Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25536 Nelumbo nucifera HOM05D003151 ORTHO05D003723 3.3e-71 271.6 131 100.0
Nn8g38896 Nelumbo nucifera HOM05D003151 ORTHO05D003723 1.0e-19 100.5 83 66.3
Nn8g39131 Nelumbo nucifera HOM05D003151 ORTHO05D003723 1.9e-18 96.3 82 62.2
TAR383G0148 Trochodendron aralioides HOM05D003151 ORTHO05D003723 1.9e-15 86.3 81 54.3
Aqoxy7G01240 Aquilegia oxysepala HOM05D003151 ORTHO05D003723 4.3e-15 85.1 49 79.6
TAR626G1007 Trochodendron aralioides HOM05D003151 ORTHO05D003723 7.4e-15 84.3 77 54.5
vmacro06284 Vaccinium macrocarpon HOM05D003151 ORTHO05D003723 1.3e-14 83.6 61 68.9
Lj2g0012329 Lotus japonicus HOM05D003151 ORTHO05D003723 1.6e-14 83.2 51 72.5
Actinidia25258 Actinidia chinensis HOM05D003151 ORTHO05D003723 2.8e-14 82.4 70 58.6
Ciclev10008864m.g Citrus clementina HOM05D003151 ORTHO05D003723 2.8e-14 82.4 50 76.0
Nitab4.5_0006935g0010 Nicotiana tabacum HOM05D003151 ORTHO05D003723 2.8e-14 82.4 83 56.6
MD02G1076800 Malus domestica HOM05D003151 ORTHO05D003723 3.7e-14 82.0 51 72.5
MD15G1205500 Malus domestica HOM05D003151 ORTHO05D003723 3.7e-14 82.0 51 72.5
Nitab4.5_0010222g0030 Nicotiana tabacum HOM05D003151 ORTHO05D003723 3.7e-14 82.0 81 55.6
TWI32G1006 Tripterygium wilfordii HOM05D003151 ORTHO05D003723 3.7e-14 82.0 48 79.2
TWI34G0516 Tripterygium wilfordii HOM05D003151 ORTHO05D003723 3.7e-14 82.0 48 79.2
MSTRG.17772 Avicennia marina HOM05D003151 ORTHO05D003723 4.8e-14 81.6 48 81.2
CANSAT56G1065 Cannabis sativa HOM05D003151 ORTHO05D003723 4.8e-14 81.6 67 61.2
CAN.G371.125 Capsicum annuum HOM05D003151 ORTHO05D003723 4.8e-14 81.6 48 79.2
CiPaw.03G217400 Carya illinoinensis HOM05D003151 ORTHO05D003723 4.8e-14 81.6 53 75.5
CANSAT56G2773 Cannabis sativa HOM05D003151 ORTHO05D003723 6.3e-14 81.3 67 61.2
Cc06_g11280 Coffea canephora HOM05D003151 ORTHO05D003723 6.3e-14 81.3 48 79.2
Manes.05G000800 Manihot esculenta HOM05D003151 ORTHO05D003723 6.3e-14 81.3 48 81.2
Manes.01G223600 Manihot esculenta HOM05D003151 ORTHO05D003723 8.2e-14 80.9 48 79.2
Oeu034043.1 Olea europaea HOM05D003151 ORTHO05D003723 8.2e-14 80.9 48 79.2
Nn3g21857 Nelumbo nucifera HOM05D003151 ORTHO05D003723 1.1e-13 80.5 68 58.8
MSTRG.6051 Avicennia marina HOM05D003151 ORTHO05D003723 1.4e-13 80.1 48 79.2
Gohir.D13G199300 Gossypium hirsutum HOM05D003151 ORTHO05D003723 1.4e-13 80.1 46 80.4
Peaxi162Scf01318g00001 Petunia axillaris HOM05D003151 ORTHO05D003723 1.4e-13 80.1 78 57.7
Haze_25901 Corylus avellana HOM05D003151 ORTHO05D003723 1.8e-13 79.7 49 73.5
Dinv42311 Davidia involucrata HOM05D003151 ORTHO05D003723 1.8e-13 79.7 76 55.3
QL02p062866 Quercus lobata HOM05D003151 ORTHO05D003723 1.8e-13 79.7 48 72.9
SalBow6G4675 Salvia bowleyana HOM05D003151 ORTHO05D003723 1.8e-13 79.7 48 79.2
Oeu006976.1 Olea europaea HOM05D003151 ORTHO05D003723 2.4e-13 79.3 48 77.1
PSO063G1447 Papaver somniferum HOM05D003151 ORTHO05D003723 2.4e-13 79.3 49 77.6
PSO832G3392 Papaver somniferum HOM05D003151 ORTHO05D003723 2.4e-13 79.3 49 77.6
Cfa003099 Carpinus fangiana HOM05D003151 ORTHO05D003723 3.1e-13 79.0 49 73.5
