Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 3.7e-67 258.1 131 100.0
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 5.4e-58 227.6 131 88.5
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 7.8e-57 223.8 131 87.8
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.3e-56 223.0 131 87.0
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.1e-55 219.9 131 84.0
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.5e-55 219.5 131 84.7
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.5e-55 219.5 131 84.7
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 2.5e-55 218.8 131 86.3
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 3.3e-55 218.4 131 84.7
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 4.3e-55 218.0 131 86.3
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 5.6e-55 217.6 131 84.0
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 9.5e-55 216.9 131 83.2
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 2.1e-54 215.7 130 85.4
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.1e-54 215.7 131 83.2
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.1e-54 215.7 131 83.2
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 2.1e-54 215.7 131 87.0
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 3.6e-54 214.9 133 84.2
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 3.6e-54 214.9 131 82.4
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 3.6e-54 214.9 128 84.4
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 3.6e-54 214.9 128 84.4
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 3.6e-54 214.9 128 84.4
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 6.2e-54 214.2 131 86.3
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 8.1e-54 213.8 131 82.4
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 1.4e-53 213.0 131 82.4
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.4e-53 213.0 131 82.4
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.8e-53 212.6 131 83.2
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 2.3e-53 212.2 131 81.7
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 3.1e-53 211.8 127 83.5
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 4.0e-53 211.5 131 82.4
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 8.9e-53 210.3 131 83.2
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 8.9e-53 210.3 131 82.4
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.5e-52 209.5 131 84.7
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.5e-52 209.5 131 82.4
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 1.5e-52 209.5 129 83.7
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.0e-52 209.1 128 82.8
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 4.4e-52 208.0 131 82.4
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 4.4e-52 208.0 131 82.4
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 5.8e-52 207.6 135 81.5
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 9.9e-52 206.8 131 79.4
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 2.2e-51 205.7 131 81.7
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 2.2e-51 205.7 131 80.9
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 2.9e-51 205.3 128 82.8
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 3.7e-51 204.9 132 81.8
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 3.7e-51 204.9 126 81.7
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 3.7e-51 204.9 131 78.6
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 4.9e-51 204.5 131 80.9
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 4.9e-51 204.5 149 73.8
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.4e-50 203.0 132 81.1
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 1.9e-50 202.6 132 80.3
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 1.9e-50 202.6 138 76.1
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 2.4e-50 202.2 126 81.0
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 2.4e-50 202.2 126 80.2
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 3.2e-50 201.8 132 81.1
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 9.2e-50 200.3 129 80.6
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 9.2e-50 200.3 126 81.0
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 1.2e-49 199.9 129 80.6
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 1.2e-49 199.9 129 80.6
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 1.2e-49 199.9 131 77.1
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.6e-49 199.5 126 80.2
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.6e-49 199.5 129 79.8
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 1.6e-49 199.5 126 79.4
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.5e-49 198.4 131 80.2
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 7.8e-49 197.2 126 79.4
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 2.3e-48 195.7 131 74.8
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 3.0e-48 195.3 129 77.5
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 6.6e-48 194.1 126 78.6
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 6.6e-48 194.1 126 78.6
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 6.6e-48 194.1 126 77.0
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.1e-47 193.4 126 78.6
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 1.1e-47 193.4 132 75.8
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.5e-47 193.0 126 76.2
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 2.5e-47 192.2 126 77.0
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.5e-47 192.2 126 77.0
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 2.5e-47 192.2 129 79.1
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 3.3e-47 191.8 169 65.1
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 7.3e-47 190.7 132 74.2
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 1.2e-46 189.9 126 75.4
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 1.2e-46 189.9 132 75.0
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 1.2e-46 189.9 142 72.5
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 1.6e-46 189.5 126 77.0
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 1.6e-46 189.5 124 78.2
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 1.6e-46 189.5 109 85.3
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 3.6e-46 188.3 127 76.4
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 4.7e-46 188.0 129 75.2
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 4.7e-46 188.0 124 76.6
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 4.7e-46 188.0 126 75.4
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 1.1e-45 186.8 107 86.0
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 1.4e-45 186.4 125 74.4
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 1.8e-45 186.0 134 71.6
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.4e-45 185.7 131 72.5
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 3.1e-45 185.3 133 73.7
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 4.0e-45 184.9 131 77.9
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 5.2e-45 184.5 132 72.7
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 5.2e-45 184.5 132 73.5
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 8.9e-45 183.7 127 73.2
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 1.2e-44 183.3 126 73.0
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 5.8e-44 181.0 132 72.0
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.7e-43 179.5 161 66.5
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 2.2e-43 179.1 124 75.0
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 4.2e-42 174.9 122 71.3
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.2e-41 173.3 102 81.4
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.6e-41 172.9 114 76.3
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.7e-40 169.5 100 81.0
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.7e-40 169.5 95 86.3
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 6.6e-40 167.5 172 55.8
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 1.1e-39 166.8 132 65.2
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 1.1e-39 166.8 131 71.8
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.1e-39 166.8 131 67.2
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.9e-39 166.0 120 72.5
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 5.6e-39 164.5 127 63.8
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 7.3e-39 164.1 113 70.8
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 9.6e-39 163.7 126 66.7
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 1.3e-38 163.3 106 79.2
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 1.6e-38 162.9 128 62.5
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 1.6e-38 162.9 105 71.4
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.6e-38 162.9 105 71.4
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 1.6e-38 162.9 128 62.5
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.6e-38 162.9 105 71.4
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 1.6e-38 162.9 128 62.5
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 1.6e-38 162.9 105 71.4
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.6e-38 161.8 92 85.9
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 1.1e-37 160.2 127 62.2
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 1.1e-37 160.2 123 65.9
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 3.1e-37 158.7 121 63.6
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 5.3e-37 157.9 108 70.4
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.5e-36 156.4 110 65.5
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 2.0e-36 156.0 98 80.6
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 2.6e-36 155.6 128 59.4
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.4e-36 155.2 113 65.5
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 9.9e-36 153.7 160 54.4
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.7e-35 152.9 129 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 8.4e-35 150.6 124 58.1
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.4e-34 149.8 124 58.1
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 9.3e-34 147.1 87 80.5
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 2.1e-33 146.0 94 77.7
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 1.0e-32 143.7 101 66.3
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.3e-32 143.3 82 87.8
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 3.9e-32 141.7 92 77.2
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 5.1e-32 141.4 126 62.7
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.5e-31 139.0 126 62.7
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 3.6e-30 135.2 106 61.3
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 1.8e-29 132.9 130 57.7
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 5.3e-29 131.3 83 80.7
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 1.9e-26 122.9 78 76.9
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.8e-24 116.3 69 81.2
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 3.0e-24 115.5 63 82.5
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 3.9e-24 115.2 76 72.4
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 4.3e-23 111.7 109 49.5
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 7.4e-23 110.9 95 60.0
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 2.8e-22 109.0 61 86.9
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 4.8e-22 108.2 90 56.7
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 2.2e-19 99.4 123 49.6
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 3.2e-18 95.5 103 42.7
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 4.6e-17 91.7 52 86.5
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 1.0e-16 90.5 89 49.4
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 1.8e-13 79.7 114 40.4
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.3e-11 73.6 67 58.2
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 1.4e-10 70.1 49 73.5
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 1.9e-10 69.7 93 36.6
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 3.5e-09 65.5 38 84.2
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 2.8e-06 55.8 90 33.3


User provided reference genes

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