTHO05D004409 3.4e-06 56.2 83 34.9
AT2G32780 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 4.4e-06 55.8 83 39.8
Potri.017G055600 Populus trichocarpa HOM05D003912 ORTHO05D004409 4.4e-06 55.8 83 38.6
Duzib212G0883 Durio zibethinus HOM05D003912 ORTHO05D004409 5.7e-06 55.5 75 42.7
Lsat_1_v5_gn_6_60801 Lactuca sativa HOM05D003912 ORTHO05D004409 5.7e-06 55.5 83 39.8
Aqoxy2G03850 Aquilegia oxysepala HOM05D003912 ORTHO05D004409 7.5e-06 55.1 101 34.7
Nitab4.5_0002260g0180 Nicotiana tabacum HOM05D003912 ORTHO05D004409 7.5e-06 55.1 74 41.9
Oeu055784.1 Olea europaea HOM05D003912 ORTHO05D004409 7.5e-06 55.1 74 39.2
FAN12G1567 Fragaria x ananassa HOM05D003912 ORTHO05D004409 9.8e-06 54.7 86 38.4
Medtr3g083600 Medicago truncatula HOM05D003912 ORTHO05D004409 9.8e-06 54.7 81 39.5
Os08g0528000 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 9.8e-06 54.7 75 44.0


User provided reference genes

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