Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25781 Nelumbo nucifera HOM05D002411 ORTHO05D002564 9.6e-59 229.9 115 100.0
Actinidia26723 Actinidia chinensis HOM05D002411 ORTHO05D002564 6.1e-13 77.8 96 52.1
Dinv44015 Davidia involucrata HOM05D002411 ORTHO05D002564 1.1e-11 73.6 99 50.5
MBI18_g24868_MAGBIO Magnolia biondii HOM05D002411 ORTHO05D002564 1.5e-11 73.2 100 49.0
Nn3g21516 Nelumbo nucifera HOM05D002411 ORTHO05D002564 1.5e-11 73.2 101 48.5
CSS0049508 Camellia sinensis var. sinensis HOM05D002411 ORTHO05D002564 2.0e-11 72.8 97 50.5
Hma1.2p1_0494F.1_g165240 Hydrangea macrophylla HOM05D002411 ORTHO05D002564 2.5e-11 72.4 112 42.9
CSS0009091 Camellia sinensis var. sinensis HOM05D002411 ORTHO05D002564 7.4e-11 70.9 99 49.5
CSS0018838 Camellia sinensis var. sinensis HOM05D002411 ORTHO05D002564 7.4e-11 70.9 99 49.5
GSVIVG01028031001 Vitis vinifera HOM05D002411 ORTHO05D002564 7.4e-11 70.9 100 48.0
CDE09G0032 Ceratophyllum demersum HOM05D002411 ORTHO05D002564 9.7e-11 70.5 113 43.4
TAR636G1694 Trochodendron aralioides HOM05D000115 ORTHO05D002564 1.3e-10 70.1 114 44.7
Dinv33061 Davidia involucrata HOM05D002411 ORTHO05D002564 1.7e-10 69.7 99 47.5
Rhsim01G0286100 Rhododendron simsii HOM05D002411 ORTHO05D002564 1.7e-10 69.7 112 42.9
vmacro15152 Vaccinium macrocarpon HOM05D002411 ORTHO05D002564 2.2e-10 69.3 112 42.9
CiPaw.08G094500 Carya illinoinensis HOM05D002411 ORTHO05D002564 4.8e-10 68.2 99 47.5
Cfa005901 Carpinus fangiana HOM05D002411 ORTHO05D002564 8.2e-10 67.4 100 46.0
CiPaw.07G110300 Carya illinoinensis HOM05D002411 ORTHO05D002564 8.2e-10 67.4 99 46.5
Haze_04951 Corylus avellana HOM05D002411 ORTHO05D002564 8.2e-10 67.4 100 46.0
Actinidia21041 Actinidia chinensis HOM05D002411 ORTHO05D002564 1.1e-09 67.0 85 51.8
Nitab4.5_0002433g0090 Nicotiana tabacum HOM05D002411 ORTHO05D002564 1.1e-09 67.0 99 47.5
CANSAT25G2573 Cannabis sativa HOM05D002411 ORTHO05D002564 1.4e-09 66.6 112 41.1
PGSC0003DMG400031814 Solanum tuberosum HOM05D002411 ORTHO05D002564 1.4e-09 66.6 99 46.5
Ciclev10021907m.g Citrus clementina HOM05D002411 ORTHO05D002564 1.8e-09 66.2 92 46.7
Lalb_Chr01g0021731 Lupinus albus HOM05D002411 ORTHO05D002564 1.8e-09 66.2 99 44.4
Nitab4.5_0001879g0140 Nicotiana tabacum HOM05D002411 ORTHO05D002564 1.8e-09 66.2 99 46.5
Solyc09g075200.4 Solanum lycopersicum HOM05D002411 ORTHO05D002564 1.8e-09 66.2 99 47.5
Sopen09g030020 Solanum pennellii HOM05D002411 ORTHO05D002564 1.8e-09 66.2 99 47.5
Cpa.g.sc9.252 Carica papaya HOM05D002411 ORTHO05D002564 2.4e-09 65.9 100 46.0
Glyma.03G253300 Glycine max HOM05D002411 ORTHO05D002564 2.4e-09 65.9 98 44.9
TAR365G0875 Trochodendron aralioides HOM05D002411 ORTHO05D002564 2.4e-09 65.9 68 60.3
FAN27G3356 Fragaria x ananassa HOM05D002411 ORTHO05D002564 4.1e-09 65.1 99 46.5
Glyma.19G250800 Glycine max HOM05D002411 ORTHO05D002564 5.3e-09 64.7 98 43.9
VMungo0540G1341 Vigna mungo HOM05D002411 ORTHO05D002564 5.3e-09 64.7 98 42.9
ECA236G3487 Erigeron canadensis HOM05D002411 ORTHO05D002564 6.9e-09 64.3 99 44.4
FAN20G1605 Fragaria x ananassa HOM05D002411 ORTHO05D002564 6.9e-09 64.3 99 46.5
FAN24G2234 Fragaria x ananassa HOM05D002411 ORTHO05D002564 6.9e-09 64.3 99 46.5
Potri.002G203600 Populus trichocarpa HOM05D002411 ORTHO05D002564 9.1e-09 63.9 112 38.4
Prupe.8G262900 Prunus persica HOM05D002411 ORTHO05D002564 9.1e-09 63.9 66 54.5
FvH4_2g25850 Fragaria vesca HOM05D002411 ORTHO05D002564 1.2e-08 63.5 99 46.5
FAN15G0253 Fragaria x ananassa HOM05D002411 ORTHO05D002564 1.2e-08 63.5 98 44.9
