Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26240 Nelumbo nucifera HOM05D002081 ORTHO05D002088 2.5e-53 211.8 105 100.0
TAR365G0117 Trochodendron aralioides HOM05D002081 ORTHO05D002088 3.6e-20 101.7 61 82.0
Duzib177G0896 Durio zibethinus HOM05D002081 ORTHO05D002088 4.4e-18 94.7 61 75.4
Aqoxy5G00511 Aquilegia oxysepala HOM05D002081 ORTHO05D002088 5.7e-18 94.4 61 73.8
Gohir.A13G173700 Gossypium hirsutum HOM05D002081 ORTHO05D002088 5.7e-18 94.4 61 75.4
Gohir.D13G179400 Gossypium hirsutum HOM05D002081 ORTHO05D002088 5.7e-18 94.4 61 75.4
Gorai.013G204700 Gossypium raimondii HOM05D002081 ORTHO05D002088 5.7e-18 94.4 61 75.4
Thecc.05G304600 Theobroma cacao HOM05D002081 ORTHO05D002088 7.5e-18 94.0 61 75.4
Duzib106G1630 Durio zibethinus HOM05D002081 ORTHO05D002088 1.7e-17 92.8 61 73.8
Nn1g02215 Nelumbo nucifera HOM05D002081 ORTHO05D002088 1.7e-17 92.8 61 75.4
Thhalv10004745m.g Eutrema salsugineum HOM05D002081 ORTHO05D002088 6.3e-17 90.9 62 75.8
Cpa.g.sc48.41 Carica papaya HOM05D002081 ORTHO05D002088 1.4e-16 89.7 61 72.1
COL.COLO4_13480 Corchorus olitorius HOM05D002081 ORTHO05D002088 1.4e-16 89.7 61 73.8
PSO063G5958 Papaver somniferum HOM05D002081 ORTHO05D002088 7.0e-16 87.4 65 67.7
GSVIVG01000042001 Vitis vinifera HOM05D002081 ORTHO05D002088 7.0e-16 87.4 62 72.6
TPR.G33220 Trifolium pratense HOM05D002081 ORTHO05D002088 9.1e-16 87.0 61 70.5
AT5G27490 Arabidopsis thaliana HOM05D002081 ORTHO05D002088 1.2e-15 86.7 62 71.0
BolC1t05704H Brassica oleracea HOM05D002081 ORTHO05D002088 1.2e-15 86.7 64 67.2
Sp2g20700 Schrenkiella parvula HOM05D002081 ORTHO05D002088 1.2e-15 86.7 61 72.1
Eucgr.H04483 Eucalyptus grandis HOM05D002081 ORTHO05D002088 1.6e-15 86.3 61 68.9
Actinidia19793 Actinidia chinensis HOM05D002081 ORTHO05D002088 2.0e-15 85.9 65 70.8
TAR362G0444 Trochodendron aralioides HOM05D002081 ORTHO05D002088 2.0e-15 85.9 61 73.8
HPP92_006343 Vanilla planifolia HOM05D002081 ORTHO05D002088 2.0e-15 85.9 61 67.2
Ah.06g189290 Amaranthus hybridus HOM05D002081 ORTHO05D002088 2.7e-15 85.5 63 65.1
BraA03t12582Z Brassica rapa HOM05D002081 ORTHO05D002088 2.7e-15 85.5 63 68.3
Ca_09360_v3 Cicer arietinum L. HOM05D002081 ORTHO05D002088 2.7e-15 85.5 72 63.9
Ca_09361_v3 Cicer arietinum L. HOM05D002081 ORTHO05D002088 2.7e-15 85.5 72 63.9
AT3G05280 Arabidopsis thaliana HOM05D002081 ORTHO05D002088 3.5e-15 85.1 62 69.4
BcaB04g21452 Brassica carinata HOM05D002081 ORTHO05D002088 3.5e-15 85.1 62 67.7
CANSAT54G1741 Cannabis sativa HOM05D002081 ORTHO05D002088 3.5e-15 85.1 61 68.9
Carub.0003s0453 Capsella rubella HOM05D002081 ORTHO05D002088 3.5e-15 85.1 62 69.4
CARHR079620 Cardamine hirsuta HOM05D002081 ORTHO05D002088 3.5e-15 85.1 62 69.4
Thhalv10021283m.g Eutrema salsugineum HOM05D002081 ORTHO05D002088 3.5e-15 85.1 62 69.4
Sp3g04130 Schrenkiella parvula HOM05D002081 ORTHO05D002088 3.5e-15 85.1 62 69.4
Aa31LG5G15750 Aethionema arabicum HOM05D002081 ORTHO05D002088 4.5e-15 84.7 62 69.4
THA.LOC104802804 Tarenaya hassleriana HOM05D002081 ORTHO05D002088 4.5e-15 84.7 62 69.4
