Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.2e-161 573.2 290 100.0
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 5.6e-148 527.7 290 90.7
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 1.3e-141 506.5 290 87.6
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 1.2e-139 500.0 290 85.9
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 4.0e-138 495.0 290 85.2
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 5.8e-137 491.1 289 83.4
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 5.8e-137 491.1 290 84.5
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 4.9e-136 488.0 290 82.4
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 1.9e-135 486.1 290 83.4
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 2.4e-135 485.7 290 83.4
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 3.2e-135 485.3 290 81.4
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 7.1e-135 484.2 290 81.4
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 7.1e-135 484.2 289 82.4
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 1.2e-134 483.4 290 82.4
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.6e-134 483.0 288 81.9
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 3.5e-134 481.9 290 81.4
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 6.0e-134 481.1 288 82.3
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 7.8e-134 480.7 287 84.0
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 1.3e-133 479.9 290 81.7
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 3.0e-133 478.8 289 81.0
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 5.1e-133 478.0 289 82.0
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 8.7e-133 477.2 289 80.6
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 8.7e-133 477.2 290 80.0
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 1.5e-132 476.5 289 80.6
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.9e-132 476.1 289 80.6
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.9e-132 476.1 289 81.7
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 1.9e-132 476.1 288 81.9
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.5e-132 475.7 286 82.2
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 3.3e-132 475.3 289 80.6
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 4.3e-132 474.9 291 80.4
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 5.6e-132 474.6 286 82.2
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 5.6e-132 474.6 286 82.2
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 9.6e-132 473.8 289 81.7
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 1.6e-131 473.0 289 80.6
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 2.1e-131 472.6 290 81.0
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 2.8e-131 472.2 289 80.3
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 6.2e-131 471.1 290 79.3
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 1.1e-130 470.3 289 81.3
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 1.4e-130 469.9 289 80.6
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 6.9e-130 467.6 290 79.7
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 9.0e-130 467.2 289 78.2
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 9.0e-130 467.2 287 80.8
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.2e-129 466.8 290 79.7
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 2.0e-129 466.1 290 79.7
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 2.0e-129 466.1 289 79.2
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 2.0e-129 466.1 302 78.5
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 2.6e-129 465.7 290 77.2
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 3.4e-129 465.3 287 81.9
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 3.4e-129 465.3 289 78.9
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 3.4e-129 465.3 287 80.5
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 9.9e-129 463.8 290 78.3
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 9.9e-129 463.8 287 80.5
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 1.3e-128 463.4 285 78.9
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 2.2e-128 462.6 291 78.7
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 2.2e-128 462.6 289 79.2
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 2.9e-128 462.2 290 80.3
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 4.9e-128 461.5 288 79.9
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 6.4e-128 461.1 290 76.2
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 8.4e-128 460.7 289 77.9
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.1e-127 460.3 290 77.2
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.4e-127 459.9 288 78.5
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 1.9e-127 459.5 289 77.5
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 1.9e-127 459.5 289 77.2
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 1.9e-127 459.5 289 79.9
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 1.9e-127 459.5 286 79.4
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 1.9e-127 459.5 289 78.5
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 2.4e-127 459.1 284 78.2
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 3.2e-127 458.8 290 77.9
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 3.2e-127 458.8 290 75.9
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 4.2e-127 458.4 289 77.9
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 5.4e-127 458.0 284 79.9
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.2e-126 456.8 289 75.8
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 1.6e-126 456.4 289 76.8
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 2.1e-126 456.1 289 76.8
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 2.7e-126 455.7 290 77.9
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 4.6e-126 454.9 290 75.2
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 6.0e-126 454.5 288 77.8
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 6.0e-126 454.5 291 79.0
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 7.9e-126 454.1 289 76.5
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 7.9e-126 454.1 289 76.1
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 7.9e-126 454.1 289 76.1
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 1.0e-125 453.8 289 76.5
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 1.3e-125 453.4 289 76.5
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 1.7e-125 453.0 289 76.5
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 3.0e-125 452.2 290 78.3
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 3.9e-125 451.8 289 75.1
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 3.9e-125 451.8 289 75.1
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 3.9e-125 451.8 289 75.1
