Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 2600.5 1361 100.0
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1964.5 1361 76.6
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1849.7 1362 71.1
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1785.0 1363 70.4
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1768.8 1365 69.7
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1737.2 1369 68.2
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1734.2 1362 67.4
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1723.0 1369 67.7
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1722.6 1367 67.8
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1718.0 1372 67.8
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1710.3 1371 67.1
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1705.3 1365 67.5
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1701.4 1364 67.2
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1688.3 1367 66.3
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1687.9 1363 65.6
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1682.9 1364 66.9
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1681.4 1369 66.0
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1656.0 1352 64.5
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1656.0 1352 64.4
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1637.9 1364 65.0
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1624.4 1397 64.9
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1620.9 1361 64.9
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1620.5 1406 64.2
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1604.3 1352 63.5
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1600.9 1376 63.7
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1598.2 1371 62.7
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1593.6 1365 63.1
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1592.8 1359 63.9
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1586.6 1371 62.9
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1582.0 1370 62.9
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1576.6 1379 62.9
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1570.1 1370 62.8
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1562.7 1362 61.8
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1560.8 1363 62.9
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1557.7 1364 62.8
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1551.2 1382 61.9
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1545.4 1361 61.9
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1536.2 1348 62.5
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1535.0 1364 61.5
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1531.5 1364 61.4
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1526.1 1378 60.9
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1526.1 1361 60.8
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1516.1 1360 61.5
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1515.4 1364 60.2
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1513.8 1382 60.3
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1512.7 1366 60.2
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1512.7 1361 59.5
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1507.7 1361 59.1
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1498.0 1365 59.6
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1493.4 1376 60.1
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1486.5 1364 60.0
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1483.4 1369 60.8
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1470.7 1369 58.7
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1467.2 1365 59.0
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1465.7 1416 58.4
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1459.5 1357 58.9
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1457.6 1309 62.3
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1452.2 1404 59.0
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1446.8 1340 60.6
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1444.9 1370 59.0
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1442.2 1342 59.7
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1442.2 1366 59.2
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1440.6 1225 63.7
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1439.9 1339 59.4
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1438.7 1354 58.3
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1436.4 1196 63.7
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1434.9 1293 60.0
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1431.0 1369 58.0
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1429.5 1367 57.6
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1427.2 1368 58.0
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1426.0 1367 58.7
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1423.3 1365 57.4
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1423.3 1364 58.1
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1421.4 1400 56.3
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1420.2 1339 58.8
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1419.8 1371 58.5
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1416.4 1340 59.0
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1412.9 1355 58.4
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1412.9 1342 58.9
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1407.1 1373 57.2
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1394.8 1375 57.8
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1392.1 1351 57.4
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1386.3 1379 56.7
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1363.6 1253 58.8
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1361.7 1371 55.7
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1340.9 1295 58.1
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1331.2 1305 57.2
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1312.0 1069 66.0
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1310.0 1424 54.4
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1262.3 1085 62.2
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1253.8 1096 61.6
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1253.8 1370 51.9
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1251.9 1365 53.3
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1246.1 1066 62.7
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1235.7 1381 52.7
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 0.0e+00 1221.8 1356 51.8
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1184.9 1063 60.7
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 0.0e+00 1167.5 1205 54.6
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1158.7 1373 50.0
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 0.0e+00 1153.7 984 64.1
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 0.0e+00 1142.5 1317 51.6
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 0.0e+00 1137.1 1375 51.1
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 1.1e-305 1053.9 951 59.3
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 4.8e-282 975.3 954 56.4
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.1e-270 934.9 776 63.9
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.0e-268 931.0 1028 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 7.6e-264 914.8 1415 42.3
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 3.5e-261 906.0 762 63.5
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.6e-261 905.6 1174 47.4
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 3.4e-248 862.8 1138 46.8
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.8e-247 859.4 723 61.3
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.4e-238 830.9 1489 38.3
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.4e-236 824.3 1064 48.6
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 1.2e-232 811.2 870 55.2
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.9e-231 806.6 837 54.2
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 3.4e-195 686.8 1190 38.4
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.6e-189 667.9 507 69.4
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 5.1e-175 619.8 461 70.9
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 6.9e-164 582.8 1541 31.0
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 9.9e-163 578.9 628 52.4
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 2.8e-149 534.3 410 69.0
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 8.4e-146 522.7 416 68.0
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 1.5e-118 432.2 322 71.4
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 5.5e-113 413.7 346 64.5
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.7e-99 366.7 326 60.1
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.8e-91 340.1 361 54.0
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 2.9e-90 338.2 1427 26.3
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 3.5e-83 314.7 457 43.1
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 3.9e-82 311.2 279 62.0
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 1.2e-70 273.1 1289 25.5
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 6.6e-58 230.7 607 34.4
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 1.5e-49 203.0 263 47.9
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 3.3e-41 175.3 156 57.1
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 7.6e-38 164.1 114 69.3
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 3.8e-37 161.8 232 43.5
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 3.5e-35 155.2 103 77.7
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 1.6e-32 146.4 82 86.6
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 2.6e-30 139.0 114 64.0
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.3e-26 126.7 196 44.9
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 4.3e-25 121.7 115 54.8
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.3e-21 110.2 87 60.9
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 4.8e-16 91.7 93 58.1
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 5.3e-15 88.2 79 58.2
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 5.3e-15 88.2 79 58.2
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 8.5e-13 80.9 71 57.7
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 1.0e-10 73.9 50 74.0
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 3.3e-09 68.9 85 44.7
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 1.7e-08 66.6 144 27.8
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 1.7e-08 66.6 59 64.4
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 3.1e-07 62.4 76 47.4
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 7.0e-07 61.2 134 27.6
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 9.1e-07 60.8 136 27.2
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 1.2e-06 60.5 136 26.5
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 2.0e-06 59.7 129 28.7
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 2.0e-06 59.7 129 27.1
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 2.6e-06 59.3 129 27.9
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 3.5e-06 58.9 134 26.9
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 3.5e-06 58.9 134 26.1
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 3.5e-06 58.9 164 27.4
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 3.5e-06 58.9 138 29.0
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 3.5e-06 58.9 134 26.1
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 4.5e-06 58.5 134 26.1
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 4.5e-06 58.5 129 26.4
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 7.7e-06 57.8 134 25.4
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 7.7e-06 57.8 131 27.5


User provided reference genes

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