Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002081', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '320', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p22300' => 'bna', 'A03p34080' => 'bna', 'A04p30240' => 'bna', 'Aa31LG5G15750' => 'aar', 'Aa31LG5G19810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4848' => 'aag', 'Actinidia02912' => 'ach', 'Actinidia13182' => 'ach', 'Actinidia19793' => 'ach', 'Ah.06g189280' => 'amhyb', 'Ah.06g189290' => 'amhyb', 'AL3G15720' => 'aly', 'AL4G37350' => 'aly', 'AL6G39520' => 'aly', 'Aqoxy1G00829' => 'aox', 'Aqoxy5G00511' => 'aox', 'arahy.Tifrunner.gnm1.ann1.A3AWFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCQ45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXA9QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHE1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8JJXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YTA3II' => 'arhy', 'AT2G39805' => 'ath', 'AT3G05280' => 'ath', 'AT5G27490' => 'ath', 'ATR0559G126' => 'atr', 'ATR0706G136' => 'atr', 'Atru.chr12.302' => 'acertr', 'Atru.chr12.306' => 'acertr', 'Atru.chr12.307' => 'acertr', 'Atru.chr12.309' => 'acertr', 'Atru.chr12.338' => 'acertr', 'Atru.chr2.413' => 'acertr', 'AUR62012147' => 'cqu', 'AUR62031135' => 'cqu', 'AUR62036539' => 'cqu', 'AUR62040688' => 'cqu', 'BcaB01g03572' => 'bca', 'BcaB04g19273' => 'bca', 'BcaB04g19274' => 'bca', 'BcaB04g21452' => 'bca', 'BcaC01g05463' => 'bca', 'BcaC05g30016' => 'bca', 'BcaC05g30139' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00220' => 'bna', 'BolC1t05704H' => 'bol', 'BolC3t15026H' => 'bol', 'BolC3t16428H' => 'bol', 'BolC4t28261H' => 'bol', 'BolC5t34851H' => 'bol', 'BraA03t11462Z' => 'bra', 'BraA03t12582Z' => 'bra', 'BraA04t18484Z' => 'bra', 'BraA05t23021Z' => 'bra', 'BraSC132t45514Z' => 'bra', 'C03p26400' => 'bna', 'C03p41470' => 'bna', 'C04p67620' => 'bna', 'C05p61910' => 'bna', 'CAN.G1077.16' => 'can', 'CAN.G1184.5' => 'can', 'CANSAT54G1741' => 'cansat', 'CANSAT56G4043' => 'cansat', 'CANSAT64G2080' => 'cansat', 'CARHR079620' => 'chi', 'CARHR134690' => 'chi', 'Carub.0003s0453' => 'cru', 'Carub.0004s2191' => 'cru', 'Ca_05907_v3' => 'car', 'Ca_09351_v3' => 'car', 'Ca_09352_v3' => 'car', 'Ca_09360_v3' => 'car', 'Ca_09361_v3' => 'car', 'CBR_g1001' => 'cbr', 'CBR_g3522' => 'cbr', 'Cc02_g07330' => 'ccan', 'Cc02_g33510' => 'ccan', 'Cc05_g04230' => 'ccan', 'CDE03G0226' => 'cde', 'CDE04G1806' => 'cde', 'CDE07G0618' => 'cde', 'Cfa001415' => 'cfa', 'Cfa015110' => 'cfa', 'Cfa026924' => 'cfa', 'Ciclev10002100m.g' => 'ccl', 'Ciclev10032419m.g' => 'ccl', 'CiPaw.01G292200' => 'cil', 'CiPaw.02G187300' => 'cil', 'CiPaw.05G163100' => 'cil', 'ClCG03G016960' => 'cla', 'ClCG11G006590' => 'cla', 'COL.COLO4_13480' => 'col', 'COL.COLO4_25522' => 'col', 'Cpa.g.sc48.41' => 'cpa', 'Cpa.g.sc776.6' => 'cpa', 'Cre17.g722700' => 'cre', 'CsaV3_1G038980' => 'csa', 'CsaV3_6G001420' => 'csa', 'CSS0001800' => 'camsi', 'CSS0002569' => 'camsi', 'CSS0023450' => 'camsi', 'DCAR_022180' => 'dca', 'DCAR_024872' => 'dca', 'DCAR_027588' => 'dca', 'Dinv16263' => 'din', 'Dinv23946' => 'din', 'Dinv40279' => 'din', 'Duzib106G0506' => 'dzi', 'Duzib106G0565' => 'dzi', 'Duzib106G1433' => 'dzi', 'Duzib106G1630' => 'dzi', 'Duzib106G1704' => 'dzi', 'Duzib114G0689' => 'dzi', 'Duzib177G0896' => 'dzi', 'ECA233G1873' => 'eca', 'ECA238G2130' => 'eca', 'ECA246G2650' => 'eca', 'EL10Ac2g04688' => 'bvu', 'EL10Ac4g09344' => 'bvu', 'Eucgr.G02991' => 'egr', 'Eucgr.H04483' => 'egr', 'FAN01G0841' => 'fan', 'FAN02G1310' => 'fan', 'FAN03G2328' => 'fan', 'FAN05G1483' => 'fan', 'FAN05G4253' => 'fan', 'FAN06G3391' => 'fan', 'FAN06G4322' => 'fan', 'FAN09G0634' => 'fan', 'FAN10G0083' => 'fan', 'FAN14G1729' => 'fan', 'FAN14G5292' => 'fan', 'FvH4_6g05750' => 'fve', 'FvH4_7g23450' => 'fve', 'Glyma.02G251200' => 'gma', 'Glyma.03G238400' => 'gma', 'Glyma.10G154800' => 'gma', 'Glyma.14G065500' => 'gma', 'Glyma.19G235900' => 'gma', 'Glyma.20G233500' => 'gma', 'Gohir.A05G302300' => 'ghi', 'Gohir.A05G347300' => 'ghi', 'Gohir.A10G223500' => 'ghi', 'Gohir.A11G264400' => 'ghi', 'Gohir.A13G173700' => 'ghi', 'Gohir.D04G065000' => 'ghi', 'Gohir.D05G301800' => 'ghi', 'Gohir.D10G235900' => 'ghi', 'Gohir.D11G274600' => 'ghi', 'Gohir.D13G179400' => 'ghi', 'Gorai.007G296400' => 'gra', 'Gorai.009G319900' => 'gra', 'Gorai.011G269800' => 'gra', 'Gorai.012G073100' => 'gra', 'Gorai.013G204700' => 'gra', 'GSVIVG01000042001' => 'vvi', 'GSVIVG01016466001' => 'vvi', 'GSVIVG01023342001' => 'vvi', 'GSVIVG01036834001' => 'vvi', 'HanXRQChr08g0221211' => 'han', 'HanXRQChr14g0448761' => 'han', 'HanXRQChr15g0473061' => 'han', 'Haze_01563' => 'cav', 'Haze_17129' => 'cav', 'Hma1.2p1_0033F.1_g020140' => 'hma', 'Hma1.2p1_0039F.1_g024690' => 'hma', 'HPP92_003399' => 'vpl', 'HPP92_003418' => 'vpl', 'HPP92_006343' => 'vpl', 'HPP92_024134' => 'vpl', 'Hund07065' => 'sun', 'Hund13800' => 'sun', 'Hund16051' => 'sun', 'Hund21242' => 'sun', 'Lalb_Chr02g0148281' => 'lal', 'Lalb_Chr10g0104771' => 'lal', 'Lalb_Chr18g0045591' => 'lal', 'Lj1g0010880' => 'lja', 'Lj1g0022131' => 'lja', 'Lj5A537T14' => 'lonja', 'Lj5C537T3' => 'lonja', 'Lj8C78T3' => 'lonja', 'Lj9C31T1' => 'lonja', 'LjContig00141g0016830' => 'lja', 'Lsat_1_v5_gn_2_87721' => 'lsa', 'Lsat_1_v5_gn_3_98040' => 'lsa', 'Lsat_1_v5_gn_5_136000' => 'lsa', 'Lsat_1_v5_gn_8_14680' => 'lsa', 'Manes.07G120704' => 'mes', 'Manes.08G121400' => 'mes', 'Manes.09G166400' => 'mes', 'Manes.10G024700' => 'mes', 'Mapoly0005s0055' => 'mpo', 'MBI14_g09011_MAGBIO' => 'mbi', 'MBI17_g13558_MAGBIO' => 'mbi', 'MCO12G418' => 'mco', 'MD01G1140300' => 'mdo', 'MD04G1206000' => 'mdo', 'MD07G1204600' => 'mdo', 'MD12G1220100' => 'mdo', 'Medtr3g069150' => 'mtr', 'Medtr3g069170' => 'mtr', 'Medtr5g081040' => 'mtr', 'Medtr7g113620' => 'mtr', 'MELO3C008246.2' => 'cme', 'MELO3C015325.2' => 'cme', 'Migut.F01287' => 'egut', 'Migut.I00760' => 'egut', 'MSTRG.22749' => 'ama', 'MSTRG.261' => 'ama', 'MSTRG.8286' => 'ama', 'Nitab4.5_0000987g0040' => 'nta', 'Nitab4.5_0005388g0090' => 'nta', 'Nitab4.5_0008497g0010' => 'nta', 'Nitab4.5_0008497g0020' => 'nta', 'Nitab4.5_0008677g0010' => 'nta', 'Nn1g02215' => 'nnu', 'Nn2g11249' => 'nnu', 'Nn2g13497' => 'nnu', 'Nn3g20336' => 'nnu', 'Nn4g26240' => 'nnu', 'Oeu001519.1' => 'oeu', 'Oeu029692.2' => 'oeu', 'Os01g0610500' => 'osa', 'Os05g0455800' => 'osa', 'Peaxi162Scf00037g00230' => 'pax', 'Peaxi162Scf00164g01416' => 'pax', 'Peaxi162Scf00658g00313' => 'pax', 'PGR031G0270' => 'pgr', 'PGR083G2895' => 'pgr', 'PGR142G4126' => 'pgr', 'PGSC0003DMG400027135' => 'stu', 'PGSC0003DMG400028610' => 'stu', 'Phvul.001G237000' => 'pvu', 'Phvul.006G092500' => 'pvu', 'Phvul.007G180400' => 'pvu', 'Phvul.008G230200' => 'pvu', 'Potri.005G033900' => 'ptr', 'Potri.008G060300' => 'ptr', 'Potri.010G198100' => 'ptr', 'Potri.010G198300' => 'ptr', 'Potri.013G023400' => 'ptr', 'Pp3c1_31750' => 'ppa', 'Pp3c1_31760' => 'ppa', 'Pp3c4_14200' => 'ppa', 'PRCOL_00001434' => 'pco', 'Prupe.2G240900' => 'ppe', 'Prupe.6G326800' => 'ppe', 'Psat2g038920' => 'psa', 'Psat3g010720' => 'psa', 'Psat5g128720' => 'psa', 'PSO017G1346' => 'pso', 'PSO063G5958' => 'pso', 'PSO339G3649' => 'pso', 'PSO384G4711' => 'pso', 'QL03p041970' => 'qlo', 'QL08p061675' => 'qlo', 'RcHm_v2.0_Chr1g0368591' => 'rch', 'RcHm_v2.0_Chr3g0454661' => 'rch', 'Rhsim03G0136700' => 'rsi', 'Rhsim05G0142500' => 'rsi', 'Rhsim09G0168000' => 'rsi', 'Rhsim09G0168900' => 'rsi', 'Sabra05G0035900' => 'sbr', 'Sabra08G0044400' => 'sbr', 'Sabra10G0152600' => 'sbr', 'SalBow2G0074' => 'sbo', 'SalBow6G3204' => 'sbo', 'SalBow6G3476' => 'sbo', 'Sc09g0003210' => 'sci', 'Sc10g0001880' => 'sci', 'Sed0003628' => 'sed', 'Sed0004716' => 'sed', 'Sed0012888' => 'sed', 'SEGI_37536' => 'sgi', 'SEGI_40211' => 'sgi', 'SEGI_41301' => 'sgi', 'SGA_v2.0_scaffold2G00987' => 'sas', 'SGA_v2.0_scaffold37G14761' => 'sas', 'SHI03706' => 'shi', 'SMO304G0127' => 'smo', 'Solyc01g098900.3' => 'sly', 'Solyc05g052930.3' => 'sly', 'Sopen01g042440' => 'spe', 'Sopen05g031450' => 'spe', 'Sp2g20700' => 'spa', 'Sp3g04130' => 'spa', 'Sp4g22090' => 'spa', 'TAR362G0444' => 'tar', 'TAR365G0117' => 'tar', 'TAR633G0599' => 'tar', 'TAR633G1303' => 'tar', 'TAR636G1215' => 'tar', 'TAR636G1286' => 'tar', 'THA.LOC104802804' => 'tha', 'THA.LOC104808815' => 'tha', 'Thecc.05G304600' => 'tca', 'Thecc.10G034500' => 'tca', 'Thhalv10004745m.g' => 'esa', 'Thhalv10017061m.g' => 'esa', 'Thhalv10021283m.g' => 'esa', 'TPR.G10328' => 'tpr', 'TPR.G25857' => 'tpr', 'TPR.G33220' => 'tpr', 'TWI12G1165' => 'twi', 'TWI15G0806' => 'twi', 'TWI38G1695' => 'twi', 'TWI56G1185' => 'twi', 'unitig_0.g1112' => 'ugi', 'unitig_27.g25068' => 'ugi', 'vmacro07036' => 'vma', 'vmacro10211' => 'vma', 'vmacro19628' => 'vma', 'VMungo0540G2070' => 'vmu', 'VMungo0647G2156' => 'vmu', 'VMungo0720G2426' => 'vmu', 'VMungo1383G3669' => 'vmu', 'Zm00001eb161830' => 'zma', 'Zm00001eb289530' => 'zma', 'Zm00001eb358000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002081', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002081' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002081', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '320', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002081' ) ), 