Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 0.0e+00 1113.6 534 100.0
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 8.2e-262 906.7 526 81.6
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 3.4e-252 874.8 490 82.9
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 7.2e-242 840.5 494 78.9
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 2.7e-241 838.6 493 78.1
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 8.8e-240 833.6 497 78.7
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 2.0e-239 832.4 496 77.8
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 7.4e-239 830.5 489 78.5
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 4.8e-238 827.8 481 79.0
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 4.8e-238 827.8 482 78.4
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 1.4e-237 826.2 527 73.8
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 1.4e-237 826.2 496 77.8
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 2.4e-237 825.5 483 78.3
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 2.4e-237 825.5 496 76.6
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 5.3e-237 824.3 477 79.7
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 2.6e-236 822.0 504 77.0
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 4.5e-236 821.2 511 75.5
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 1.3e-235 819.7 483 77.6
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 5.0e-235 817.8 485 78.4
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 5.0e-235 817.8 495 77.4
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 5.0e-235 817.8 483 77.8
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 5.0e-235 817.8 483 77.6
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 6.5e-235 817.4 475 79.4
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 8.5e-235 817.0 494 77.3
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 1.1e-234 816.6 480 78.5
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 3.2e-234 815.1 482 78.8
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 5.5e-234 814.3 499 77.6
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 9.4e-234 813.5 487 77.4
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 1.6e-233 812.8 532 73.5
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 6.1e-233 810.8 499 77.2
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 1.0e-232 810.1 482 78.4
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 1.4e-232 809.7 493 77.1
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 1.8e-232 809.3 483 78.3
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 5.2e-232 807.7 493 76.9
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 2.6e-231 805.4 492 75.6
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 3.3e-231 805.1 490 75.3
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 4.4e-231 804.7 476 78.4
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 5.7e-231 804.3 476 78.4
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 2.8e-230 802.0 484 76.9
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 3.7e-230 801.6 486 76.5
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 1.1e-229 800.0 471 78.8
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 1.2e-228 796.6 487 76.6
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 5.9e-228 794.3 544 70.2
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 5.9e-228 794.3 524 72.7
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 1.7e-227 792.7 481 76.5
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 1.1e-226 790.0 483 75.8
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 1.9e-226 789.3 487 75.8
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 1.4e-224 783.1 457 80.5
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 4.0e-224 781.6 487 75.6
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 8.8e-224 780.4 485 74.4
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 1.5e-223 779.6 504 73.2
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 2.6e-223 778.9 495 73.1
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 2.6e-223 778.9 519 70.5
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 4.4e-223 778.1 476 76.1
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 2.8e-222 775.4 494 73.3
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 4.8e-222 774.6 481 74.4
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 6.3e-222 774.2 487 73.3
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 4.1e-221 771.5 490 73.7
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 2.0e-220 769.2 492 73.2
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 2.7e-220 768.8 497 72.0
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 4.5e-220 768.1 518 71.0
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 7.7e-220 767.3 495 72.3
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 3.8e-219 765.0 501 70.9
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 8.5e-219 763.8 482 74.3
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 1.1e-218 763.5 489 74.2
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 3.2e-218 761.9 520 70.0
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 5.5e-218 761.1 475 75.4
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 5.5e-218 761.1 481 73.4
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 7.2e-218 760.8 431 81.7
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 9.4e-218 760.4 481 73.6
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 9.4e-218 760.4 484 74.8
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 1.8e-216 756.1 535 67.7
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 7.5e-215 750.7 496 72.2
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 1.1e-213 746.9 483 72.5
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 9.1e-213 743.8 553 65.8
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 2.7e-212 742.3 484 72.5
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 5.9e-212 741.1 473 74.0
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 2.1e-209 732.6 458 72.9
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 3.4e-207 725.3 513 69.6
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 4.4e-207 724.9 509 70.3
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 1.7e-203 713.0 507 69.4
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 3.8e-203 711.8 507 68.2
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 1.9e-202 709.5 474 69.8
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 8.9e-200 700.7 493 66.9
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 2.6e-199 699.1 484 68.6
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 5.0e-195 684.9 500 67.6
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 2.2e-190 669.5 393 80.7
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 5.4e-189 664.8 483 67.1
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 1.6e-188 663.3 487 64.5
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 3.9e-187 658.7 499 62.3
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 7.3e-186 654.4 473 64.7
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 1.6e-185 653.3 487 63.4
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 2.5e-178 629.4 481 64.2
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 6.2e-177 624.8 381 77.4
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.7e-174 616.7 394 75.1
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 1.2e-172 610.5 394 72.8
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 4.2e-165 585.5 392 72.4
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 3.9e-163 578.9 383 72.3
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 1.8e-160 570.1 473 59.2
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 4.2e-157 558.9 392 68.4
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.5e-154 550.4 360 71.7
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 3.4e-151 539.3 474 56.5
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 2.1e-145 520.0 346 72.0
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 6.2e-145 518.5 318 74.8
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 1.0e-139 501.1 255 90.2
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 3.0e-139 499.6 482 54.6
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 6.3e-137 491.9 359 67.7
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 3.4e-127 459.5 458 52.0
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 1.6e-124 450.7 288 71.2
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 1.8e-123 447.2 484 46.5
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 1.8e-123 447.2 367 60.5
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 2.8e-121 439.9 281 73.3
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 2.2e-110 403.7 329 61.1
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 1.3e-94 351.3 186 82.3
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 1.6e-76 291.2 163 82.2
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 1.4e-72 278.1 479 38.2
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 6.2e-52 209.5 106 85.8
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 3.0e-46 190.7 94 86.2
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 9.9e-42 175.6 139 68.3
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 6.9e-35 152.9 69 94.2
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.3e-33 148.7 73 86.3
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 3.8e-33 147.1 97 68.0
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 2.5e-29 134.4 214 36.9
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 9.6e-29 132.5 135 51.9
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 8.4e-25 119.4 97 61.9
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 7.9e-23 112.8 199 35.2
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 2.3e-22 111.3 70 74.3
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 3.8e-17 94.0 55 81.8
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 5.0e-09 67.0 48 64.6
BolC1t01666H Brassica oleracea HOM05D005885 ORTHO05D023940 5.1e-06 57.0 50 50.0


User provided reference genes

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