AL6G39520 Arabidopsis lyrata HOM05D002081 ORTHO05D002088 5.9e-15 84.3 61 65.6
SalBow2G0074 Salvia bowleyana HOM05D002081 ORTHO05D002088 5.9e-15 84.3 64 67.2
AL3G15720 Arabidopsis lyrata HOM05D002081 ORTHO05D002088 1.0e-14 83.6 62 67.7
BcaB04g19274 Brassica carinata HOM05D002081 ORTHO05D002088 1.0e-14 83.6 61 65.6
A03p34080 Brassica napus HOM05D002081 ORTHO05D002088 1.0e-14 83.6 62 67.7
Dinv40279 Davidia involucrata HOM05D002081 ORTHO05D002088 1.0e-14 83.6 62 69.4
Lj1g0022131 Lotus japonicus HOM05D002081 ORTHO05D002088 1.0e-14 83.6 61 67.2
Hund07065 Selenicereus undatus HOM05D002081 ORTHO05D002088 1.0e-14 83.6 61 63.9
SEGI_40211 Sequoiadendron giganteum HOM05D002081 ORTHO05D002088 1.0e-14 83.6 61 67.2
Sc09g0003210 Simmondsia chinensis HOM05D002081 ORTHO05D002088 1.0e-14 83.6 61 65.6
Cfa015110 Carpinus fangiana HOM05D002081 ORTHO05D002088 1.3e-14 83.2 61 65.6
CSS0023450 Camellia sinensis var. sinensis HOM05D002081 ORTHO05D002088 1.7e-14 82.8 62 69.4
Hma1.2p1_0033F.1_g020140 Hydrangea macrophylla HOM05D002081 ORTHO05D002088 1.7e-14 82.8 62 71.0
Potri.013G023400 Populus trichocarpa HOM05D002081 ORTHO05D002088 1.7e-14 82.8 64 64.1
RcHm_v2.0_Chr3g0454661 Rosa chinensis HOM05D002081 ORTHO05D002088 1.7e-14 82.8 62 67.7
ATR0706G136 Amborella trichopoda HOM05D002081 ORTHO05D002088 2.2e-14 82.4 61 65.6
BcaC05g30016 Brassica carinata HOM05D002081 ORTHO05D002088 2.2e-14 82.4 62 69.4
BolC5t34851H Brassica oleracea HOM05D002081 ORTHO05D002088 2.2e-14 82.4 62 69.4
Prupe.6G326800 Prunus persica HOM05D002081 ORTHO05D002088 2.2e-14 82.4 62 67.7
HPP92_024134 Vanilla planifolia HOM05D002081 ORTHO05D002088 2.2e-14 82.4 61 63.9
BcaB04g19273 Brassica carinata HOM05D002081 ORTHO05D002088 2.9e-14 82.0 62 66.1
C03p41470 Brassica napus HOM05D002081 ORTHO05D002088 2.9e-14 82.0 62 66.1
BolC3t16428H Brassica oleracea HOM05D002081 ORTHO05D002088 2.9e-14 82.0 62 66.1
CSS0001800 Camellia sinensis var. sinensis HOM05D002081 ORTHO05D002088 3.8e-14 81.6 62 69.4
Dinv23946 Davidia involucrata HOM05D002081 ORTHO05D002088 3.8e-14 81.6 62 69.4
TWI56G1185 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 3.8e-14 81.6 61 65.6
CDE04G1806 Ceratophyllum demersum HOM05D002081 ORTHO05D002088 5.0e-14 81.3 61 65.6
FvH4_6g05750 Fragaria vesca HOM05D002081 ORTHO05D002088 5.0e-14 81.3 62 67.7
FAN02G1310 Fragaria x ananassa HOM05D002081 ORTHO05D002088 5.0e-14 81.3 62 67.7
FAN05G1483 Fragaria x ananassa HOM05D002081 ORTHO05D002088 5.0e-14 81.3 62 67.7
FAN05G4253 Fragaria x ananassa HOM05D002081 ORTHO05D002088 5.0e-14 81.3 62 67.7
FAN09G0634 Fragaria x ananassa HOM05D002081 ORTHO05D002088 5.0e-14 81.3 62 67.7
FAN14G1729 Fragaria x ananassa HOM05D002081 ORTHO05D002088 5.0e-14 81.3 62 67.7
FAN14G5292 Fragaria x ananassa HOM05D002081 ORTHO05D002088 5.0e-14 81.3 62 67.7
Medtr7g113620 Medicago truncatula HOM05D002081 ORTHO05D002088 5.0e-14 81.3 61 65.6
QL03p041970 Quercus lobata HOM05D002081 ORTHO05D002088 5.0e-14 81.3 62 71.0
Gohir.D11G274600 Gossypium hirsutum HOM05D002081 ORTHO05D002088 6.5e-14 80.9 61 67.2