'genes' => array( 'A03p22300' => 'bna', 'A03p34080' => 'bna', 'A04p30240' => 'bna', 'Aa31LG5G15750' => 'aar', 'Aa31LG5G19810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4848' => 'aag', 'Actinidia02912' => 'ach', 'Actinidia13182' => 'ach', 'Actinidia19793' => 'ach', 'Ah.06g189280' => 'amhyb', 'Ah.06g189290' => 'amhyb', 'AL3G15720' => 'aly', 'AL4G37350' => 'aly', 'AL6G39520' => 'aly', 'Aqoxy1G00829' => 'aox', 'Aqoxy5G00511' => 'aox', 'arahy.Tifrunner.gnm1.ann1.A3AWFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCQ45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXA9QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHE1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8JJXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YTA3II' => 'arhy', 'AT2G39805' => 'ath', 'AT3G05280' => 'ath', 'AT5G27490' => 'ath', 'ATR0559G126' => 'atr', 'ATR0706G136' => 'atr', 'Atru.chr12.302' => 'acertr', 'Atru.chr12.306' => 'acertr', 'Atru.chr12.307' => 'acertr', 'Atru.chr12.309' => 'acertr', 'Atru.chr12.338' => 'acertr', 'Atru.chr2.413' => 'acertr', 'AUR62012147' => 'cqu', 'AUR62031135' => 'cqu', 'AUR62036539' => 'cqu', 'AUR62040688' => 'cqu', 'BcaB01g03572' => 'bca', 'BcaB04g19273' => 'bca', 'BcaB04g19274' => 'bca', 'BcaB04g21452' => 'bca', 'BcaC01g05463' => 'bca', 'BcaC05g30016' => 'bca', 'BcaC05g30139' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00220' => 'bna', 'BolC1t05704H' => 'bol', 'BolC3t15026H' => 'bol', 'BolC3t16428H' => 'bol', 'BolC4t28261H' => 'bol', 'BolC5t34851H' => 'bol', 'BraA03t11462Z' => 'bra', 'BraA03t12582Z' => 'bra', 'BraA04t18484Z' => 'bra', 'BraA05t23021Z' => 'bra', 'BraSC132t45514Z' => 'bra', 'C03p26400' => 'bna', 'C03p41470' => 'bna', 'C04p67620' => 'bna', 'C05p61910' => 'bna', 'CAN.G1077.16' => 'can', 'CAN.G1184.5' => 'can', 'CANSAT54G1741' => 'cansat', 'CANSAT56G4043' => 'cansat', 'CANSAT64G2080' => 'cansat', 'CARHR079620' => 'chi', 'CARHR134690' => 'chi', 'Carub.0003s0453' => 'cru', 'Carub.0004s2191' => 'cru', 'Ca_05907_v3' => 'car', 'Ca_09351_v3' => 'car', 'Ca_09352_v3' => 'car', 'Ca_09360_v3' => 'car', 'Ca_09361_v3' => 'car', 'CBR_g1001' => 'cbr', 'CBR_g3522' => 'cbr', 'Cc02_g07330' => 'ccan', 'Cc02_g33510' => 'ccan', 'Cc05_g04230' => 'ccan', 'CDE03G0226' => 'cde', 'CDE04G1806' => 'cde', 'CDE07G0618' => 'cde', 'Cfa001415' => 'cfa', 'Cfa015110' => 'cfa', 'Cfa026924' => 'cfa', 'Ciclev10002100m.g' => 'ccl', 'Ciclev10032419m.g' => 'ccl', 'CiPaw.01G292200' => 'cil', 'CiPaw.02G187300' => 'cil', 'CiPaw.05G163100' => 'cil', 'ClCG03G016960' => 'cla', 'ClCG11G006590' => 'cla', 'COL.COLO4_13480' => 'col', 'COL.COLO4_25522' => 'col', 'Cpa.g.sc48.41' => 'cpa', 'Cpa.g.sc776.6' => 'cpa', 'Cre17.g722700' => 'cre', 'CsaV3_1G038980' => 'csa', 'CsaV3_6G001420' => 'csa', 'CSS0001800' => 'camsi', 'CSS0002569' => 'camsi', 'CSS0023450' => 'camsi', 'DCAR_022180' => 'dca', 'DCAR_024872' => 'dca', 'DCAR_027588' => 'dca', 'Dinv16263' => 'din', 'Dinv23946' => 'din', 'Dinv40279' => 'din', 'Duzib106G0506' => 'dzi', 'Duzib106G0565' => 'dzi', 'Duzib106G1433' => 'dzi', 'Duzib106G1630' => 'dzi', 'Duzib106G1704' => 'dzi', 'Duzib114G0689' => 'dzi', 'Duzib177G0896' => 'dzi', 'ECA233G1873' => 'eca', 'ECA238G2130' => 'eca', 'ECA246G2650' => 'eca', 'EL10Ac2g04688' => 'bvu', 'EL10Ac4g09344' => 'bvu', 'Eucgr.G02991' => 'egr', 'Eucgr.H04483' => 'egr', 'FAN01G0841' => 'fan', 'FAN02G1310' => 'fan', 'FAN03G2328' => 'fan', 'FAN05G1483' => 'fan', 'FAN05G4253' => 'fan', 'FAN06G3391' => 'fan', 'FAN06G4322' => 'fan', 'FAN09G0634' => 'fan', 'FAN10G0083' => 'fan', 'FAN14G1729' => 'fan', 'FAN14G5292' => 'fan', 'FvH4_6g05750' => 'fve', 'FvH4_7g23450' => 'fve', 'Glyma.02G251200' => 'gma', 'Glyma.03G238400' => 'gma', 'Glyma.10G154800' => 'gma', 'Glyma.14G065500' => 'gma', 'Glyma.19G235900' => 'gma', 'Glyma.20G233500' => 'gma', 'Gohir.A05G302300' => 'ghi', 'Gohir.A05G347300' => 'ghi', 'Gohir.A10G223500' => 'ghi', 'Gohir.A11G264400' => 'ghi', 'Gohir.A13G173700' => 'ghi', 'Gohir.D04G065000' => 'ghi', 'Gohir.D05G301800' => 'ghi', 'Gohir.D10G235900' => 'ghi', 'Gohir.D11G274600' => 'ghi', 'Gohir.D13G179400' => 'ghi', 'Gorai.007G296400' => 'gra', 'Gorai.009G319900' => 'gra', 'Gorai.011G269800' => 'gra', 'Gorai.012G073100' => 'gra', 'Gorai.013G204700' => 'gra', 'GSVIVG01000042001' => 'vvi', 'GSVIVG01016466001' => 'vvi', 'GSVIVG01023342001' => 'vvi', 'GSVIVG01036834001' => 'vvi', 'HanXRQChr08g0221211' => 'han', 'HanXRQChr14g0448761' => 'han', 'HanXRQChr15g0473061' => 'han', 'Haze_01563' => 'cav', 'Haze_17129' => 'cav', 'Hma1.2p1_0033F.1_g020140' => 'hma', 'Hma1.2p1_0039F.1_g024690' => 'hma', 'HPP92_003399' => 'vpl', 'HPP92_003418' => 'vpl', 'HPP92_006343' => 'vpl', 'HPP92_024134' => 'vpl', 'Hund07065' => 'sun', 'Hund13800' => 'sun', 'Hund16051' => 'sun', 'Hund21242' => 'sun', 'Lalb_Chr02g0148281' => 'lal', 'Lalb_Chr10g0104771' => 'lal', 'Lalb_Chr18g0045591' => 'lal', 'Lj1g0010880' => 'lja', 'Lj1g0022131' => 'lja', 'Lj5A537T14' => 'lonja', 'Lj5C537T3' => 'lonja', 'Lj8C78T3' => 'lonja', 'Lj9C31T1' => 'lonja', 'LjContig00141g0016830' => 'lja', 'Lsat_1_v5_gn_2_87721' => 'lsa', 'Lsat_1_v5_gn_3_98040' => 'lsa', 'Lsat_1_v5_gn_5_136000' => 'lsa', 'Lsat_1_v5_gn_8_14680' => 'lsa', 'Manes.07G120704' => 'mes', 'Manes.08G121400' => 'mes', 'Manes.09G166400' => 'mes', 'Manes.10G024700' => 'mes', 'Mapoly0005s0055' => 'mpo', 'MBI14_g09011_MAGBIO' => 'mbi', 'MBI17_g13558_MAGBIO' => 'mbi', 'MCO12G418' => 'mco', 'MD01G1140300' => 'mdo', 'MD04G1206000' => 'mdo', 'MD07G1204600' => 'mdo', 'MD12G1220100' => 'mdo', 'Medtr3g069150' => 'mtr', 'Medtr3g069170' => 'mtr', 'Medtr5g081040' => 'mtr', 'Medtr7g113620' => 'mtr', 'MELO3C008246.2' => 'cme', 'MELO3C015325.2' => 'cme', 'Migut.F01287' => 'egut', 'Migut.I00760' => 'egut', 'MSTRG.22749' => 'ama', 'MSTRG.261' => 'ama', 'MSTRG.8286' => 'ama', 'Nitab4.5_0000987g0040' => 'nta', 'Nitab4.5_0005388g0090' => 'nta', 'Nitab4.5_0008497g0010' => 'nta', 'Nitab4.5_0008497g0020' => 'nta', 'Nitab4.5_0008677g0010' => 'nta', 'Nn1g02215' => 'nnu', 'Nn2g11249' => 'nnu', 'Nn2g13497' => 'nnu', 'Nn3g20336' => 'nnu', 'Nn4g26240' => 'nnu', 'Oeu001519.1' => 'oeu', 'Oeu029692.2' => 'oeu', 'Os01g0610500' => 'osa', 'Os05g0455800' => 'osa', 'Peaxi162Scf00037g00230' => 'pax', 'Peaxi162Scf00164g01416' => 'pax', 'Peaxi162Scf00658g00313' => 'pax', 'PGR031G0270' => 'pgr', 'PGR083G2895' => 'pgr', 'PGR142G4126' => 'pgr', 'PGSC0003DMG400027135' => 'stu', 'PGSC0003DMG400028610' => 'stu', 'Phvul.001G237000' => 'pvu', 'Phvul.006G092500' => 'pvu', 'Phvul.007G180400' => 'pvu', 'Phvul.008G230200' => 'pvu', 'Potri.005G033900' => 'ptr', 'Potri.008G060300' => 'ptr', 'Potri.010G198100' => 'ptr', 'Potri.010G198300' => 'ptr', 'Potri.013G023400' => 'ptr', 'Pp3c1_31750' => 'ppa', 'Pp3c1_31760' => 'ppa', 'Pp3c4_14200' => 'ppa', 'PRCOL_00001434' => 'pco', 'Prupe.2G240900' => 'ppe', 'Prupe.6G326800' => 'ppe', 'Psat2g038920' => 'psa', 'Psat3g010720' => 'psa', 'Psat5g128720' => 'psa', 'PSO017G1346' => 'pso', 'PSO063G5958' => 'pso', 'PSO339G3649' => 'pso', 'PSO384G4711' => 'pso', 'QL03p041970' => 'qlo', 'QL08p061675' => 'qlo', 'RcHm_v2.0_Chr1g0368591' => 'rch', 'RcHm_v2.0_Chr3g0454661' => 'rch', 'Rhsim03G0136700' => 'rsi', 'Rhsim05G0142500' => 'rsi', 'Rhsim09G0168000' => 'rsi', 'Rhsim09G0168900' => 'rsi', 'Sabra05G0035900' => 'sbr', 'Sabra08G0044400' => 'sbr', 'Sabra10G0152600' => 'sbr', 'SalBow2G0074' => 'sbo', 'SalBow6G3204' => 'sbo', 'SalBow6G3476' => 'sbo', 'Sc09g0003210' => 'sci', 'Sc10g0001880' => 'sci', 'Sed0003628' => 'sed', 'Sed0004716' => 'sed', 'Sed0012888' => 'sed', 'SEGI_37536' => 'sgi', 'SEGI_40211' => 'sgi', 'SEGI_41301' => 'sgi', 'SGA_v2.0_scaffold2G00987' => 'sas', 'SGA_v2.0_scaffold37G14761' => 'sas', 'SHI03706' => 'shi', 'SMO304G0127' => 'smo', 'Solyc01g098900.3' => 'sly', 'Solyc05g052930.3' => 'sly', 'Sopen01g042440' => 'spe', 'Sopen05g031450' => 'spe', 'Sp2g20700' => 'spa', 'Sp3g04130' => 'spa', 'Sp4g22090' => 'spa', 'TAR362G0444' => 'tar', 'TAR365G0117' => 'tar', 'TAR633G0599' => 'tar', 'TAR633G1303' => 'tar', 'TAR636G1215' => 'tar', 'TAR636G1286' => 'tar', 'THA.LOC104802804' => 'tha', 'THA.LOC104808815' => 'tha', 'Thecc.05G304600' => 'tca', 'Thecc.10G034500' => 'tca', 'Thhalv10004745m.g' => 'esa', 'Thhalv10017061m.g' => 'esa', 'Thhalv10021283m.g' => 'esa', 'TPR.G10328' => 'tpr', 'TPR.G25857' => 'tpr', 'TPR.G33220' => 'tpr', 'TWI12G1165' => 'twi', 'TWI15G0806' => 'twi', 'TWI38G1695' => 'twi', 'TWI56G1185' => 'twi', 'unitig_0.g1112' => 'ugi', 'unitig_27.g25068' => 'ugi', 'vmacro07036' => 'vma', 'vmacro10211' => 'vma', 'vmacro19628' => 'vma', 'VMungo0540G2070' => 'vmu', 'VMungo0647G2156' => 'vmu', 'VMungo0720G2426' => 'vmu', 'VMungo1383G3669' => 'vmu', 'Zm00001eb161830' => 'zma', 'Zm00001eb289530' => 'zma', 'Zm00001eb358000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002081' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002081' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002081' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002081' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002081', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '320', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p22300' => 