Duzib168G0375 Durio zibethinus HOM05D003151 ORTHO05D003723 3.1e-13 79.0 47 76.6
Nn6g35445 Nelumbo nucifera HOM05D003151 ORTHO05D003723 3.1e-13 79.0 83 50.6
Peaxi162Scf00354g00026 Petunia axillaris HOM05D003151 ORTHO05D003723 3.1e-13 79.0 51 76.5
Dinv36756 Davidia involucrata HOM05D003151 ORTHO05D003723 4.1e-13 78.6 64 60.9
Gorai.013G228000 Gossypium raimondii HOM05D003151 ORTHO05D003723 4.1e-13 78.6 46 78.3
Prupe.7G211600 Prunus persica HOM05D003151 ORTHO05D003723 4.1e-13 78.6 51 70.6
CAN.G771.2 Capsicum annuum HOM05D003151 ORTHO05D003723 5.3e-13 78.2 83 51.8
Cpa.g.c31168 Carica papaya HOM05D003151 ORTHO05D003723 5.3e-13 78.2 76 55.3
Duzib187G1696 Durio zibethinus HOM05D003151 ORTHO05D003723 5.3e-13 78.2 47 76.6
Gorai.004G284000 Gossypium raimondii HOM05D003151 ORTHO05D003723 5.3e-13 78.2 50 72.0
PGSC0003DMG400007756 Solanum tuberosum HOM05D003151 ORTHO05D003723 5.3e-13 78.2 48 75.0
Dinv32123 Davidia involucrata HOM05D003151 ORTHO05D003723 6.9e-13 77.8 64 60.9
HanXRQChr10g0319261 Helianthus annuus HOM05D003151 ORTHO05D003723 6.9e-13 77.8 79 54.4
Migut.J00599 Erythranthe guttata HOM05D003151 ORTHO05D003723 9.0e-13 77.4 48 75.0
Gohir.A13G193500 Gossypium hirsutum HOM05D003151 ORTHO05D003723 9.0e-13 77.4 46 78.3
Rhsim03G0233200 Rhododendron simsii HOM05D003151 ORTHO05D003723 9.0e-13 77.4 48 75.0
Thecc.09G091100 Theobroma cacao HOM05D003151 ORTHO05D003723 9.0e-13 77.4 47 76.6
GSVIVG01015216001 Vitis vinifera HOM05D003151 ORTHO05D003723 9.0e-13 77.4 44 79.5
Glyma.05G222300 Glycine max HOM05D003151 ORTHO05D003723 1.2e-12 77.0 68 61.8
SGA_v2.0_scaffold62G21599 Striga asiatica HOM05D003151 ORTHO05D003723 1.2e-12 77.0 48 79.2
unitig_27.g24726 Utricularia gibba HOM05D003151 ORTHO05D003723 1.2e-12 77.0 77 51.9
Gohir.A08G245300 Gossypium hirsutum HOM05D003151 ORTHO05D003723 1.5e-12 76.6 48 72.9
Gohir.D05G030900 Gossypium hirsutum HOM05D003151 ORTHO05D003723 1.5e-12 76.6 47 72.3
Gorai.009G031100 Gossypium raimondii HOM05D003151 ORTHO05D003723 1.5e-12 76.6 47 72.3
Hma1.2p1_0800F.1_g220060 Hydrangea macrophylla HOM05D003151 ORTHO05D003723 1.5e-12 76.6 48 72.9
Sc08g0008410 Simmondsia chinensis HOM05D003151 ORTHO05D003723 2.0e-12 76.3 80 56.2
CSS0011012 Camellia sinensis var. sinensis HOM05D003151 ORTHO05D003723 2.6e-12 75.9 83 50.6
CSS0013498 Camellia sinensis var. sinensis HOM05D003151 ORTHO05D003723 2.6e-12 75.9 83 50.6
Gohir.A05G029400 Gossypium hirsutum HOM05D003151 ORTHO05D003723 2.6e-12 75.9 47 72.3
Glyma.08G029000 Glycine max HOM05D003151 ORTHO05D003723 3.4e-12 75.5 51 72.5
COL.COLO4_18213 Corchorus olitorius HOM05D003151 ORTHO05D003723 4.5e-12 75.1 47 72.3
Psat7g020200 Pisum sativum HOM05D003151 ORTHO05D003723 4.5e-12 75.1 49 73.5
Sabra06G0119300 Salix brachista HOM05D003151 ORTHO05D003723 5.9e-12 74.7 48 72.9
TPR.G35502 Trifolium pratense HOM05D003151 ORTHO05D003723 5.9e-12 74.7 52 69.2
Lsat_1_v5_gn_5_145481 Lactuca sativa HOM05D003151 ORTHO05D003723 1.0e-11 73.9 57 63.2
Potri.006G150600 Populus trichocarpa HOM05D003151 ORTHO05D003723 1.0e-11 73.9 48 70.8