RcHm_v2.0_Chr6g0294181 Rosa chinensis HOM05D002411 ORTHO05D002564 1.5e-08 63.2 99 45.5
Cc01_g20950 Coffea canephora HOM05D002411 ORTHO05D002564 2.0e-08 62.8 99 44.4
CsaV3_4G000860 Cucumis sativus L. HOM05D002411 ORTHO05D002564 2.6e-08 62.4 65 52.3
ClCG10G011010 Citrullus lanatus HOM05D002411 ORTHO05D002564 3.4e-08 62.0 65 52.3
MELO3C017951.2 Cucumis melo HOM05D002411 ORTHO05D002564 3.4e-08 62.0 65 52.3
Phvul.006G108000 Phaseolus vulgaris HOM05D002411 ORTHO05D002564 3.4e-08 62.0 98 40.8
Ca_09178_v3 Cicer arietinum L. HOM05D002411 ORTHO05D002564 4.5e-08 61.6 99 42.4
QL12p028301 Quercus lobata HOM05D002411 ORTHO05D002564 5.9e-08 61.2 112 40.2
Eucgr.K03491 Eucalyptus grandis HOM05D002411 ORTHO05D002564 7.7e-08 60.8 66 54.5
Atru.chr5.1134 Acer truncatum HOM05D002411 ORTHO05D002564 1.0e-07 60.5 92 43.5
Manes.01G220300 Manihot esculenta HOM05D002411 ORTHO05D002564 1.0e-07 60.5 99 42.4
Migut.D00145 Erythranthe guttata HOM05D002411 ORTHO05D002564 1.3e-07 60.1 99 43.4
Lj1g0019364 Lotus japonicus HOM05D002411 ORTHO05D002564 1.3e-07 60.1 99 41.4
Psat3g021800 Pisum sativum HOM05D002411 ORTHO05D002564 2.9e-07 58.9 99 40.4
Sed0023774 Sechium edule HOM05D002411 ORTHO05D002564 3.8e-07 58.5 65 47.7
Medtr7g108715 Medicago truncatula HOM05D002411 ORTHO05D002564 5.0e-07 58.2 101 40.6
Potri.014G127800 Populus trichocarpa HOM05D002411 ORTHO05D002564 5.0e-07 58.2 98 40.8
COL.COLO4_23332 Corchorus olitorius HOM05D002411 ORTHO05D002564 6.5e-07 57.8 113 38.9
Oeu024405.1 Olea europaea HOM05D002411 ORTHO05D002564 6.5e-07 57.8 101 44.6
Rhsim01G0286000 Rhododendron simsii HOM05D002411 ORTHO05D002564 8.5e-07 57.4 122 35.2
arahy.Tifrunner.gnm1.ann1.Q3TEZS Arachis hypogaea HOM05D002411 ORTHO05D002564 1.1e-06 57.0 108 40.7
Gohir.A12G129800 Gossypium hirsutum HOM05D002411 ORTHO05D002564 1.1e-06 57.0 113 38.9
Gohir.D12G133600 Gossypium hirsutum HOM05D002411 ORTHO05D002564 1.1e-06 57.0 113 38.9
Gorai.008G144600 Gossypium raimondii HOM05D002411 ORTHO05D002564 1.1e-06 57.0 113 38.9
Lj1A23T83 Lonicera japonica HOM05D002411 ORTHO05D002564 1.1e-06 57.0 111 36.9
Sed0006475 Sechium edule HOM05D002411 ORTHO05D002564 1.1e-06 57.0 65 46.2
arahy.Tifrunner.gnm1.ann1.Q4WYMC Arachis hypogaea HOM05D002411 ORTHO05D002564 1.4e-06 56.6 98 40.8
MSTRG.21638 Avicennia marina HOM05D002411 ORTHO05D002564 1.4e-06 56.6 66 50.0
Medtr4g084990 Medicago truncatula HOM05D002411 ORTHO05D002564 1.4e-06 56.6 100 40.0
Sc17g0003210 Simmondsia chinensis HOM05D002411 ORTHO05D002564 1.9e-06 56.2 111 39.6
SGA_v2.0_scaffold2G01389 Striga asiatica HOM05D002411 ORTHO05D002564 1.9e-06 56.2 66 50.0
Thecc.01G301800 Theobroma cacao HOM05D002411 ORTHO05D002564 1.9e-06 56.2 113 38.1
TWI23G0687 Tripterygium wilfordii HOM05D002411 ORTHO05D002564 1.9e-06 56.2 99 41.4
Ah.15g093130 Amaranthus hybridus HOM05D002411 ORTHO05D002564 3.2e-06 55.5 113 38.1
EL10Ac7g17527 Beta vulgaris HOM05D002411 ORTHO05D002564 3.2e-06 55.5 112 38.4
Duzib133G0160 Durio zibethinus HOM05D002411 ORTHO05D002564 4.2e-06 55.1 113 37.2
Lsat_1_v5_gn_8_164180 Lactuca sativa HOM05D002411 ORTHO05D002564 4.2e-06 55.1 98 39.8
SalBow3G2990 Salvia bowleyana HOM05D002411 ORTHO05D002564 4.2e-06 55.1 98 37.8
TPR.G9641 Trifolium pratense HOM05D002411 ORTHO05D002564 4.2e-06 55.1 99 41.4
Sp4g29510 Schrenkiella parvula HOM05D002411 ORTHO05D002564 7.2e-06 54.3 94 42.6
MD11G1308500 Malus domestica HOM05D002411 ORTHO05D002564 9.4e-06 53.9 112 38.4


User provided reference genes

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