'bna', 'A03p34080' => 'bna', 'A04p30240' => 'bna', 'Aa31LG5G15750' => 'aar', 'Aa31LG5G19810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4848' => 'aag', 'Actinidia02912' => 'ach', 'Actinidia13182' => 'ach', 'Actinidia19793' => 'ach', 'Ah.06g189280' => 'amhyb', 'Ah.06g189290' => 'amhyb', 'AL3G15720' => 'aly', 'AL4G37350' => 'aly', 'AL6G39520' => 'aly', 'Aqoxy1G00829' => 'aox', 'Aqoxy5G00511' => 'aox', 'arahy.Tifrunner.gnm1.ann1.A3AWFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCQ45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXA9QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHE1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8JJXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YTA3II' => 'arhy', 'AT2G39805' => 'ath', 'AT3G05280' => 'ath', 'AT5G27490' => 'ath', 'ATR0559G126' => 'atr', 'ATR0706G136' => 'atr', 'Atru.chr12.302' => 'acertr', 'Atru.chr12.306' => 'acertr', 'Atru.chr12.307' => 'acertr', 'Atru.chr12.309' => 'acertr', 'Atru.chr12.338' => 'acertr', 'Atru.chr2.413' => 'acertr', 'AUR62012147' => 'cqu', 'AUR62031135' => 'cqu', 'AUR62036539' => 'cqu', 'AUR62040688' => 'cqu', 'BcaB01g03572' => 'bca', 'BcaB04g19273' => 'bca', 'BcaB04g19274' => 'bca', 'BcaB04g21452' => 'bca', 'BcaC01g05463' => 'bca', 'BcaC05g30016' => 'bca', 'BcaC05g30139' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00220' => 'bna', 'BolC1t05704H' => 'bol', 'BolC3t15026H' => 'bol', 'BolC3t16428H' => 'bol', 'BolC4t28261H' => 'bol', 'BolC5t34851H' => 'bol', 'BraA03t11462Z' => 'bra', 'BraA03t12582Z' => 'bra', 'BraA04t18484Z' => 'bra', 'BraA05t23021Z' => 'bra', 'BraSC132t45514Z' => 'bra', 'C03p26400' => 'bna', 'C03p41470' => 'bna', 'C04p67620' => 'bna', 'C05p61910' => 'bna', 'CAN.G1077.16' => 'can', 'CAN.G1184.5' => 'can', 'CANSAT54G1741' => 'cansat', 'CANSAT56G4043' => 'cansat', 'CANSAT64G2080' => 'cansat', 'CARHR079620' => 'chi', 'CARHR134690' => 'chi', 'Carub.0003s0453' => 'cru', 'Carub.0004s2191' => 'cru', 'Ca_05907_v3' => 'car', 'Ca_09351_v3' => 'car', 'Ca_09352_v3' => 'car', 'Ca_09360_v3' => 'car', 'Ca_09361_v3' => 'car', 'CBR_g1001' => 'cbr', 'CBR_g3522' => 'cbr', 'Cc02_g07330' => 'ccan', 'Cc02_g33510' => 'ccan', 'Cc05_g04230' => 'ccan', 'CDE03G0226' => 'cde', 'CDE04G1806' => 'cde', 'CDE07G0618' => 'cde', 'Cfa001415' => 'cfa', 'Cfa015110' => 'cfa', 'Cfa026924' => 'cfa', 'Ciclev10002100m.g' => 'ccl', 'Ciclev10032419m.g' => 'ccl', 'CiPaw.01G292200' => 'cil', 'CiPaw.02G187300' => 'cil', 'CiPaw.05G163100' => 'cil', 'ClCG03G016960' => 'cla', 'ClCG11G006590' => 'cla', 'COL.COLO4_13480' => 'col', 'COL.COLO4_25522' => 'col', 'Cpa.g.sc48.41' => 'cpa', 'Cpa.g.sc776.6' => 'cpa', 'Cre17.g722700' => 'cre', 'CsaV3_1G038980' => 'csa', 'CsaV3_6G001420' => 'csa', 'CSS0001800' => 'camsi', 'CSS0002569' => 'camsi', 'CSS0023450' => 'camsi', 'DCAR_022180' => 'dca', 'DCAR_024872' => 'dca', 'DCAR_027588' => 'dca', 'Dinv16263' => 'din', 'Dinv23946' => 'din', 'Dinv40279' => 'din', 'Duzib106G0506' => 'dzi', 'Duzib106G0565' => 'dzi', 'Duzib106G1433' => 'dzi', 'Duzib106G1630' => 'dzi', 'Duzib106G1704' => 'dzi', 'Duzib114G0689' => 'dzi', 'Duzib177G0896' => 'dzi', 'ECA233G1873' => 'eca', 'ECA238G2130' => 'eca', 'ECA246G2650' => 'eca', 'EL10Ac2g04688' => 'bvu', 'EL10Ac4g09344' => 'bvu', 'Eucgr.G02991' => 'egr', 'Eucgr.H04483' => 'egr', 'FAN01G0841' => 'fan', 'FAN02G1310' => 'fan', 'FAN03G2328' => 'fan', 'FAN05G1483' => 'fan', 'FAN05G4253' => 'fan', 'FAN06G3391' => 'fan', 'FAN06G4322' => 'fan', 'FAN09G0634' => 'fan', 'FAN10G0083' => 'fan', 'FAN14G1729' => 'fan', 'FAN14G5292' => 'fan', 'FvH4_6g05750' => 'fve', 'FvH4_7g23450' => 'fve', 'Glyma.02G251200' => 'gma', 'Glyma.03G238400' => 'gma', 'Glyma.10G154800' => 'gma', 'Glyma.14G065500' => 'gma', 'Glyma.19G235900' => 'gma', 'Glyma.20G233500' => 'gma', 'Gohir.A05G302300' => 'ghi', 'Gohir.A05G347300' => 'ghi', 'Gohir.A10G223500' => 'ghi', 'Gohir.A11G264400' => 'ghi', 'Gohir.A13G173700' => 'ghi', 'Gohir.D04G065000' => 'ghi', 'Gohir.D05G301800' => 'ghi', 'Gohir.D10G235900' => 'ghi', 'Gohir.D11G274600' => 'ghi', 'Gohir.D13G179400' => 'ghi', 'Gorai.007G296400' => 'gra', 'Gorai.009G319900' => 'gra', 'Gorai.011G269800' => 'gra', 'Gorai.012G073100' => 'gra', 'Gorai.013G204700' => 'gra', 'GSVIVG01000042001' => 'vvi', 'GSVIVG01016466001' => 'vvi', 'GSVIVG01023342001' => 'vvi', 'GSVIVG01036834001' => 'vvi', 'HanXRQChr08g0221211' => 'han', 'HanXRQChr14g0448761' => 'han', 'HanXRQChr15g0473061' => 'han', 'Haze_01563' => 'cav', 'Haze_17129' => 'cav', 'Hma1.2p1_0033F.1_g020140' => 'hma', 'Hma1.2p1_0039F.1_g024690' => 'hma', 'HPP92_003399' => 'vpl', 'HPP92_003418' => 'vpl', 'HPP92_006343' => 'vpl', 'HPP92_024134' => 'vpl', 'Hund07065' => 'sun', 'Hund13800' => 'sun', 'Hund16051' => 'sun', 'Hund21242' => 'sun', 'Lalb_Chr02g0148281' => 'lal', 'Lalb_Chr10g0104771' => 'lal', 'Lalb_Chr18g0045591' => 'lal', 'Lj1g0010880' => 'lja', 'Lj1g0022131' => 'lja', 'Lj5A537T14' => 'lonja', 'Lj5C537T3' => 'lonja', 'Lj8C78T3' => 'lonja', 'Lj9C31T1' => 'lonja', 'LjContig00141g0016830' => 'lja', 'Lsat_1_v5_gn_2_87721' => 'lsa', 'Lsat_1_v5_gn_3_98040' => 'lsa', 'Lsat_1_v5_gn_5_136000' => 'lsa', 'Lsat_1_v5_gn_8_14680' => 'lsa', 'Manes.07G120704' => 'mes', 'Manes.08G121400' => 'mes', 'Manes.09G166400' => 'mes', 'Manes.10G024700' => 'mes', 'Mapoly0005s0055' => 'mpo', 'MBI14_g09011_MAGBIO' => 'mbi', 'MBI17_g13558_MAGBIO' => 'mbi', 'MCO12G418' => 'mco', 'MD01G1140300' => 'mdo', 'MD04G1206000' => 'mdo', 'MD07G1204600' => 'mdo', 'MD12G1220100' => 'mdo', 'Medtr3g069150' => 'mtr', 'Medtr3g069170' => 'mtr', 'Medtr5g081040' => 'mtr', 'Medtr7g113620' => 'mtr', 'MELO3C008246.2' => 'cme', 'MELO3C015325.2' => 'cme', 'Migut.F01287' => 'egut', 'Migut.I00760' => 'egut', 'MSTRG.22749' => 'ama', 'MSTRG.261' => 'ama', 'MSTRG.8286' => 'ama', 'Nitab4.5_0000987g0040' => 'nta', 'Nitab4.5_0005388g0090' => 'nta', 'Nitab4.5_0008497g0010' => 'nta', 'Nitab4.5_0008497g0020' => 'nta', 'Nitab4.5_0008677g0010' => 'nta', 'Nn1g02215' => 'nnu', 'Nn2g11249' => 'nnu', 'Nn2g13497' => 'nnu', 'Nn3g20336' => 'nnu', 'Nn4g26240' => 'nnu', 'Oeu001519.1' => 'oeu', 'Oeu029692.2' => 'oeu', 'Os01g0610500' => 'osa', 'Os05g0455800' => 'osa', 'Peaxi162Scf00037g00230' => 'pax', 'Peaxi162Scf00164g01416' => 'pax', 'Peaxi162Scf00658g00313' => 'pax', 'PGR031G0270' => 'pgr', 'PGR083G2895' => 'pgr', 'PGR142G4126' => 'pgr', 'PGSC0003DMG400027135' => 'stu', 'PGSC0003DMG400028610' => 'stu', 'Phvul.001G237000' => 'pvu', 'Phvul.006G092500' => 'pvu', 'Phvul.007G180400' => 'pvu', 'Phvul.008G230200' => 'pvu', 'Potri.005G033900' => 'ptr', 'Potri.008G060300' => 'ptr', 'Potri.010G198100' => 'ptr', 'Potri.010G198300' => 'ptr', 'Potri.013G023400' => 'ptr', 'Pp3c1_31750' => 'ppa', 'Pp3c1_31760' => 'ppa', 'Pp3c4_14200' => 'ppa', 'PRCOL_00001434' => 'pco', 'Prupe.2G240900' => 'ppe', 'Prupe.6G326800' => 'ppe', 'Psat2g038920' => 'psa', 'Psat3g010720' => 'psa', 'Psat5g128720' => 'psa', 'PSO017G1346' => 'pso', 'PSO063G5958' => 'pso', 'PSO339G3649' => 'pso', 'PSO384G4711' => 'pso', 'QL03p041970' => 'qlo', 'QL08p061675' => 'qlo', 'RcHm_v2.0_Chr1g0368591' => 'rch', 'RcHm_v2.0_Chr3g0454661' => 'rch', 'Rhsim03G0136700' => 'rsi', 'Rhsim05G0142500' => 'rsi', 'Rhsim09G0168000' => 'rsi', 'Rhsim09G0168900' => 'rsi', 'Sabra05G0035900' => 'sbr', 'Sabra08G0044400' => 'sbr', 'Sabra10G0152600' => 'sbr', 'SalBow2G0074' => 'sbo', 'SalBow6G3204' => 'sbo', 'SalBow6G3476' => 'sbo', 'Sc09g0003210' => 'sci', 'Sc10g0001880' => 'sci', 'Sed0003628' => 'sed', 'Sed0004716' => 'sed', 'Sed0012888' => 'sed', 'SEGI_37536' => 'sgi', 'SEGI_40211' => 'sgi', 'SEGI_41301' => 'sgi', 'SGA_v2.0_scaffold2G00987' => 'sas', 'SGA_v2.0_scaffold37G14761' => 'sas', 'SHI03706' => 'shi', 'SMO304G0127' => 'smo', 'Solyc01g098900.3' => 'sly', 'Solyc05g052930.3' => 'sly', 'Sopen01g042440' => 'spe', 'Sopen05g031450' => 'spe', 'Sp2g20700' => 'spa', 'Sp3g04130' => 'spa', 'Sp4g22090' => 'spa', 'TAR362G0444' => 'tar', 'TAR365G0117' => 'tar', 'TAR633G0599' => 'tar', 'TAR633G1303' => 'tar', 'TAR636G1215' => 'tar', 'TAR636G1286' => 'tar', 'THA.LOC104802804' => 'tha', 'THA.LOC104808815' => 'tha', 'Thecc.05G304600' => 'tca', 'Thecc.10G034500' => 'tca', 'Thhalv10004745m.g' => 'esa', 'Thhalv10017061m.g' => 'esa', 'Thhalv10021283m.g' => 'esa', 'TPR.G10328' => 'tpr', 'TPR.G25857' => 'tpr', 'TPR.G33220' => 'tpr', 'TWI12G1165' => 'twi', 'TWI15G0806' => 'twi', 'TWI38G1695' => 'twi', 'TWI56G1185' => 'twi', 'unitig_0.g1112' => 'ugi', 'unitig_27.g25068' => 'ugi', 'vmacro07036' => 'vma', 'vmacro10211' => 'vma', 'vmacro19628' => 'vma', 'VMungo0540G2070' => 'vmu', 'VMungo0647G2156' => 'vmu', 'VMungo0720G2426' => 'vmu', 'VMungo1383G3669' => 'vmu', 'Zm00001eb161830' => 'zma', 'Zm00001eb289530' => 'zma', 'Zm00001eb358000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002081', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002081' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002081', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '320', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002081' ) ), 