AUR62036539 Chenopodium quinoa HOM05D002081 ORTHO05D002088 8.5e-14 80.5 65 61.5
Gohir.A11G264400 Gossypium hirsutum HOM05D002081 ORTHO05D002088 8.5e-14 80.5 61 67.2
Gorai.007G296400 Gossypium raimondii HOM05D002081 ORTHO05D002088 8.5e-14 80.5 61 67.2
MD12G1220100 Malus domestica HOM05D002081 ORTHO05D002088 8.5e-14 80.5 62 67.7
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 8.5e-14 80.5 61 68.9
arahy.Tifrunner.gnm1.ann1.A3AWFZ Arachis hypogaea HOM05D002081 ORTHO05D002088 1.1e-13 80.1 61 67.2
arahy.Tifrunner.gnm1.ann1.NHE1TC Arachis hypogaea HOM05D002081 ORTHO05D002088 1.1e-13 80.1 61 67.2
CDE07G0618 Ceratophyllum demersum HOM05D002081 ORTHO05D002088 1.1e-13 80.1 61 63.9
ClCG03G016960 Citrullus lanatus HOM05D002081 ORTHO05D002088 1.1e-13 80.1 62 66.1
BNapus_Darmor_BZH_scaffold_114p00220 Brassica napus HOM05D002081 ORTHO05D002088 1.5e-13 79.7 62 67.7
BraA05t23021Z Brassica rapa HOM05D002081 ORTHO05D002088 1.5e-13 79.7 63 66.7
BraSC132t45514Z Brassica rapa HOM05D002081 ORTHO05D002088 1.5e-13 79.7 62 67.7
MELO3C015325.2 Cucumis melo HOM05D002081 ORTHO05D002088 1.9e-13 79.3 62 66.1
Oeu029692.2 Olea europaea HOM05D002081 ORTHO05D002088 1.9e-13 79.3 62 66.1
TWI12G1165 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 2.5e-13 79.0 59 64.4
C05p61910 Brassica napus HOM05D002081 ORTHO05D002088 3.2e-13 78.6 62 67.7
MBI17_g13558_MAGBIO Magnolia biondii HOM05D002081 ORTHO05D002088 4.2e-13 78.2 62 66.1
EL10Ac4g09344 Beta vulgaris HOM05D002081 ORTHO05D002088 5.5e-13 77.8 62 62.9
CsaV3_1G038980 Cucumis sativus L. HOM05D002081 ORTHO05D002088 5.5e-13 77.8 61 62.3
Sabra05G0035900 Salix brachista HOM05D002081 ORTHO05D002088 5.5e-13 77.8 64 62.5
Psat3g010720 Pisum sativum HOM05D002081 ORTHO05D002088 7.2e-13 77.4 62 64.5
PGR031G0270 Punica granatum HOM05D002081 ORTHO05D002088 7.2e-13 77.4 61 62.3
PGR083G2895 Punica granatum HOM05D002081 ORTHO05D002088 7.2e-13 77.4 64 62.5
MSTRG.22749 Avicennia marina HOM05D002081 ORTHO05D002088 9.5e-13 77.0 62 64.5
Peaxi162Scf00037g00230 Petunia axillaris HOM05D002081 ORTHO05D002088 9.5e-13 77.0 62 62.9
Potri.005G033900 Populus trichocarpa HOM05D002081 ORTHO05D002088 9.5e-13 77.0 65 64.6
Migut.I00760 Erythranthe guttata HOM05D002081 ORTHO05D002088 1.2e-12 76.6 62 62.9
Manes.09G166400 Manihot esculenta HOM05D002081 ORTHO05D002088 1.2e-12 76.6 61 59.0
Phvul.006G092500 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 1.2e-12 76.6 61 63.9
Lalb_Chr18g0045591 Lupinus albus HOM05D002081 ORTHO05D002088 1.6e-12 76.3 64 68.8
Ciclev10002100m.g Citrus clementina HOM05D002081 ORTHO05D002088 2.1e-12 75.9 62 64.5
PSO017G1346 Papaver somniferum HOM05D002081 ORTHO05D002088 2.1e-12 75.9 60 66.7
PGSC0003DMG400028610 Solanum tuberosum HOM05D002081 ORTHO05D002088 2.1e-12 75.9 62 64.5
vmacro19628 Vaccinium macrocarpon HOM05D002081 ORTHO05D002088 3.6e-12 75.1 63 66.7
Glyma.20G233500 Glycine max HOM05D002081 ORTHO05D002088 6.1e-12 74.3 85 51.8
Rhsim05G0142500 Rhododendron simsii HOM05D002081 ORTHO05D002088 6.1e-12 74.3 65 64.6
