Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 6.4e-99 364.0 174 100.0
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 1.2e-65 253.4 158 79.1
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 1.7e-59 233.0 160 70.6
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 2.3e-56 222.6 159 66.7
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 3.0e-56 222.2 159 67.3
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 3.0e-56 222.2 159 67.3
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 2.0e-55 219.5 157 68.2
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 1.3e-54 216.9 155 66.5
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 2.8e-54 215.7 155 68.4
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 2.8e-54 215.7 159 66.0
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 3.7e-54 215.3 159 64.8
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 3.7e-54 215.3 158 66.5
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 8.2e-54 214.2 154 68.2
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 2.4e-53 212.6 156 66.0
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 4.1e-53 211.8 171 62.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 9.1e-53 210.7 158 65.2
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 1.5e-52 209.9 157 63.7
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 1.5e-52 209.9 155 66.5
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 2.6e-52 209.1 155 67.1
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 4.5e-52 208.4 159 65.4
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 7.7e-52 207.6 157 61.8
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 3.8e-51 205.3 158 62.0
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 8.5e-51 204.1 153 63.4
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 8.5e-51 204.1 167 55.7
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 2.5e-50 202.6 151 64.2
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 3.2e-50 202.2 161 60.2
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 3.2e-50 202.2 158 60.8
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 4.2e-50 201.8 156 60.9
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 7.2e-50 201.1 156 63.5
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 9.4e-50 200.7 156 60.9
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 1.2e-49 200.3 155 62.6
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.2e-49 200.3 145 66.2
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 1.6e-49 199.9 155 63.9
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 1.6e-49 199.9 158 60.1
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 2.1e-49 199.5 154 63.0
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 2.1e-49 199.5 153 62.1
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 4.7e-49 198.4 166 55.4
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 6.1e-49 198.0 158 60.1
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 6.1e-49 198.0 149 64.4
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 6.1e-49 198.0 153 64.1
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 8.0e-49 197.6 159 59.1
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 8.0e-49 197.6 158 57.6
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 1.0e-48 197.2 159 60.4
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 2.3e-48 196.1 152 61.8
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 5.2e-48 194.9 156 62.2
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 8.8e-48 194.1 154 61.0
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 1.5e-47 193.4 158 58.9
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 2.0e-47 193.0 157 58.0
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 2.6e-47 192.6 158 59.5
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 2.6e-47 192.6 154 59.1
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 4.4e-47 191.8 155 61.9
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 4.4e-47 191.8 154 59.1
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 5.7e-47 191.4 162 59.3
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.7e-46 189.9 167 57.5
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 2.8e-46 189.1 154 57.8
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 4.8e-46 188.3 168 56.0
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 6.3e-46 188.0 143 63.6
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 6.3e-46 188.0 147 63.3
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 6.3e-46 188.0 147 62.6
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.8e-45 186.4 155 61.3
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 1.8e-45 186.4 160 56.9
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 1.8e-45 186.4 150 58.7
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 7.0e-45 184.5 148 61.5
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 1.2e-44 183.7 148 58.1
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 4.5e-44 181.8 154 54.5
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 5.9e-44 181.4 147 57.1
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 7.7e-44 181.0 151 61.6
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 1.3e-43 180.3 154 55.2
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 2.9e-43 179.1 143 62.9
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 2.9e-43 179.1 154 53.9
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 1.9e-42 176.4 158 54.4
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 4.2e-42 175.3 151 57.0
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 2.1e-41 172.9 157 56.1
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 4.7e-41 171.8 149 55.0
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 1.0e-40 170.6 151 58.9
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 1.8e-40 169.9 160 55.0
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.5e-39 166.8 155 52.9
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 2.6e-39 166.0 157 54.1
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 4.4e-39 165.2 157 53.5
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 4.4e-39 165.2 141 57.4
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 7.5e-39 164.5 150 54.0
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.3e-38 163.7 154 51.3
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 3.7e-38 162.2 151 52.3
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 3.7e-38 162.2 147 51.7
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 8.2e-38 161.0 147 51.7
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 3.1e-37 159.1 151 53.6
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 9.1e-37 157.5 122 58.2
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 7.7e-36 154.5 150 50.0
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 1.3e-35 153.7 151 50.3
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 1.3e-35 153.7 151 50.3
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 1.7e-35 153.3 151 50.3
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 1.7e-35 153.3 151 50.3
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 3.8e-35 152.1 150 50.0
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 3.8e-35 152.1 160 45.0
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 8.5e-35 151.0 151 52.3
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 1.9e-34 149.8 156 53.2
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 3.2e-34 149.1 158 47.5
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 4.2e-34 148.7 125 56.0
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 7.2e-34 147.9 123 62.6
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 2.1e-33 146.4 146 51.4
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 4.0e-32 142.1 158 41.8
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.5e-31 140.2 159 48.4
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 2.0e-31 139.8 149 46.3
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 5.7e-31 138.3 172 41.9
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.7e-30 136.7 156 48.7
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 4.8e-30 135.2 151 51.0
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 6.3e-30 134.8 153 50.3
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.8e-29 133.3 147 46.3
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 4.1e-29 132.1 147 47.6
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 1.9e-26 123.2 150 40.0
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 1.5e-18 97.1 129 38.8
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 4.0e-16 89.0 153 32.0
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 3.7e-14 82.4 132 39.4
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 1.4e-13 80.5 62 59.7
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 1.5e-07 60.5 105 37.1
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 2.0e-07 60.1 56 57.1
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 5.8e-07 58.5 139 32.4
CDE05G1412 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 9.8e-07 57.8 134 35.8


User provided reference genes

Program Settings