Gene: Solyc09g075200.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc09g075200.4
  • Transcript Identifier Solyc09g075200.4.1
  • Gene Type Coding gene
  • Location SL4.0ch09 : 63190634-63196120 : negative

Gene Family Information

  • ID HOM05D002411
  • #Genes/#Species 281/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc09g075200.4.1
  • uniprot A0A3Q7I7F7
  • gene_id Solyc09g075200

Descriptions

  • Description U2 small nuclear ribonucleoprotein B (AHRD V3.3 *** A0A2U1L5Q9_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT2G47580
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT1G06960
GO:0000354
ISO
PLAZA Integrative Orthologycis assembly of pre-catalytic spliceosome AT2G30260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0030619
IBA
GOA DatabaseU1 snRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005685
IBA
GOA DatabaseU1 snRNP
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G47580
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G30260
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT2G30260
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G47580
GO:0005686
ISO
PLAZA Integrative OrthologyU2 snRNP AT2G30260
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G30260
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT2G30260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.1.1.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).protein factor (U1A)