'genes' => array( 'A03p22300' => 'bna', 'A03p34080' => 'bna', 'A04p30240' => 'bna', 'Aa31LG5G15750' => 'aar', 'Aa31LG5G19810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4848' => 'aag', 'Actinidia02912' => 'ach', 'Actinidia13182' => 'ach', 'Actinidia19793' => 'ach', 'Ah.06g189280' => 'amhyb', 'Ah.06g189290' => 'amhyb', 'AL3G15720' => 'aly', 'AL4G37350' => 'aly', 'AL6G39520' => 'aly', 'Aqoxy1G00829' => 'aox', 'Aqoxy5G00511' => 'aox', 'arahy.Tifrunner.gnm1.ann1.A3AWFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCQ45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXA9QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHE1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8JJXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YTA3II' => 'arhy', 'AT2G39805' => 'ath', 'AT3G05280' => 'ath', 'AT5G27490' => 'ath', 'ATR0559G126' => 'atr', 'ATR0706G136' => 'atr', 'Atru.chr12.302' => 'acertr', 'Atru.chr12.306' => 'acertr', 'Atru.chr12.307' => 'acertr', 'Atru.chr12.309' => 'acertr', 'Atru.chr12.338' => 'acertr', 'Atru.chr2.413' => 'acertr', 'AUR62012147' => 'cqu', 'AUR62031135' => 'cqu', 'AUR62036539' => 'cqu', 'AUR62040688' => 'cqu', 'BcaB01g03572' => 'bca', 'BcaB04g19273' => 'bca', 'BcaB04g19274' => 'bca', 'BcaB04g21452' => 'bca', 'BcaC01g05463' => 'bca', 'BcaC05g30016' => 'bca', 'BcaC05g30139' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00220' => 'bna', 'BolC1t05704H' => 'bol', 'BolC3t15026H' => 'bol', 'BolC3t16428H' => 'bol', 'BolC4t28261H' => 'bol', 'BolC5t34851H' => 'bol', 'BraA03t11462Z' => 'bra', 'BraA03t12582Z' => 'bra', 'BraA04t18484Z' => 'bra', 'BraA05t23021Z' => 'bra', 'BraSC132t45514Z' => 'bra', 'C03p26400' => 'bna', 'C03p41470' => 'bna', 'C04p67620' => 'bna', 'C05p61910' => 'bna', 'CAN.G1077.16' => 'can', 'CAN.G1184.5' => 'can', 'CANSAT54G1741' => 'cansat', 'CANSAT56G4043' => 'cansat', 'CANSAT64G2080' => 'cansat', 'CARHR079620' => 'chi', 'CARHR134690' => 'chi', 'Carub.0003s0453' => 'cru', 'Carub.0004s2191' => 'cru', 'Ca_05907_v3' => 'car', 'Ca_09351_v3' => 'car', 'Ca_09352_v3' => 'car', 'Ca_09360_v3' => 'car', 'Ca_09361_v3' => 'car', 'CBR_g1001' => 'cbr', 'CBR_g3522' => 'cbr', 'Cc02_g07330' => 'ccan', 'Cc02_g33510' => 'ccan', 'Cc05_g04230' => 'ccan', 'CDE03G0226' => 'cde', 'CDE04G1806' => 'cde', 'CDE07G0618' => 'cde', 'Cfa001415' => 'cfa', 'Cfa015110' => 'cfa', 'Cfa026924' => 'cfa', 'Ciclev10002100m.g' => 'ccl', 'Ciclev10032419m.g' => 'ccl', 'CiPaw.01G292200' => 'cil', 'CiPaw.02G187300' => 'cil', 'CiPaw.05G163100' => 'cil', 'ClCG03G016960' => 'cla', 'ClCG11G006590' => 'cla', 'COL.COLO4_13480' => 'col', 'COL.COLO4_25522' => 'col', 'Cpa.g.sc48.41' => 'cpa', 'Cpa.g.sc776.6' => 'cpa', 'Cre17.g722700' => 'cre', 'CsaV3_1G038980' => 'csa', 'CsaV3_6G001420' => 'csa', 'CSS0001800' => 'camsi', 'CSS0002569' => 'camsi', 'CSS0023450' => 'camsi', 'DCAR_022180' => 'dca', 'DCAR_024872' => 'dca', 'DCAR_027588' => 'dca', 'Dinv16263' => 'din', 'Dinv23946' => 'din', 'Dinv40279' => 'din', 'Duzib106G0506' => 'dzi', 'Duzib106G0565' => 'dzi', 'Duzib106G1433' => 'dzi', 'Duzib106G1630' => 'dzi', 'Duzib106G1704' => 'dzi', 'Duzib114G0689' => 'dzi', 'Duzib177G0896' => 'dzi', 'ECA233G1873' => 'eca', 'ECA238G2130' => 'eca', 'ECA246G2650' => 'eca', 'EL10Ac2g04688' => 'bvu', 'EL10Ac4g09344' => 'bvu', 'Eucgr.G02991' => 'egr', 'Eucgr.H04483' => 'egr', 'FAN01G0841' => 'fan', 'FAN02G1310' => 'fan', 'FAN03G2328' => 'fan', 'FAN05G1483' => 'fan', 'FAN05G4253' => 'fan', 'FAN06G3391' => 'fan', 'FAN06G4322' => 'fan', 'FAN09G0634' => 'fan', 'FAN10G0083' => 'fan', 'FAN14G1729' => 'fan', 'FAN14G5292' => 'fan', 'FvH4_6g05750' => 'fve', 'FvH4_7g23450' => 'fve', 'Glyma.02G251200' => 'gma', 'Glyma.03G238400' => 'gma', 'Glyma.10G154800' => 'gma', 'Glyma.14G065500' => 'gma', 'Glyma.19G235900' => 'gma', 'Glyma.20G233500' => 'gma', 'Gohir.A05G302300' => 'ghi', 'Gohir.A05G347300' => 'ghi', 'Gohir.A10G223500' => 'ghi', 'Gohir.A11G264400' => 'ghi', 'Gohir.A13G173700' => 'ghi', 'Gohir.D04G065000' => 'ghi', 'Gohir.D05G301800' => 'ghi', 'Gohir.D10G235900' => 'ghi', 'Gohir.D11G274600' => 'ghi', 'Gohir.D13G179400' => 'ghi', 'Gorai.007G296400' => 'gra', 'Gorai.009G319900' => 'gra', 'Gorai.011G269800' => 'gra', 'Gorai.012G073100' => 'gra', 'Gorai.013G204700' => 'gra', 'GSVIVG01000042001' => 'vvi', 'GSVIVG01016466001' => 'vvi', 'GSVIVG01023342001' => 'vvi', 'GSVIVG01036834001' => 'vvi', 'HanXRQChr08g0221211' => 'han', 'HanXRQChr14g0448761' => 'han', 'HanXRQChr15g0473061' => 'han', 'Haze_01563' => 'cav', 'Haze_17129' => 'cav', 'Hma1.2p1_0033F.1_g020140' => 'hma', 'Hma1.2p1_0039F.1_g024690' => 'hma', 'HPP92_003399' => 'vpl', 'HPP92_003418' => 'vpl', 'HPP92_006343' => 'vpl', 'HPP92_024134' => 'vpl', 'Hund07065' => 'sun', 'Hund13800' => 'sun', 'Hund16051' => 'sun', 'Hund21242' => 'sun', 'Lalb_Chr02g0148281' => 'lal', 'Lalb_Chr10g0104771' => 'lal', 'Lalb_Chr18g0045591' => 'lal', 'Lj1g0010880' => 'lja', 'Lj1g0022131' => 'lja', 'Lj5A537T14' => 'lonja', 'Lj5C537T3' => 'lonja', 'Lj8C78T3' => 'lonja', 'Lj9C31T1' => 'lonja', 'LjContig00141g0016830' => 'lja', 'Lsat_1_v5_gn_2_87721' => 'lsa', 'Lsat_1_v5_gn_3_98040' => 'lsa', 'Lsat_1_v5_gn_5_136000' => 'lsa', 'Lsat_1_v5_gn_8_14680' => 'lsa', 'Manes.07G120704' => 'mes', 'Manes.08G121400' => 'mes', 'Manes.09G166400' => 'mes', 'Manes.10G024700' => 'mes', 'Mapoly0005s0055' => 'mpo', 'MBI14_g09011_MAGBIO' => 'mbi', 'MBI17_g13558_MAGBIO' => 'mbi', 'MCO12G418' => 'mco', 'MD01G1140300' => 'mdo', 'MD04G1206000' => 'mdo', 'MD07G1204600' => 'mdo', 'MD12G1220100' => 'mdo', 'Medtr3g069150' => 'mtr', 'Medtr3g069170' => 'mtr', 'Medtr5g081040' => 'mtr', 'Medtr7g113620' => 'mtr', 'MELO3C008246.2' => 'cme', 'MELO3C015325.2' => 'cme', 'Migut.F01287' => 'egut', 'Migut.I00760' => 'egut', 'MSTRG.22749' => 'ama', 'MSTRG.261' => 'ama', 'MSTRG.8286' => 'ama', 'Nitab4.5_0000987g0040' => 'nta', 'Nitab4.5_0005388g0090' => 'nta', 'Nitab4.5_0008497g0010' => 'nta', 'Nitab4.5_0008497g0020' => 'nta', 'Nitab4.5_0008677g0010' => 'nta', 'Nn1g02215' => 'nnu', 'Nn2g11249' => 'nnu', 'Nn2g13497' => 'nnu', 'Nn3g20336' => 'nnu', 'Nn4g26240' => 'nnu', 'Oeu001519.1' => 'oeu', 'Oeu029692.2' => 'oeu', 'Os01g0610500' => 'osa', 'Os05g0455800' => 'osa', 'Peaxi162Scf00037g00230' => 'pax', 'Peaxi162Scf00164g01416' => 'pax', 'Peaxi162Scf00658g00313' => 'pax', 'PGR031G0270' => 'pgr', 'PGR083G2895' => 'pgr', 'PGR142G4126' => 'pgr', 'PGSC0003DMG400027135' => 'stu', 'PGSC0003DMG400028610' => 'stu', 'Phvul.001G237000' => 'pvu', 'Phvul.006G092500' => 'pvu', 'Phvul.007G180400' => 'pvu', 'Phvul.008G230200' => 'pvu', 'Potri.005G033900' => 'ptr', 'Potri.008G060300' => 'ptr', 'Potri.010G198100' => 'ptr', 'Potri.010G198300' => 'ptr', 'Potri.013G023400' => 'ptr', 'Pp3c1_31750' => 'ppa', 'Pp3c1_31760' => 'ppa', 'Pp3c4_14200' => 'ppa', 'PRCOL_00001434' => 'pco', 'Prupe.2G240900' => 'ppe', 'Prupe.6G326800' => 'ppe', 'Psat2g038920' => 'psa', 'Psat3g010720' => 'psa', 'Psat5g128720' => 'psa', 'PSO017G1346' => 'pso', 'PSO063G5958' => 'pso', 'PSO339G3649' => 'pso', 'PSO384G4711' => 'pso', 'QL03p041970' => 'qlo', 'QL08p061675' => 'qlo', 'RcHm_v2.0_Chr1g0368591' => 'rch', 'RcHm_v2.0_Chr3g0454661' => 'rch', 'Rhsim03G0136700' => 'rsi', 'Rhsim05G0142500' => 'rsi', 'Rhsim09G0168000' => 'rsi', 'Rhsim09G0168900' => 'rsi', 'Sabra05G0035900' => 'sbr', 'Sabra08G0044400' => 'sbr', 'Sabra10G0152600' => 'sbr', 'SalBow2G0074' => 'sbo', 'SalBow6G3204' => 'sbo', 'SalBow6G3476' => 'sbo', 'Sc09g0003210' => 'sci', 'Sc10g0001880' => 'sci', 'Sed0003628' => 'sed', 'Sed0004716' => 'sed', 'Sed0012888' => 'sed', 'SEGI_37536' => 'sgi', 'SEGI_40211' => 'sgi', 'SEGI_41301' => 'sgi', 'SGA_v2.0_scaffold2G00987' => 'sas', 'SGA_v2.0_scaffold37G14761' => 'sas', 'SHI03706' => 'shi', 'SMO304G0127' => 'smo', 'Solyc01g098900.3' => 'sly', 'Solyc05g052930.3' => 'sly', 'Sopen01g042440' => 'spe', 'Sopen05g031450' => 'spe', 'Sp2g20700' => 'spa', 'Sp3g04130' => 'spa', 'Sp4g22090' => 'spa', 'TAR362G0444' => 'tar', 'TAR365G0117' => 'tar', 'TAR633G0599' => 'tar', 'TAR633G1303' => 'tar', 'TAR636G1215' => 'tar', 'TAR636G1286' => 'tar', 'THA.LOC104802804' => 'tha', 'THA.LOC104808815' => 'tha', 'Thecc.05G304600' => 'tca', 'Thecc.10G034500' => 'tca', 'Thhalv10004745m.g' => 'esa', 'Thhalv10017061m.g' => 'esa', 'Thhalv10021283m.g' => 'esa', 'TPR.G10328' => 'tpr', 'TPR.G25857' => 'tpr', 'TPR.G33220' => 'tpr', 'TWI12G1165' => 'twi', 'TWI15G0806' => 'twi', 'TWI38G1695' => 'twi', 'TWI56G1185' => 'twi', 'unitig_0.g1112' => 'ugi', 'unitig_27.g25068' => 'ugi', 'vmacro07036' => 'vma', 'vmacro10211' => 'vma', 'vmacro19628' => 'vma', 'VMungo0540G2070' => 'vmu', 'VMungo0647G2156' => 'vmu', 'VMungo0720G2426' => 'vmu', 'VMungo1383G3669' => 'vmu', 'Zm00001eb161830' => 'zma', 'Zm00001eb289530' => 'zma', 'Zm00001eb358000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002081' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002081' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002081' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002081' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002081', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '320', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p22300' => 