Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 1.0e-196 689.9 344 100.0
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 8.4e-143 510.8 344 75.3
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 1.8e-113 413.3 361 62.3
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 1.9e-110 403.3 352 61.4
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 1.7e-98 363.6 344 56.7
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 1.7e-95 353.6 354 55.1
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 1.9e-94 350.1 354 54.5
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 9.4e-94 347.8 342 55.0
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 6.1e-93 345.1 345 55.4
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 1.4e-92 344.0 351 52.4
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 6.7e-92 341.7 342 52.3
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 3.3e-91 339.3 346 52.3
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 2.4e-89 333.2 346 52.9
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 3.1e-89 332.8 343 51.0
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 4.1e-89 332.4 348 52.3
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 1.6e-88 330.5 349 50.4
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 4.5e-88 328.9 351 50.4
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 5.9e-88 328.6 344 49.7
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 7.7e-88 328.2 363 52.6
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 7.7e-88 328.2 277 61.0
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 1.0e-87 327.8 343 51.9
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 1.7e-87 327.0 351 52.1
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 2.9e-87 326.2 349 53.3
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 2.9e-87 326.2 343 52.2
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 2.9e-87 326.2 345 51.0
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 8.5e-87 324.7 346 49.4
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 1.5e-86 323.9 251 64.1
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 2.5e-86 323.2 344 49.4
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 2.5e-86 323.2 351 49.9
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 9.4e-86 321.2 351 49.9
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 1.6e-85 320.5 344 49.1
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 3.6e-85 319.3 339 51.6
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 3.6e-85 319.3 350 50.6
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 4.7e-85 318.9 350 51.1
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 1.0e-84 317.8 348 50.9
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 1.4e-84 317.4 342 50.9
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 5.2e-84 315.5 348 49.4
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 5.7e-83 312.0 346 51.2
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 2.8e-82 309.7 354 50.8
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 2.8e-82 309.7 345 50.1
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 3.7e-82 309.3 350 50.9
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 4.8e-82 308.9 343 51.3
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 4.8e-82 308.9 351 47.9
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 3.1e-81 306.2 338 50.3
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 4.1e-81 305.8 345 47.2
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 5.4e-81 305.4 340 48.8
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 7.0e-81 305.1 342 50.0
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 7.0e-81 305.1 356 49.4
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 1.7e-79 300.4 200 71.5
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 2.9e-79 299.7 339 49.0
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 3.8e-79 299.3 353 46.2
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 2.5e-78 296.6 347 50.1
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 9.4e-78 294.7 268 59.3
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 1.2e-77 294.3 340 48.5
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 2.1e-77 293.5 349 48.7
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 1.0e-76 291.2 392 43.9
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 2.3e-76 290.0 261 57.9
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 2.0e-75 287.0 367 45.0
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 4.4e-75 285.8 330 49.4
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 3.7e-74 282.7 354 46.9
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 1.1e-73 281.2 346 46.5
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 3.1e-73 279.6 344 46.5
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 4.1e-73 279.3 342 48.0
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 1.6e-72 277.3 237 60.8
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 1.6e-72 277.3 244 55.7
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 4.5e-72 275.8 381 44.9
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 7.7e-72 275.0 358 45.8
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 7.7e-72 275.0 275 50.5
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 1.3e-71 274.2 347 45.2
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 3.8e-71 272.7 344 47.4
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 5.0e-71 272.3 277 51.3
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 1.1e-70 271.2 345 48.4
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 7.3e-70 268.5 351 47.0
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 9.5e-70 268.1 362 43.6
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 9.5e-70 268.1 321 46.4
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 1.6e-69 267.3 275 53.8
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.6e-69 266.2 323 46.4
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.6e-69 266.2 321 46.1
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 3.6e-69 266.2 321 46.4
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 6.1e-69 265.4 342 45.3
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 1.0e-68 264.6 326 46.6
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 1.4e-68 264.2 321 45.8
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.8e-68 263.8 315 46.0
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 3.4e-67 259.6 315 45.4
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 7.5e-67 258.5 238 54.2
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 1.8e-65 253.8 254 51.6
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 1.2e-64 251.1 327 46.2
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 1.6e-64 250.8 243 54.3
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 2.3e-63 246.9 207 59.9
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 1.1e-62 244.6 278 47.5
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 2.8e-61 240.0 252 53.2
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 8.0e-61 238.4 232 56.9
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 6.8e-60 235.3 309 44.7
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 1.5e-59 234.2 311 43.4
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 2.6e-59 233.4 339 42.2
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 2.6e-59 233.4 339 42.2
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 1.7e-58 230.7 277 45.8
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 2.2e-58 230.3 339 41.6
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 8.3e-58 228.4 345 41.7
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 1.6e-56 224.2 274 43.8
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 2.0e-56 223.8 268 45.5
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 1.0e-55 221.5 277 46.6
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 5.0e-55 219.2 310 40.3
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 1.9e-54 217.2 364 38.7
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 3.1e-52 209.9 290 43.1
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 1.2e-48 198.0 200 50.5
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 2.1e-48 197.2 210 52.9
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 6.0e-48 195.7 197 49.2
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 6.0e-48 195.7 227 48.5
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 3.0e-47 193.4 225 47.1
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 9.5e-46 188.3 149 59.1
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 8.9e-44 181.8 225 46.2
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.2e-43 181.4 225 45.8
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 1.5e-43 181.0 203 46.8
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 7.1e-41 172.2 338 32.8
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 2.4e-36 157.1 135 55.6
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 1.2e-35 154.8 198 40.9
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 2.6e-35 153.7 174 47.7
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.3e-34 151.4 142 54.2
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 1.4e-33 147.9 175 48.0
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 1.0e-31 141.7 121 56.2
Nn1g01031 Nelumbo nucifera HOM05D006444 ORTHO05D007748 8.7e-31 138.7 78 87.2
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 6.4e-26 122.5 177 40.1
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 5.6e-22 109.4 86 64.0
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 6.4e-18 95.9 78 62.8
Cre01.g021850 Chlamydomonas reinhardtii HOM05D005236 ORTHO05D006557 1.1e-14 85.1 181 33.7
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 3.1e-12 77.0 200 31.0


User provided reference genes

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