Lj9C31T1 Lonicera japonica HOM05D002081 ORTHO05D002088 8.0e-12 73.9 63 65.1
Nitab4.5_0005388g0090 Nicotiana tabacum HOM05D002081 ORTHO05D002088 8.0e-12 73.9 62 61.3
Nitab4.5_0008677g0010 Nicotiana tabacum HOM05D002081 ORTHO05D002088 8.0e-12 73.9 62 61.3
Sed0004716 Sechium edule HOM05D002081 ORTHO05D002088 8.0e-12 73.9 62 61.3
Lsat_1_v5_gn_3_98040 Lactuca sativa HOM05D002081 ORTHO05D002088 1.0e-11 73.6 62 62.9
MD04G1206000 Malus domestica HOM05D002081 ORTHO05D002088 1.0e-11 73.6 62 61.3
Solyc01g098900.3 Solanum lycopersicum HOM05D002081 ORTHO05D002088 1.0e-11 73.6 62 62.9
Sopen01g042440 Solanum pennellii HOM05D002081 ORTHO05D002088 1.0e-11 73.6 62 62.9
Cc02_g33510 Coffea canephora HOM05D002081 ORTHO05D002088 1.4e-11 73.2 62 62.9
Lj5A537T14 Lonicera japonica HOM05D002081 ORTHO05D002088 1.4e-11 73.2 65 60.0
VMungo0540G2070 Vigna mungo HOM05D002081 ORTHO05D002088 1.4e-11 73.2 61 62.3
CAN.G1077.16 Capsicum annuum HOM05D002081 ORTHO05D002088 1.8e-11 72.8 62 61.3
Os01g0610500 Oryza sativa ssp. japonica HOM05D002081 ORTHO05D002088 1.8e-11 72.8 61 59.0
Glyma.03G238400 Glycine max HOM05D002081 ORTHO05D002088 3.0e-11 72.0 61 62.3
HanXRQChr15g0473061 Helianthus annuus HOM05D002081 ORTHO05D002088 3.0e-11 72.0 62 61.3
Atru.chr2.413 Acer truncatum HOM05D002081 ORTHO05D002088 5.2e-11 71.2 61 54.1
Haze_01563 Corylus avellana HOM05D002081 ORTHO05D002088 5.2e-11 71.2 84 48.8
SGA_v2.0_scaffold37G14761 Striga asiatica HOM05D002081 ORTHO05D002088 5.2e-11 71.2 62 59.7
Mapoly0005s0055 Marchantia polymorpha HOM05D002081 ORTHO05D002088 1.2e-10 70.1 61 62.3
Zm00001eb161830 Zea mays HOM05D002081 ORTHO05D002088 3.4e-10 68.6 78 48.7
Zm00001eb358000 Zea mays HOM05D002081 ORTHO05D002088 3.4e-10 68.6 61 55.7
Phvul.007G180400 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 5.7e-10 67.8 64 60.9
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 7.5e-10 67.4 37 81.1
Glyma.19G235900 Glycine max HOM05D002081 ORTHO05D002088 7.5e-10 67.4 61 59.0
Lalb_Chr02g0148281 Lupinus albus HOM05D002081 ORTHO05D002088 1.3e-09 66.6 61 57.4
Glyma.10G154800 Glycine max HOM05D002081 ORTHO05D002088 1.7e-09 66.2 61 59.0
Nn2g14625 Nelumbo nucifera HOM05D000015 ORTHO05D275147 3.7e-09 65.1 57 63.2
SMO304G0127 Selaginella moellendorffii HOM05D002081 ORTHO05D002088 3.7e-09 65.1 57 54.4
Pp3c1_31750 Physcomitrium patens HOM05D002081 ORTHO05D002088 1.4e-08 63.2 60 58.3
Pp3c1_31760 Physcomitrium patens HOM05D002081 ORTHO05D002088 1.4e-08 63.2 60 58.3
AagrBONN_evm.TU.Sc2ySwM_344.4848 Anthoceros agrestis HOM05D002081 ORTHO05D002088 1.8e-08 62.8 60 53.3
AUR62031135 Chenopodium quinoa HOM05D002081 ORTHO05D002088 4.1e-08 61.6 40 67.5
Ca_09352_v3 Cicer arietinum L. HOM05D002081 ORTHO05D002088 1.6e-07 59.7 71 50.7
VMungo0720G2426 Vigna mungo HOM05D002081 ORTHO05D002088 2.7e-07 58.9 63 55.6
HanXRQChr14g0448761 Helianthus annuus HOM05D002081 ORTHO05D002088 5.9e-07 57.8 62 53.2
ECA238G2130 Erigeron canadensis HOM05D002081 ORTHO05D002088 1.0e-06 57.0 62 53.2


User provided reference genes

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