'bna', 'A03p34080' => 'bna', 'A04p30240' => 'bna', 'Aa31LG5G15750' => 'aar', 'Aa31LG5G19810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4848' => 'aag', 'Actinidia02912' => 'ach', 'Actinidia13182' => 'ach', 'Actinidia19793' => 'ach', 'Ah.06g189280' => 'amhyb', 'Ah.06g189290' => 'amhyb', 'AL3G15720' => 'aly', 'AL4G37350' => 'aly', 'AL6G39520' => 'aly', 'Aqoxy1G00829' => 'aox', 'Aqoxy5G00511' => 'aox', 'arahy.Tifrunner.gnm1.ann1.A3AWFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCQ45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXA9QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHE1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8JJXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YTA3II' => 'arhy', 'AT2G39805' => 'ath', 'AT3G05280' => 'ath', 'AT5G27490' => 'ath', 'ATR0559G126' => 'atr', 'ATR0706G136' => 'atr', 'Atru.chr12.302' => 'acertr', 'Atru.chr12.306' => 'acertr', 'Atru.chr12.307' => 'acertr', 'Atru.chr12.309' => 'acertr', 'Atru.chr12.338' => 'acertr', 'Atru.chr2.413' => 'acertr', 'AUR62012147' => 'cqu', 'AUR62031135' => 'cqu', 'AUR62036539' => 'cqu', 'AUR62040688' => 'cqu', 'BcaB01g03572' => 'bca', 'BcaB04g19273' => 'bca', 'BcaB04g19274' => 'bca', 'BcaB04g21452' => 'bca', 'BcaC01g05463' => 'bca', 'BcaC05g30016' => 'bca', 'BcaC05g30139' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00220' => 'bna', 'BolC1t05704H' => 'bol', 'BolC3t15026H' => 'bol', 'BolC3t16428H' => 'bol', 'BolC4t28261H' => 'bol', 'BolC5t34851H' => 'bol', 'BraA03t11462Z' => 'bra', 'BraA03t12582Z' => 'bra', 'BraA04t18484Z' => 'bra', 'BraA05t23021Z' => 'bra', 'BraSC132t45514Z' => 'bra', 'C03p26400' => 'bna', 'C03p41470' => 'bna', 'C04p67620' => 'bna', 'C05p61910' => 'bna', 'CAN.G1077.16' => 'can', 'CAN.G1184.5' => 'can', 'CANSAT54G1741' => 'cansat', 'CANSAT56G4043' => 'cansat', 'CANSAT64G2080' => 'cansat', 'CARHR079620' => 'chi', 'CARHR134690' => 'chi', 'Carub.0003s0453' => 'cru', 'Carub.0004s2191' => 'cru', 'Ca_05907_v3' => 'car', 'Ca_09351_v3' => 'car', 'Ca_09352_v3' => 'car', 'Ca_09360_v3' => 'car', 'Ca_09361_v3' => 'car', 'CBR_g1001' => 'cbr', 'CBR_g3522' => 'cbr', 'Cc02_g07330' => 'ccan', 'Cc02_g33510' => 'ccan', 'Cc05_g04230' => 'ccan', 'CDE03G0226' => 'cde', 'CDE04G1806' => 'cde', 'CDE07G0618' => 'cde', 'Cfa001415' => 'cfa', 'Cfa015110' => 'cfa', 'Cfa026924' => 'cfa', 'Ciclev10002100m.g' => 'ccl', 'Ciclev10032419m.g' => 'ccl', 'CiPaw.01G292200' => 'cil', 'CiPaw.02G187300' => 'cil', 'CiPaw.05G163100' => 'cil', 'ClCG03G016960' => 'cla', 'ClCG11G006590' => 'cla', 'COL.COLO4_13480' => 'col', 'COL.COLO4_25522' => 'col', 'Cpa.g.sc48.41' => 'cpa', 'Cpa.g.sc776.6' => 'cpa', 'Cre17.g722700' => 'cre', 'CsaV3_1G038980' => 'csa', 'CsaV3_6G001420' => 'csa', 'CSS0001800' => 'camsi', 'CSS0002569' => 'camsi', 'CSS0023450' => 'camsi', 'DCAR_022180' => 'dca', 'DCAR_024872' => 'dca', 'DCAR_027588' => 'dca', 'Dinv16263' => 'din', 'Dinv23946' => 'din', 'Dinv40279' => 'din', 'Duzib106G0506' => 'dzi', 'Duzib106G0565' => 'dzi', 'Duzib106G1433' => 'dzi', 'Duzib106G1630' => 'dzi', 'Duzib106G1704' => 'dzi', 'Duzib114G0689' => 'dzi', 'Duzib177G0896' => 'dzi', 'ECA233G1873' => 'eca', 'ECA238G2130' => 'eca', 'ECA246G2650' => 'eca', 'EL10Ac2g04688' => 'bvu', 'EL10Ac4g09344' => 'bvu', 'Eucgr.G02991' => 'egr', 'Eucgr.H04483' => 'egr', 'FAN01G0841' => 'fan', 'FAN02G1310' => 'fan', 'FAN03G2328' => 'fan', 'FAN05G1483' => 'fan', 'FAN05G4253' => 'fan', 'FAN06G3391' => 'fan', 'FAN06G4322' => 'fan', 'FAN09G0634' => 'fan', 'FAN10G0083' => 'fan', 'FAN14G1729' => 'fan', 'FAN14G5292' => 'fan', 'FvH4_6g05750' => 'fve', 'FvH4_7g23450' => 'fve', 'Glyma.02G251200' => 'gma', 'Glyma.03G238400' => 'gma', 'Glyma.10G154800' => 'gma', 'Glyma.14G065500' => 'gma', 'Glyma.19G235900' => 'gma', 'Glyma.20G233500' => 'gma', 'Gohir.A05G302300' => 'ghi', 'Gohir.A05G347300' => 'ghi', 'Gohir.A10G223500' => 'ghi', 'Gohir.A11G264400' => 'ghi', 'Gohir.A13G173700' => 'ghi', 'Gohir.D04G065000' => 'ghi', 'Gohir.D05G301800' => 'ghi', 'Gohir.D10G235900' => 'ghi', 'Gohir.D11G274600' => 'ghi', 'Gohir.D13G179400' => 'ghi', 'Gorai.007G296400' => 'gra', 'Gorai.009G319900' => 'gra', 'Gorai.011G269800' => 'gra', 'Gorai.012G073100' => 'gra', 'Gorai.013G204700' => 'gra', 'GSVIVG01000042001' => 'vvi', 'GSVIVG01016466001' => 'vvi', 'GSVIVG01023342001' => 'vvi', 'GSVIVG01036834001' => 'vvi', 'HanXRQChr08g0221211' => 'han', 'HanXRQChr14g0448761' => 'han', 'HanXRQChr15g0473061' => 'han', 'Haze_01563' => 'cav', 'Haze_17129' => 'cav', 'Hma1.2p1_0033F.1_g020140' => 'hma', 'Hma1.2p1_0039F.1_g024690' => 'hma', 'HPP92_003399' => 'vpl', 'HPP92_003418' => 'vpl', 'HPP92_006343' => 'vpl', 'HPP92_024134' => 'vpl', 'Hund07065' => 'sun', 'Hund13800' => 'sun', 'Hund16051' => 'sun', 'Hund21242' => 'sun', 'Lalb_Chr02g0148281' => 'lal', 'Lalb_Chr10g0104771' => 'lal', 'Lalb_Chr18g0045591' => 'lal', 'Lj1g0010880' => 'lja', 'Lj1g0022131' => 'lja', 'Lj5A537T14' => 'lonja', 'Lj5C537T3' => 'lonja', 'Lj8C78T3' => 'lonja', 'Lj9C31T1' => 'lonja', 'LjContig00141g0016830' => 'lja', 'Lsat_1_v5_gn_2_87721' => 'lsa', 'Lsat_1_v5_gn_3_98040' => 'lsa', 'Lsat_1_v5_gn_5_136000' => 'lsa', 'Lsat_1_v5_gn_8_14680' => 'lsa', 'Manes.07G120704' => 'mes', 'Manes.08G121400' => 'mes', 'Manes.09G166400' => 'mes', 'Manes.10G024700' => 'mes', 'Mapoly0005s0055' => 'mpo', 'MBI14_g09011_MAGBIO' => 'mbi', 'MBI17_g13558_MAGBIO' => 'mbi', 'MCO12G418' => 'mco', 'MD01G1140300' => 'mdo', 'MD04G1206000' => 'mdo', 'MD07G1204600' => 'mdo', 'MD12G1220100' => 'mdo', 'Medtr3g069150' => 'mtr', 'Medtr3g069170' => 'mtr', 'Medtr5g081040' => 'mtr', 'Medtr7g113620' => 'mtr', 'MELO3C008246.2' => 'cme', 'MELO3C015325.2' => 'cme', 'Migut.F01287' => 'egut', 'Migut.I00760' => 'egut', 'MSTRG.22749' => 'ama', 'MSTRG.261' => 'ama', 'MSTRG.8286' => 'ama', 'Nitab4.5_0000987g0040' => 'nta', 'Nitab4.5_0005388g0090' => 'nta', 'Nitab4.5_0008497g0010' => 'nta', 'Nitab4.5_0008497g0020' => 'nta', 'Nitab4.5_0008677g0010' => 'nta', 'Nn1g02215' => 'nnu', 'Nn2g11249' => 'nnu', 'Nn2g13497' => 'nnu', 'Nn3g20336' => 'nnu', 'Nn4g26240' => 'nnu', 'Oeu001519.1' => 'oeu', 'Oeu029692.2' => 'oeu', 'Os01g0610500' => 'osa', 'Os05g0455800' => 'osa', 'Peaxi162Scf00037g00230' => 'pax', 'Peaxi162Scf00164g01416' => 'pax', 'Peaxi162Scf00658g00313' => 'pax', 'PGR031G0270' => 'pgr', 'PGR083G2895' => 'pgr', 'PGR142G4126' => 'pgr', 'PGSC0003DMG400027135' => 'stu', 'PGSC0003DMG400028610' => 'stu', 'Phvul.001G237000' => 'pvu', 'Phvul.006G092500' => 'pvu', 'Phvul.007G180400' => 'pvu', 'Phvul.008G230200' => 'pvu', 'Potri.005G033900' => 'ptr', 'Potri.008G060300' => 'ptr', 'Potri.010G198100' => 'ptr', 'Potri.010G198300' => 'ptr', 'Potri.013G023400' => 'ptr', 'Pp3c1_31750' => 'ppa', 'Pp3c1_31760' => 'ppa', 'Pp3c4_14200' => 'ppa', 'PRCOL_00001434' => 'pco', 'Prupe.2G240900' => 'ppe', 'Prupe.6G326800' => 'ppe', 'Psat2g038920' => 'psa', 'Psat3g010720' => 'psa', 'Psat5g128720' => 'psa', 'PSO017G1346' => 'pso', 'PSO063G5958' => 'pso', 'PSO339G3649' => 'pso', 'PSO384G4711' => 'pso', 'QL03p041970' => 'qlo', 'QL08p061675' => 'qlo', 'RcHm_v2.0_Chr1g0368591' => 'rch', 'RcHm_v2.0_Chr3g0454661' => 'rch', 'Rhsim03G0136700' => 'rsi', 'Rhsim05G0142500' => 'rsi', 'Rhsim09G0168000' => 'rsi', 'Rhsim09G0168900' => 'rsi', 'Sabra05G0035900' => 'sbr', 'Sabra08G0044400' => 'sbr', 'Sabra10G0152600' => 'sbr', 'SalBow2G0074' => 'sbo', 'SalBow6G3204' => 'sbo', 'SalBow6G3476' => 'sbo', 'Sc09g0003210' => 'sci', 'Sc10g0001880' => 'sci', 'Sed0003628' => 'sed', 'Sed0004716' => 'sed', 'Sed0012888' => 'sed', 'SEGI_37536' => 'sgi', 'SEGI_40211' => 'sgi', 'SEGI_41301' => 'sgi', 'SGA_v2.0_scaffold2G00987' => 'sas', 'SGA_v2.0_scaffold37G14761' => 'sas', 'SHI03706' => 'shi', 'SMO304G0127' => 'smo', 'Solyc01g098900.3' => 'sly', 'Solyc05g052930.3' => 'sly', 'Sopen01g042440' => 'spe', 'Sopen05g031450' => 'spe', 'Sp2g20700' => 'spa', 'Sp3g04130' => 'spa', 'Sp4g22090' => 'spa', 'TAR362G0444' => 'tar', 'TAR365G0117' => 'tar', 'TAR633G0599' => 'tar', 'TAR633G1303' => 'tar', 'TAR636G1215' => 'tar', 'TAR636G1286' => 'tar', 'THA.LOC104802804' => 'tha', 'THA.LOC104808815' => 'tha', 'Thecc.05G304600' => 'tca', 'Thecc.10G034500' => 'tca', 'Thhalv10004745m.g' => 'esa', 'Thhalv10017061m.g' => 'esa', 'Thhalv10021283m.g' => 'esa', 'TPR.G10328' => 'tpr', 'TPR.G25857' => 'tpr', 'TPR.G33220' => 'tpr', 'TWI12G1165' => 'twi', 'TWI15G0806' => 'twi', 'TWI38G1695' => 'twi', 'TWI56G1185' => 'twi', 'unitig_0.g1112' => 'ugi', 'unitig_27.g25068' => 'ugi', 'vmacro07036' => 'vma', 'vmacro10211' => 'vma', 'vmacro19628' => 'vma', 'VMungo0540G2070' => 'vmu', 'VMungo0647G2156' => 'vmu', 'VMungo0720G2426' => 'vmu', 'VMungo1383G3669' => 'vmu', 'Zm00001eb161830' => 'zma', 'Zm00001eb289530' => 'zma', 'Zm00001eb358000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002081', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002081' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002081', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '320', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002081' ) ), 