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 3.9e-125 451.8 289 75.4
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 3.9e-125 451.8 290 77.6
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 5.1e-125 451.4 289 76.1
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 6.6e-125 451.1 289 75.1
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 6.6e-125 451.1 289 75.1
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 6.6e-125 451.1 289 76.1
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 1.9e-124 449.5 286 76.2
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 2.5e-124 449.1 289 75.1
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 3.3e-124 448.7 289 74.4
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 3.3e-124 448.7 289 76.5
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 1.3e-123 446.8 289 74.7
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 1.6e-123 446.4 293 78.2
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 2.1e-123 446.0 322 72.7
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 6.2e-123 444.5 287 77.4
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 8.1e-123 444.1 288 78.1
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 1.4e-122 443.4 303 74.3
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 6.9e-122 441.0 306 75.8
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 9.0e-122 440.7 301 75.1
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 9.0e-122 440.7 307 74.3
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 9.0e-122 440.7 293 76.8
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 1.5e-121 439.9 287 74.2
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 8.4e-120 434.1 292 74.3
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 8.4e-120 434.1 293 75.4
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 1.1e-119 433.7 287 73.9
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 2.4e-119 432.6 287 71.8
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 9.3e-119 430.6 291 73.2
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 3.5e-118 428.7 286 72.0
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 6.0e-118 427.9 287 72.1
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 3.9e-117 425.2 287 70.4
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.5e-116 423.3 261 81.2
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 4.3e-116 421.8 270 75.6
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 7.4e-116 421.0 290 73.4
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 3.7e-115 418.7 285 71.9
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 3.1e-114 415.6 290 70.0
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 2.0e-113 412.9 289 70.2
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 5.8e-113 411.4 448 53.1
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.7e-112 409.8 292 74.3
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 6.5e-112 407.9 291 69.8
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 6.5e-112 407.9 283 71.0
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 8.4e-112 407.5 291 69.4
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.4e-111 406.8 291 69.4
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 2.5e-111 406.0 299 71.6
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 5.5e-111 404.8 293 70.0
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.2e-110 403.7 290 68.6
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 2.1e-110 402.9 286 68.9
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 3.5e-110 402.1 290 68.3
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 7.9e-110 401.0 287 68.6
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 1.8e-109 399.8 232 84.1
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 2.3e-109 399.4 291 69.8
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 2.5e-108 396.0 307 67.1
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 4.1e-106 388.7 283 66.8
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 1.7e-104 383.3 256 71.9
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 1.6e-102 376.7 254 72.4
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 3.6e-102 375.6 230 80.0
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 7.7e-97 357.8 232 74.1
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 1.2e-94 350.5 285 63.2
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 3.9e-93 345.5 298 63.8
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 2.6e-84 316.2 282 58.5
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.4e-82 309.7 203 77.8
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.1e-74 284.3 270 58.5
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 9.1e-74 281.2 287 51.2
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 1.6e-73 280.4 285 51.6
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 1.5e-71 273.9 282 50.7
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 4.4e-68 262.3 164 79.3
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 3.5e-65 252.7 286 45.5
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 5.0e-56 222.2 151 70.9
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 4.7e-54 215.7 113 90.3
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 1.8e-53 213.8 151 72.8
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.4e-45 187.6 139 70.5
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 8.6e-24 115.2 83 71.1
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 1.5e-23 114.4 82 73.2
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.8e-22 110.2 83 68.7
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.4e-21 107.8 83 68.7
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 8.9e-21 105.1 124 48.4
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 1.2e-20 104.8 74 73.0
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 2.6e-20 103.6 63 79.4
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 7.6e-20 102.1 85 63.5
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 9.9e-20 101.7 66 75.8
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 1.3e-19 101.3 152 41.4
Cfa026260 Carpinus fangiana HOM05D004135 ORTHO05D125562 3.2e-18 96.7 299 29.1
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 2.3e-16 90.5 57 78.9
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 8.7e-16 88.6 70 64.3
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 1.5e-12 77.8 58 65.5
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 1.5e-12 77.8 58 65.5
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 8.4e-11 72.0 55 67.3
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 1.0e-08 65.1 65 55.4
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 1.9e-07 60.8 32 84.4
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 7.4e-07 58.9 41 61.0


User provided reference genes

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