'genes' => array( 'A03p22300' => 'bna', 'A03p34080' => 'bna', 'A04p30240' => 'bna', 'Aa31LG5G15750' => 'aar', 'Aa31LG5G19810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4848' => 'aag', 'Actinidia02912' => 'ach', 'Actinidia13182' => 'ach', 'Actinidia19793' => 'ach', 'Ah.06g189280' => 'amhyb', 'Ah.06g189290' => 'amhyb', 'AL3G15720' => 'aly', 'AL4G37350' => 'aly', 'AL6G39520' => 'aly', 'Aqoxy1G00829' => 'aox', 'Aqoxy5G00511' => 'aox', 'arahy.Tifrunner.gnm1.ann1.A3AWFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCQ45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXA9QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHE1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8JJXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YTA3II' => 'arhy', 'AT2G39805' => 'ath', 'AT3G05280' => 'ath', 'AT5G27490' => 'ath', 'ATR0559G126' => 'atr', 'ATR0706G136' => 'atr', 'Atru.chr12.302' => 'acertr', 'Atru.chr12.306' => 'acertr', 'Atru.chr12.307' => 'acertr', 'Atru.chr12.309' => 'acertr', 'Atru.chr12.338' => 'acertr', 'Atru.chr2.413' => 'acertr', 'AUR62012147' => 'cqu', 'AUR62031135' => 'cqu', 'AUR62036539' => 'cqu', 'AUR62040688' => 'cqu', 'BcaB01g03572' => 'bca', 'BcaB04g19273' => 'bca', 'BcaB04g19274' => 'bca', 'BcaB04g21452' => 'bca', 'BcaC01g05463' => 'bca', 'BcaC05g30016' => 'bca', 'BcaC05g30139' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00220' => 'bna', 'BolC1t05704H' => 'bol', 'BolC3t15026H' => 'bol', 'BolC3t16428H' => 'bol', 'BolC4t28261H' => 'bol', 'BolC5t34851H' => 'bol', 'BraA03t11462Z' => 'bra', 'BraA03t12582Z' => 'bra', 'BraA04t18484Z' => 'bra', 'BraA05t23021Z' => 'bra', 'BraSC132t45514Z' => 'bra', 'C03p26400' => 'bna', 'C03p41470' => 'bna', 'C04p67620' => 'bna', 'C05p61910' => 'bna', 'CAN.G1077.16' => 'can', 'CAN.G1184.5' => 'can', 'CANSAT54G1741' => 'cansat', 'CANSAT56G4043' => 'cansat', 'CANSAT64G2080' => 'cansat', 'CARHR079620' => 'chi', 'CARHR134690' => 'chi', 'Carub.0003s0453' => 'cru', 'Carub.0004s2191' => 'cru', 'Ca_05907_v3' => 'car', 'Ca_09351_v3' => 'car', 'Ca_09352_v3' => 'car', 'Ca_09360_v3' => 'car', 'Ca_09361_v3' => 'car', 'CBR_g1001' => 'cbr', 'CBR_g3522' => 'cbr', 'Cc02_g07330' => 'ccan', 'Cc02_g33510' => 'ccan', 'Cc05_g04230' => 'ccan', 'CDE03G0226' => 'cde', 'CDE04G1806' => 'cde', 'CDE07G0618' => 'cde', 'Cfa001415' => 'cfa', 'Cfa015110' => 'cfa', 'Cfa026924' => 'cfa', 'Ciclev10002100m.g' => 'ccl', 'Ciclev10032419m.g' => 'ccl', 'CiPaw.01G292200' => 'cil', 'CiPaw.02G187300' => 'cil', 'CiPaw.05G163100' => 'cil', 'ClCG03G016960' => 'cla', 'ClCG11G006590' => 'cla', 'COL.COLO4_13480' => 'col', 'COL.COLO4_25522' => 'col', 'Cpa.g.sc48.41' => 'cpa', 'Cpa.g.sc776.6' => 'cpa', 'Cre17.g722700' => 'cre', 'CsaV3_1G038980' => 'csa', 'CsaV3_6G001420' => 'csa', 'CSS0001800' => 'camsi', 'CSS0002569' => 'camsi', 'CSS0023450' => 'camsi', 'DCAR_022180' => 'dca', 'DCAR_024872' => 'dca', 'DCAR_027588' => 'dca', 'Dinv16263' => 'din', 'Dinv23946' => 'din', 'Dinv40279' => 'din', 'Duzib106G0506' => 'dzi', 'Duzib106G0565' => 'dzi', 'Duzib106G1433' => 'dzi', 'Duzib106G1630' => 'dzi', 'Duzib106G1704' => 'dzi', 'Duzib114G0689' => 'dzi', 'Duzib177G0896' => 'dzi', 'ECA233G1873' => 'eca', 'ECA238G2130' => 'eca', 'ECA246G2650' => 'eca', 'EL10Ac2g04688' => 'bvu', 'EL10Ac4g09344' => 'bvu', 'Eucgr.G02991' => 'egr', 'Eucgr.H04483' => 'egr', 'FAN01G0841' => 'fan', 'FAN02G1310' => 'fan', 'FAN03G2328' => 'fan', 'FAN05G1483' => 'fan', 'FAN05G4253' => 'fan', 'FAN06G3391' => 'fan', 'FAN06G4322' => 'fan', 'FAN09G0634' => 'fan', 'FAN10G0083' => 'fan', 'FAN14G1729' => 'fan', 'FAN14G5292' => 'fan', 'FvH4_6g05750' => 'fve', 'FvH4_7g23450' => 'fve', 'Glyma.02G251200' => 'gma', 'Glyma.03G238400' => 'gma', 'Glyma.10G154800' => 'gma', 'Glyma.14G065500' => 'gma', 'Glyma.19G235900' => 'gma', 'Glyma.20G233500' => 'gma', 'Gohir.A05G302300' => 'ghi', 'Gohir.A05G347300' => 'ghi', 'Gohir.A10G223500' => 'ghi', 'Gohir.A11G264400' => 'ghi', 'Gohir.A13G173700' => 'ghi', 'Gohir.D04G065000' => 'ghi', 'Gohir.D05G301800' => 'ghi', 'Gohir.D10G235900' => 'ghi', 'Gohir.D11G274600' => 'ghi', 'Gohir.D13G179400' => 'ghi', 'Gorai.007G296400' => 'gra', 'Gorai.009G319900' => 'gra', 'Gorai.011G269800' => 'gra', 'Gorai.012G073100' => 'gra', 'Gorai.013G204700' => 'gra', 'GSVIVG01000042001' => 'vvi', 'GSVIVG01016466001' => 'vvi', 'GSVIVG01023342001' => 'vvi', 'GSVIVG01036834001' => 'vvi', 'HanXRQChr08g0221211' => 'han', 'HanXRQChr14g0448761' => 'han', 'HanXRQChr15g0473061' => 'han', 'Haze_01563' => 'cav', 'Haze_17129' => 'cav', 'Hma1.2p1_0033F.1_g020140' => 'hma', 'Hma1.2p1_0039F.1_g024690' => 'hma', 'HPP92_003399' => 'vpl', 'HPP92_003418' => 'vpl', 'HPP92_006343' => 'vpl', 'HPP92_024134' => 'vpl', 'Hund07065' => 'sun', 'Hund13800' => 'sun', 'Hund16051' => 'sun', 'Hund21242' => 'sun', 'Lalb_Chr02g0148281' => 'lal', 'Lalb_Chr10g0104771' => 'lal', 'Lalb_Chr18g0045591' => 'lal', 'Lj1g0010880' => 'lja', 'Lj1g0022131' => 'lja', 'Lj5A537T14' => 'lonja', 'Lj5C537T3' => 'lonja', 'Lj8C78T3' => 'lonja', 'Lj9C31T1' => 'lonja', 'LjContig00141g0016830' => 'lja', 'Lsat_1_v5_gn_2_87721' => 'lsa', 'Lsat_1_v5_gn_3_98040' => 'lsa', 'Lsat_1_v5_gn_5_136000' => 'lsa', 'Lsat_1_v5_gn_8_14680' => 'lsa', 'Manes.07G120704' => 'mes', 'Manes.08G121400' => 'mes', 'Manes.09G166400' => 'mes', 'Manes.10G024700' => 'mes', 'Mapoly0005s0055' => 'mpo', 'MBI14_g09011_MAGBIO' => 'mbi', 'MBI17_g13558_MAGBIO' => 'mbi', 'MCO12G418' => 'mco', 'MD01G1140300' => 'mdo', 'MD04G1206000' => 'mdo', 'MD07G1204600' => 'mdo', 'MD12G1220100' => 'mdo', 'Medtr3g069150' => 'mtr', 'Medtr3g069170' => 'mtr', 'Medtr5g081040' => 'mtr', 'Medtr7g113620' => 'mtr', 'MELO3C008246.2' => 'cme', 'MELO3C015325.2' => 'cme', 'Migut.F01287' => 'egut', 'Migut.I00760' => 'egut', 'MSTRG.22749' => 'ama', 'MSTRG.261' => 'ama', 'MSTRG.8286' => 'ama', 'Nitab4.5_0000987g0040' => 'nta', 'Nitab4.5_0005388g0090' => 'nta', 'Nitab4.5_0008497g0010' => 'nta', 'Nitab4.5_0008497g0020' => 'nta', 'Nitab4.5_0008677g0010' => 'nta', 'Nn1g02215' => 'nnu', 'Nn2g11249' => 'nnu', 'Nn2g13497' => 'nnu', 'Nn3g20336' => 'nnu', 'Nn4g26240' => 'nnu', 'Oeu001519.1' => 'oeu', 'Oeu029692.2' => 'oeu', 'Os01g0610500' => 'osa', 'Os05g0455800' => 'osa', 'Peaxi162Scf00037g00230' => 'pax', 'Peaxi162Scf00164g01416' => 'pax', 'Peaxi162Scf00658g00313' => 'pax', 'PGR031G0270' => 'pgr', 'PGR083G2895' => 'pgr', 'PGR142G4126' => 'pgr', 'PGSC0003DMG400027135' => 'stu', 'PGSC0003DMG400028610' => 'stu', 'Phvul.001G237000' => 'pvu', 'Phvul.006G092500' => 'pvu', 'Phvul.007G180400' => 'pvu', 'Phvul.008G230200' => 'pvu', 'Potri.005G033900' => 'ptr', 'Potri.008G060300' => 'ptr', 'Potri.010G198100' => 'ptr', 'Potri.010G198300' => 'ptr', 'Potri.013G023400' => 'ptr', 'Pp3c1_31750' => 'ppa', 'Pp3c1_31760' => 'ppa', 'Pp3c4_14200' => 'ppa', 'PRCOL_00001434' => 'pco', 'Prupe.2G240900' => 'ppe', 'Prupe.6G326800' => 'ppe', 'Psat2g038920' => 'psa', 'Psat3g010720' => 'psa', 'Psat5g128720' => 'psa', 'PSO017G1346' => 'pso', 'PSO063G5958' => 'pso', 'PSO339G3649' => 'pso', 'PSO384G4711' => 'pso', 'QL03p041970' => 'qlo', 'QL08p061675' => 'qlo', 'RcHm_v2.0_Chr1g0368591' => 'rch', 'RcHm_v2.0_Chr3g0454661' => 'rch', 'Rhsim03G0136700' => 'rsi', 'Rhsim05G0142500' => 'rsi', 'Rhsim09G0168000' => 'rsi', 'Rhsim09G0168900' => 'rsi', 'Sabra05G0035900' => 'sbr', 'Sabra08G0044400' => 'sbr', 'Sabra10G0152600' => 'sbr', 'SalBow2G0074' => 'sbo', 'SalBow6G3204' => 'sbo', 'SalBow6G3476' => 'sbo', 'Sc09g0003210' => 'sci', 'Sc10g0001880' => 'sci', 'Sed0003628' => 'sed', 'Sed0004716' => 'sed', 'Sed0012888' => 'sed', 'SEGI_37536' => 'sgi', 'SEGI_40211' => 'sgi', 'SEGI_41301' => 'sgi', 'SGA_v2.0_scaffold2G00987' => 'sas', 'SGA_v2.0_scaffold37G14761' => 'sas', 'SHI03706' => 'shi', 'SMO304G0127' => 'smo', 'Solyc01g098900.3' => 'sly', 'Solyc05g052930.3' => 'sly', 'Sopen01g042440' => 'spe', 'Sopen05g031450' => 'spe', 'Sp2g20700' => 'spa', 'Sp3g04130' => 'spa', 'Sp4g22090' => 'spa', 'TAR362G0444' => 'tar', 'TAR365G0117' => 'tar', 'TAR633G0599' => 'tar', 'TAR633G1303' => 'tar', 'TAR636G1215' => 'tar', 'TAR636G1286' => 'tar', 'THA.LOC104802804' => 'tha', 'THA.LOC104808815' => 'tha', 'Thecc.05G304600' => 'tca', 'Thecc.10G034500' => 'tca', 'Thhalv10004745m.g' => 'esa', 'Thhalv10017061m.g' => 'esa', 'Thhalv10021283m.g' => 'esa', 'TPR.G10328' => 'tpr', 'TPR.G25857' => 'tpr', 'TPR.G33220' => 'tpr', 'TWI12G1165' => 'twi', 'TWI15G0806' => 'twi', 'TWI38G1695' => 'twi', 'TWI56G1185' => 'twi', 'unitig_0.g1112' => 'ugi', 'unitig_27.g25068' => 'ugi', 'vmacro07036' => 'vma', 'vmacro10211' => 'vma', 'vmacro19628' => 'vma', 'VMungo0540G2070' => 'vmu', 'VMungo0647G2156' => 'vmu', 'VMungo0720G2426' => 'vmu', 'VMungo1383G3669' => 'vmu', 'Zm00001eb161830' => 'zma', 'Zm00001eb289530' => 'zma', 'Zm00001eb358000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002081' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002081' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002081' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002081' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002081', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '320', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p22300' => 'bna', 'A03p34080' => 'bna', 'A04p30240' => 'bna', 'Aa31LG5G15750' => 'aar', 'Aa31LG5G19810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4848' => 'aag', 'Actinidia02912' => 'ach', 'Actinidia13182' => 'ach', 'Actinidia19793' => 'ach', 'Ah.06g189280' => 'amhyb', 'Ah.06g189290' => 'amhyb', 'AL3G15720' => 'aly', 'AL4G37350' => 'aly', 'AL6G39520' => 'aly', 'Aqoxy1G00829' => 'aox', 'Aqoxy5G00511' => 'aox', 'arahy.Tifrunner.gnm1.ann1.A3AWFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCQ45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXA9QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHE1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8JJXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YTA3II' => 'arhy', 'AT2G39805' => 'ath', 'AT3G05280' => 'ath', 'AT5G27490' => 'ath', 'ATR0559G126' => 'atr', 'ATR0706G136' => 'atr', 'Atru.chr12.302' => 'acertr', 'Atru.chr12.306' => 'acertr', 'Atru.chr12.307' => 'acertr', 'Atru.chr12.309' => 'acertr', 'Atru.chr12.338' => 'acertr', 'Atru.chr2.413' => 'acertr', 'AUR62012147' => 'cqu', 'AUR62031135' => 'cqu', 'AUR62036539' => 'cqu', 'AUR62040688' => 'cqu', 'BcaB01g03572' => 'bca', 'BcaB04g19273' => 'bca', 'BcaB04g19274' => 'bca', 'BcaB04g21452' => 'bca', 'BcaC01g05463' => 'bca', 'BcaC05g30016' => 'bca', 'BcaC05g30139' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00220' => 'bna', 'BolC1t05704H' => 'bol', 'BolC3t15026H' => 'bol', 'BolC3t16428H' => 'bol', 'BolC4t28261H' => 'bol', 'BolC5t34851H' => 'bol', 'BraA03t11462Z' => 'bra', 'BraA03t12582Z' => 'bra', 'BraA04t18484Z' => 'bra', 'BraA05t23021Z' => 'bra', 'BraSC132t45514Z' => 'bra', 'C03p26400' => 'bna', 'C03p41470' => 'bna', 'C04p67620' => 'bna', 'C05p61910' => 'bna', 'CAN.G1077.16' => 'can', 'CAN.G1184.5' => 'can', 'CANSAT54G1741' => 'cansat', 'CANSAT56G4043' => 'cansat', 'CANSAT64G2080' => 'cansat', 'CARHR079620' => 'chi', 'CARHR134690' => 'chi', 'Carub.0003s0453' => 'cru', 'Carub.0004s2191' => 'cru', 'Ca_05907_v3' => 'car', 'Ca_09351_v3' => 'car', 'Ca_09352_v3' => 'car', 'Ca_09360_v3' => 'car', 'Ca_09361_v3' => 'car', 'CBR_g1001' => 'cbr', 'CBR_g3522' => 'cbr', 'Cc02_g07330' => 'ccan', 'Cc02_g33510' => 'ccan', 'Cc05_g04230' => 'ccan', 'CDE03G0226' => 'cde', 'CDE04G1806' => 'cde', 'CDE07G0618' => 'cde', 'Cfa001415' => 'cfa', 'Cfa015110' => 'cfa', 'Cfa026924' => 'cfa', 'Ciclev10002100m.g' => 'ccl', 'Ciclev10032419m.g' => 'ccl', 'CiPaw.01G292200' => 'cil', 'CiPaw.02G187300' => 'cil', 'CiPaw.05G163100' => 'cil', 'ClCG03G016960' => 'cla', 'ClCG11G006590' => 'cla', 'COL.COLO4_13480' => 'col', 'COL.COLO4_25522' => 'col', 'Cpa.g.sc48.41' => 'cpa', 'Cpa.g.sc776.6' => 'cpa', 'Cre17.g722700' => 'cre', 'CsaV3_1G038980' => 'csa', 'CsaV3_6G001420' => 'csa', 'CSS0001800' => 'camsi', 'CSS0002569' => 'camsi', 'CSS0023450' => 'camsi', 'DCAR_022180' => 'dca', 'DCAR_024872' => 'dca', 'DCAR_027588' => 'dca', 'Dinv16263' => 'din', 'Dinv23946' => 'din', 'Dinv40279' => 'din', 'Duzib106G0506' => 'dzi', 'Duzib106G0565' => 'dzi', 'Duzib106G1433' => 'dzi', 'Duzib106G1630' => 'dzi', 'Duzib106G1704' => 'dzi', 'Duzib114G0689' => 'dzi', 'Duzib177G0896' => 'dzi', 'ECA233G1873' => 'eca', 'ECA238G2130' => 'eca', 'ECA246G2650' => 'eca', 'EL10Ac2g04688' => 'bvu', 'EL10Ac4g09344' => 'bvu', 'Eucgr.G02991' => 'egr', 'Eucgr.H04483' => 'egr', 'FAN01G0841' => 'fan', 'FAN02G1310' => 'fan', 'FAN03G2328' => 'fan', 'FAN05G1483' => 'fan', 'FAN05G4253' => 'fan', 'FAN06G3391' => 'fan', 'FAN06G4322' => 'fan', 'FAN09G0634' => 'fan', 'FAN10G0083' => 'fan', 'FAN14G1729' => 'fan', 'FAN14G5292' => 'fan', 'FvH4_6g05750' => 'fve', 'FvH4_7g23450' => 'fve', 'Glyma.02G251200' => 'gma', 'Glyma.03G238400' => 'gma', 'Glyma.10G154800' => 'gma', 'Glyma.14G065500' => 'gma', 'Glyma.19G235900' => 'gma', 'Glyma.20G233500' => 'gma', 'Gohir.A05G302300' => 'ghi', 'Gohir.A05G347300' => 'ghi', 'Gohir.A10G223500' => 'ghi', 'Gohir.A11G264400' => 'ghi', 'Gohir.A13G173700' => 'ghi', 'Gohir.D04G065000' => 'ghi', 'Gohir.D05G301800' => 'ghi', 'Gohir.D10G235900' => 'ghi', 'Gohir.D11G274600' => 'ghi', 'Gohir.D13G179400' => 'ghi', 'Gorai.007G296400' => 'gra', 'Gorai.009G319900' => 'gra', 'Gorai.011G269800' => 'gra', 'Gorai.012G073100' => 'gra', 'Gorai.013G204700' => 'gra', 'GSVIVG01000042001' => 'vvi', 'GSVIVG01016466001' => 'vvi', 'GSVIVG01023342001' => 'vvi', 'GSVIVG01036834001' => 'vvi', 'HanXRQChr08g0221211' => 'han', 'HanXRQChr14g0448761' => 'han', 'HanXRQChr15g0473061' => 'han', 'Haze_01563' => 'cav', 'Haze_17129' => 'cav', 'Hma1.2p1_0033F.1_g020140' => 'hma', 'Hma1.2p1_0039F.1_g024690' => 'hma', 'HPP92_003399' => 'vpl', 'HPP92_003418' => 'vpl', 'HPP92_006343' => 'vpl', 'HPP92_024134' => 'vpl', 'Hund07065' => 'sun', 'Hund13800' => 'sun', 'Hund16051' => 'sun', 'Hund21242' => 'sun', 'Lalb_Chr02g0148281' => 'lal', 'Lalb_Chr10g0104771' => 'lal', 'Lalb_Chr18g0045591' => 'lal', 'Lj1g0010880' => 'lja', 'Lj1g0022131' => 'lja', 'Lj5A537T14' => 'lonja', 'Lj5C537T3' => 'lonja', 'Lj8C78T3' => 'lonja', 'Lj9C31T1' => 'lonja', 'LjContig00141g0016830' => 'lja', 'Lsat_1_v5_gn_2_87721' => 'lsa', 'Lsat_1_v5_gn_3_98040' => 'lsa', 'Lsat_1_v5_gn_5_136000' => 'lsa', 'Lsat_1_v5_gn_8_14680' => 'lsa', 'Manes.07G120704' => 'mes', 'Manes.08G121400' => 'mes', 'Manes.09G166400' => 'mes', 'Manes.10G024700' => 'mes', 'Mapoly0005s0055' => 'mpo', 'MBI14_g09011_MAGBIO' => 'mbi', 'MBI17_g13558_MAGBIO' => 'mbi', 'MCO12G418' => 'mco', 'MD01G1140300' => 'mdo', 'MD04G1206000' => 'mdo', 'MD07G1204600' => 'mdo', 'MD12G1220100' => 'mdo', 'Medtr3g069150' => 'mtr', 'Medtr3g069170' => 'mtr', 'Medtr5g081040' => 'mtr', 'Medtr7g113620' => 'mtr', 'MELO3C008246.2' => 'cme', 'MELO3C015325.2' => 'cme', 'Migut.F01287' => 'egut', 'Migut.I00760' => 'egut', 'MSTRG.22749' => 'ama', 'MSTRG.261' => 'ama', 'MSTRG.8286' => 'ama', 'Nitab4.5_0000987g0040' => 'nta', 'Nitab4.5_0005388g0090' => 'nta', 'Nitab4.5_0008497g0010' => 'nta', 'Nitab4.5_0008497g0020' => 'nta', 'Nitab4.5_0008677g0010' => 'nta', 'Nn1g02215' => 'nnu', 'Nn2g11249' => 'nnu', 'Nn2g13497' => 'nnu', 'Nn3g20336' => 'nnu', 'Nn4g26240' => 'nnu', 'Oeu001519.1' => 'oeu', 'Oeu029692.2' => 'oeu', 'Os01g0610500' => 'osa', 'Os05g0455800' => 'osa', 'Peaxi162Scf00037g00230' => 'pax', 'Peaxi162Scf00164g01416' => 'pax', 'Peaxi162Scf00658g00313' => 'pax', 'PGR031G0270' => 'pgr', 'PGR083G2895' => 'pgr', 'PGR142G4126' => 'pgr', 'PGSC0003DMG400027135' => 'stu', 'PGSC0003DMG400028610' => 'stu', 'Phvul.001G237000' => 'pvu', 'Phvul.006G092500' => 'pvu', 'Phvul.007G180400' => 'pvu', 'Phvul.008G230200' => 'pvu', 'Potri.005G033900' => 'ptr', 'Potri.008G060300' => 'ptr', 'Potri.010G198100' => 'ptr', 'Potri.010G198300' => 'ptr', 'Potri.013G023400' => 'ptr', 'Pp3c1_31750' => 'ppa', 'Pp3c1_31760' => 'ppa', 'Pp3c4_14200' => 'ppa', 'PRCOL_00001434' => 'pco', 'Prupe.2G240900' => 'ppe', 'Prupe.6G326800' => 'ppe', 'Psat2g038920' => 'psa', 'Psat3g010720' => 'psa', 'Psat5g128720' => 'psa', 'PSO017G1346' => 'pso', 'PSO063G5958' => 'pso', 'PSO339G3649' => 'pso', 'PSO384G4711' => 'pso', 'QL03p041970' => 'qlo', 'QL08p061675' => 'qlo', 'RcHm_v2.0_Chr1g0368591' => 'rch', 'RcHm_v2.0_Chr3g0454661' => 'rch', 'Rhsim03G0136700' => 'rsi', 'Rhsim05G0142500' => 'rsi', 'Rhsim09G0168000' => 'rsi', 'Rhsim09G0168900' => 'rsi', 'Sabra05G0035900' => 'sbr', 'Sabra08G0044400' => 'sbr', 'Sabra10G0152600' => 'sbr', 'SalBow2G0074' => 'sbo', 'SalBow6G3204' => 'sbo', 'SalBow6G3476' => 'sbo', 'Sc09g0003210' => 'sci', 'Sc10g0001880' => 'sci', 'Sed0003628' => 'sed', 'Sed0004716' => 'sed', 'Sed0012888' => 'sed', 'SEGI_37536' => 'sgi', 'SEGI_40211' => 'sgi', 'SEGI_41301' => 'sgi', 'SGA_v2.0_scaffold2G00987' => 'sas', 'SGA_v2.0_scaffold37G14761' => 'sas', 'SHI03706' => 'shi', 'SMO304G0127' => 'smo', 'Solyc01g098900.3' => 'sly', 'Solyc05g052930.3' => 'sly', 'Sopen01g042440' => 'spe', 'Sopen05g031450' => 'spe', 'Sp2g20700' => 'spa', 'Sp3g04130' => 'spa', 'Sp4g22090' => 'spa', 'TAR362G0444' => 'tar', 'TAR365G0117' => 'tar', 'TAR633G0599' => 'tar', 'TAR633G1303' => 'tar', 'TAR636G1215' => 'tar', 'TAR636G1286' => 'tar', 'THA.LOC104802804' => 'tha', 'THA.LOC104808815' => 'tha', 'Thecc.05G304600' => 'tca', 'Thecc.10G034500' => 'tca', 'Thhalv10004745m.g' => 'esa', 'Thhalv10017061m.g' => 'esa', 'Thhalv10021283m.g' => 'esa', 'TPR.G10328' => 'tpr', 'TPR.G25857' => 'tpr', 'TPR.G33220' => 'tpr', 'TWI12G1165' => 'twi', 'TWI15G0806' => 'twi', 'TWI38G1695' => 'twi', 'TWI56G1185' => 'twi', 'unitig_0.g1112' => 'ugi', 'unitig_27.g25068' => 'ugi', 'vmacro07036' => 'vma', 'vmacro10211' => 'vma', 'vmacro19628' => 'vma', 'VMungo0540G2070' => 'vmu', 'VMungo0647G2156' => 'vmu', 'VMungo0720G2426' => 'vmu', 'VMungo1383G3669' => 'vmu', 'Zm00001eb161830' => 'zma', 'Zm00001eb289530' => 'zma', 'Zm00001eb358000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002081', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002081' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002081', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '320', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002081' ) ), 'genes' => array( 'A03p22300' => 'bna', 'A03p34080' => 'bna', 'A04p30240' => 'bna', 'Aa31LG5G15750' => 'aar', 'Aa31LG5G19810' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4848' => 'aag', 'Actinidia02912' => 'ach', 'Actinidia13182' => 'ach', 'Actinidia19793' => 'ach', 'Ah.06g189280' => 'amhyb', 'Ah.06g189290' => 'amhyb', 'AL3G15720' => 'aly', 'AL4G37350' => 'aly', 'AL6G39520' => 'aly', 'Aqoxy1G00829' => 'aox', 'Aqoxy5G00511' => 'aox', 'arahy.Tifrunner.gnm1.ann1.A3AWFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCQ45K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXA9QZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHE1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8JJXT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YTA3II' => 'arhy', 'AT2G39805' => 'ath', 'AT3G05280' => 'ath', 'AT5G27490' => 'ath', 'ATR0559G126' => 'atr', 'ATR0706G136' => 'atr', 'Atru.chr12.302' => 'acertr', 'Atru.chr12.306' => 'acertr', 'Atru.chr12.307' => 'acertr', 'Atru.chr12.309' => 'acertr', 'Atru.chr12.338' => 'acertr', 'Atru.chr2.413' => 'acertr', 'AUR62012147' => 'cqu', 'AUR62031135' => 'cqu', 'AUR62036539' => 'cqu', 'AUR62040688' => 'cqu', 'BcaB01g03572' => 'bca', 'BcaB04g19273' => 'bca', 'BcaB04g19274' => 'bca', 'BcaB04g21452' => 'bca', 'BcaC01g05463' => 'bca', 'BcaC05g30016' => 'bca', 'BcaC05g30139' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00220' => 'bna', 'BolC1t05704H' => 'bol', 'BolC3t15026H' => 'bol', 'BolC3t16428H' => 'bol', 'BolC4t28261H' => 'bol', 'BolC5t34851H' => 'bol', 'BraA03t11462Z' => 'bra', 'BraA03t12582Z' => 'bra', 'BraA04t18484Z' => 'bra', 'BraA05t23021Z' => 'bra', 'BraSC132t45514Z' => 'bra', 'C03p26400' => 'bna', 'C03p41470' => 'bna', 'C04p67620' => 'bna', 'C05p61910' => 'bna', 'CAN.G1077.16' => 'can', 'CAN.G1184.5' => 'can', 'CANSAT54G1741' => 'cansat', 'CANSAT56G4043' => 'cansat', 'CANSAT64G2080' => 'cansat', 'CARHR079620' => 'chi', 'CARHR134690' => 'chi', 'Carub.0003s0453' => 'cru', 'Carub.0004s2191' => 'cru', 'Ca_05907_v3' => 'car', 'Ca_09351_v3' => 'car', 'Ca_09352_v3' => 'car', 'Ca_09360_v3' => 'car', 'Ca_09361_v3' => 'car', 'CBR_g1001' => 'cbr', 'CBR_g3522' => 'cbr', 'Cc02_g07330' => 'ccan', 'Cc02_g33510' => 'ccan', 'Cc05_g04230' => 'ccan', 'CDE03G0226' => 'cde', 'CDE04G1806' => 'cde', 'CDE07G0618' => 'cde', 'Cfa001415' => 'cfa', 'Cfa015110' => 'cfa', 'Cfa026924' => 'cfa', 'Ciclev10002100m.g' => 'ccl', 'Ciclev10032419m.g' => 'ccl', 'CiPaw.01G292200' => 'cil', 'CiPaw.02G187300' => 'cil', 'CiPaw.05G163100' => 'cil', 'ClCG03G016960' => 'cla', 'ClCG11G006590' => 'cla', 'COL.COLO4_13480' => 'col', 'COL.COLO4_25522' => 'col', 'Cpa.g.sc48.41' => 'cpa', 'Cpa.g.sc776.6' => 'cpa', 'Cre17.g722700' => 'cre', 'CsaV3_1G038980' => 'csa', 'CsaV3_6G001420' => 'csa', 'CSS0001800' => 'camsi', 'CSS0002569' => 'camsi', 'CSS0023450' => 'camsi', 'DCAR_022180' => 'dca', 'DCAR_024872' => 'dca', 'DCAR_027588' => 'dca', 'Dinv16263' => 'din', 'Dinv23946' => 'din', 'Dinv40279' => 'din', 'Duzib106G0506' => 'dzi', 'Duzib106G0565' => 'dzi', 'Duzib106G1433' => 'dzi', 'Duzib106G1630' => 'dzi', 'Duzib106G1704' => 'dzi', 'Duzib114G0689' => 'dzi', 'Duzib177G0896' => 'dzi', 'ECA233G1873' => 'eca', 'ECA238G2130' => 'eca', 'ECA246G2650' => 'eca', 'EL10Ac2g04688' => 'bvu', 'EL10Ac4g09344' => 'bvu', 'Eucgr.G02991' => 'egr', 'Eucgr.H04483' => 'egr', 'FAN01G0841' => 'fan', 'FAN02G1310' => 'fan', 'FAN03G2328' => 'fan', 'FAN05G1483' => 'fan', 'FAN05G4253' => 'fan', 'FAN06G3391' => 'fan', 'FAN06G4322' => 'fan', 'FAN09G0634' => 'fan', 'FAN10G0083' => 'fan', 'FAN14G1729' => 'fan', 'FAN14G5292' => 'fan', 'FvH4_6g05750' => 'fve', 'FvH4_7g23450' => 'fve', 'Glyma.02G251200' => 'gma', 'Glyma.03G238400' => 'gma', 'Glyma.10G154800' => 'gma', 'Glyma.14G065500' => 'gma', 'Glyma.19G235900' => 'gma', 'Glyma.20G233500' => 'gma', 'Gohir.A05G302300' => 'ghi', 'Gohir.A05G347300' => 'ghi', 'Gohir.A10G223500' => 'ghi', 'Gohir.A11G264400' => 'ghi', 'Gohir.A13G173700' => 'ghi', 'Gohir.D04G065000' => 'ghi', 'Gohir.D05G301800' => 'ghi', 'Gohir.D10G235900' => 'ghi', 'Gohir.D11G274600' => 'ghi', 'Gohir.D13G179400' => 'ghi', 'Gorai.007G296400' => 'gra', 'Gorai.009G319900' => 'gra', 'Gorai.011G269800' => 'gra', 'Gorai.012G073100' => 'gra', 'Gorai.013G204700' => 'gra', 'GSVIVG01000042001' => 'vvi', 'GSVIVG01016466001' => 'vvi', 'GSVIVG01023342001' => 'vvi', 'GSVIVG01036834001' => 'vvi', 'HanXRQChr08g0221211' => 'han', 'HanXRQChr14g0448761' => 'han', 'HanXRQChr15g0473061' => 'han', 'Haze_01563' => 'cav', 'Haze_17129' => 'cav', 'Hma1.2p1_0033F.1_g020140' => 'hma', 'Hma1.2p1_0039F.1_g024690' => 'hma', 'HPP92_003399' => 'vpl', 'HPP92_003418' => 'vpl', 'HPP92_006343' => 'vpl', 'HPP92_024134' => 'vpl', 'Hund07065' => 'sun', 'Hund13800' => 'sun', 'Hund16051' => 'sun', 'Hund21242' => 'sun', 'Lalb_Chr02g0148281' => 'lal', 'Lalb_Chr10g0104771' => 'lal', 'Lalb_Chr18g0045591' => 'lal', 'Lj1g0010880' => 'lja', 'Lj1g0022131' => 'lja', 'Lj5A537T14' => 'lonja', 'Lj5C537T3' => 'lonja', 'Lj8C78T3' => 'lonja', 'Lj9C31T1' => 'lonja', 'LjContig00141g0016830' => 'lja', 'Lsat_1_v5_gn_2_87721' => 'lsa', 'Lsat_1_v5_gn_3_98040' => 'lsa', 'Lsat_1_v5_gn_5_136000' => 'lsa', 'Lsat_1_v5_gn_8_14680' => 'lsa', 'Manes.07G120704' => 'mes', 'Manes.08G121400' => 'mes', 'Manes.09G166400' => 'mes', 'Manes.10G024700' => 'mes', 'Mapoly0005s0055' => 'mpo', 'MBI14_g09011_MAGBIO' => 'mbi', 'MBI17_g13558_MAGBIO' => 'mbi', 'MCO12G418' => 'mco', 'MD01G1140300' => 'mdo', 'MD04G1206000' => 'mdo', 'MD07G1204600' => 'mdo', 'MD12G1220100' => 'mdo', 'Medtr3g069150' => 'mtr', 'Medtr3g069170' => 'mtr', 'Medtr5g081040' => 'mtr', 'Medtr7g113620' => 'mtr', 'MELO3C008246.2' => 'cme', 'MELO3C015325.2' => 'cme', 'Migut.F01287' => 'egut', 'Migut.I00760' => 'egut', 'MSTRG.22749' => 'ama', 'MSTRG.261' => 'ama', 'MSTRG.8286' => 'ama', 'Nitab4.5_0000987g0040' => 'nta', 'Nitab4.5_0005388g0090' => 'nta', 'Nitab4.5_0008497g0010' => 'nta', 'Nitab4.5_0008497g0020' => 'nta', 'Nitab4.5_0008677g0010' => 'nta', 'Nn1g02215' => 'nnu', 'Nn2g11249' => 'nnu', 'Nn2g13497' => 'nnu', 'Nn3g20336' => 'nnu', 'Nn4g26240' => 'nnu', 'Oeu001519.1' => 'oeu', 'Oeu029692.2' => 'oeu', 'Os01g0610500' => 'osa', 'Os05g0455800' => 'osa', 'Peaxi162Scf00037g00230' => 'pax', 'Peaxi162Scf00164g01416' => 'pax', 'Peaxi162Scf00658g00313' => 'pax', 'PGR031G0270' => 'pgr', 'PGR083G2895' => 'pgr', 'PGR142G4126' => 'pgr', 'PGSC0003DMG400027135' => 'stu', 'PGSC0003DMG400028610' => 'stu', 'Phvul.001G237000' => 'pvu', 'Phvul.006G092500' => 'pvu', 'Phvul.007G180400' => 'pvu', 'Phvul.008G230200' => 'pvu', 'Potri.005G033900' => 'ptr', 'Potri.008G060300' => 'ptr', 'Potri.010G198100' => 'ptr', 'Potri.010G198300' => 'ptr', 'Potri.013G023400' => 'ptr', 'Pp3c1_31750' => 'ppa', 'Pp3c1_31760' => 'ppa', 'Pp3c4_14200' => 'ppa', 'PRCOL_00001434' => 'pco', 'Prupe.2G240900' => 'ppe', 'Prupe.6G326800' => 'ppe', 'Psat2g038920' => 'psa', 'Psat3g010720' => 'psa', 'Psat5g128720' => 'psa', 'PSO017G1346' => 'pso', 'PSO063G5958' => 'pso', 'PSO339G3649' => 'pso', 'PSO384G4711' => 'pso', 'QL03p041970' => 'qlo', 'QL08p061675' => 'qlo', 'RcHm_v2.0_Chr1g0368591' => 'rch', 'RcHm_v2.0_Chr3g0454661' => 'rch', 'Rhsim03G0136700' => 'rsi', 'Rhsim05G0142500' => 'rsi', 'Rhsim09G0168000' => 'rsi', 'Rhsim09G0168900' => 'rsi', 'Sabra05G0035900' => 'sbr', 'Sabra08G0044400' => 'sbr', 'Sabra10G0152600' => 'sbr', 'SalBow2G0074' => 'sbo', 'SalBow6G3204' => 'sbo', 'SalBow6G3476' => 'sbo', 'Sc09g0003210' => 'sci', 'Sc10g0001880' => 'sci', 'Sed0003628' => 'sed', 'Sed0004716' => 'sed', 'Sed0012888' => 'sed', 'SEGI_37536' => 'sgi', 'SEGI_40211' => 'sgi', 'SEGI_41301' => 'sgi', 'SGA_v2.0_scaffold2G00987' => 'sas', 'SGA_v2.0_scaffold37G14761' => 'sas', 'SHI03706' => 'shi', 'SMO304G0127' => 'smo', 'Solyc01g098900.3' => 'sly', 'Solyc05g052930.3' => 'sly', 'Sopen01g042440' => 'spe', 'Sopen05g031450' => 'spe', 'Sp2g20700' => 'spa', 'Sp3g04130' => 'spa', 'Sp4g22090' => 'spa', 'TAR362G0444' => 'tar', 'TAR365G0117' => 'tar', 'TAR633G0599' => 'tar', 'TAR633G1303' => 'tar', 'TAR636G1215' => 'tar', 'TAR636G1286' => 'tar', 'THA.LOC104802804' => 'tha', 'THA.LOC104808815' => 'tha', 'Thecc.05G304600' => 'tca', 'Thecc.10G034500' => 'tca', 'Thhalv10004745m.g' => 'esa', 'Thhalv10017061m.g' => 'esa', 'Thhalv10021283m.g' => 'esa', 'TPR.G10328' => 'tpr', 'TPR.G25857' => 'tpr', 'TPR.G33220' => 'tpr', 'TWI12G1165' => 'twi', 'TWI15G0806' => 'twi', 'TWI38G1695' => 'twi', 'TWI56G1185' => 'twi', 'unitig_0.g1112' => 'ugi', 'unitig_27.g25068' => 'ugi', 'vmacro07036' => 'vma', 'vmacro10211' => 'vma', 'vmacro19628' => 'vma', 'VMungo0540G2070' => 'vmu', 'VMungo0647G2156' => 'vmu', 'VMungo0720G2426' => 'vmu', 'VMungo1383G3669' => 'vmu', 'Zm00001eb161830' => 'zma', 'Zm00001eb289530' => 'zma', 'Zm00001eb358000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002081' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002081' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002081' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002081' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151