Psat1g050280 Pisum sativum HOM05D003151 ORTHO05D003723 1.3e-11 73.6 79 53.2
TPR.G25452 Trifolium pratense HOM05D003151 ORTHO05D003723 1.3e-11 73.6 71 54.9
Eucgr.C00902 Eucalyptus grandis HOM05D003151 ORTHO05D003723 1.7e-11 73.2 53 67.9
Phvul.002G304000 Phaseolus vulgaris HOM05D003151 ORTHO05D003723 1.7e-11 73.2 52 65.4
Solyc07g021750.1 Solanum lycopersicum HOM05D003151 ORTHO05D003723 1.7e-11 73.2 48 70.8
ClCG03G015690 Citrullus lanatus HOM05D003151 ORTHO05D003723 2.9e-11 72.4 51 64.7
Medtr8g101570 Medicago truncatula HOM05D003151 ORTHO05D003723 2.9e-11 72.4 51 64.7
PGR142G4167 Punica granatum HOM05D003151 ORTHO05D003723 2.9e-11 72.4 50 70.0
FvH4_1g07230 Fragaria vesca HOM05D003151 ORTHO05D003723 3.8e-11 72.0 47 68.1
FAN19G2283 Fragaria x ananassa HOM05D003151 ORTHO05D003723 3.8e-11 72.0 47 68.1
Lsat_1_v5_gn_7_37501 Lactuca sativa HOM05D003151 ORTHO05D003723 3.8e-11 72.0 75 52.0
Potri.018G066400 Populus trichocarpa HOM05D003151 ORTHO05D003723 3.8e-11 72.0 48 68.8
Sabra18G0058900 Salix brachista HOM05D003151 ORTHO05D003723 3.8e-11 72.0 48 68.8
SabraUnG0005300 Salix brachista HOM05D003151 ORTHO05D003723 3.8e-11 72.0 48 68.8
Ah.14g085250 Amaranthus hybridus HOM05D003151 ORTHO05D003723 5.0e-11 71.6 118 41.5
CDE05G2742 Ceratophyllum demersum HOM05D003151 ORTHO05D003723 5.0e-11 71.6 48 66.7
MELO3C015459.2 Cucumis melo HOM05D003151 ORTHO05D003723 5.0e-11 71.6 50 66.0
CsaV3_1G040320 Cucumis sativus L. HOM05D003151 ORTHO05D003723 5.0e-11 71.6 50 66.0
ECA234G2307 Erigeron canadensis HOM05D003151 ORTHO05D003723 5.0e-11 71.6 47 72.3
Lj4g0006501 Lotus japonicus HOM05D003151 ORTHO05D003723 5.0e-11 71.6 76 50.0
Phvul.004G170900 Phaseolus vulgaris HOM05D003151 ORTHO05D003723 5.0e-11 71.6 51 66.7
Sed0000540 Sechium edule HOM05D003151 ORTHO05D003723 5.0e-11 71.6 69 53.6
Sopen07g011620 Solanum pennellii HOM05D003151 ORTHO05D003723 5.0e-11 71.6 83 50.6
Aa31LG8G16580 Aethionema arabicum HOM05D003151 ORTHO05D003723 6.5e-11 71.2 54 57.4
MSTRG.19521 Avicennia marina HOM05D003151 ORTHO05D003723 6.5e-11 71.2 84 51.2
Ca_25622_v3 Cicer arietinum L. HOM05D003151 ORTHO05D003723 8.4e-11 70.9 79 51.9
ECA240G2674 Erigeron canadensis HOM05D003151 ORTHO05D003723 8.4e-11 70.9 55 58.2
FAN26G1922 Fragaria x ananassa HOM05D003151 ORTHO05D003723 8.4e-11 70.9 47 66.0
FAN26G3264 Fragaria x ananassa HOM05D003151 ORTHO05D003723 8.4e-11 70.9 47 66.0
Glyma.07G129300 Glycine max HOM05D003151 ORTHO05D003723 8.4e-11 70.9 53 64.2
RcHm_v2.0_Chr2g0093131 Rosa chinensis HOM05D003151 ORTHO05D003723 8.4e-11 70.9 75 50.7
THA.LOC104803976 Tarenaya hassleriana HOM05D003151 ORTHO05D003723 8.4e-11 70.9 53 58.5
AUR62033993 Chenopodium quinoa HOM05D003151 ORTHO05D003723 1.1e-10 70.5 82 50.0
DCAR_024687 Daucus carota HOM05D003151 ORTHO05D003723 1.1e-10 70.5 77 51.9
Lalb_Chr05g0223631 Lupinus albus HOM05D003151 ORTHO05D003723 1.1e-10 70.5 76 51.3
CDE05G0195 Ceratophyllum demersum HOM05D003151 ORTHO05D003723 1.4e-10 70.1 48 64.6
Lalb_Chr24g0393781 Lupinus albus HOM05D003151 ORTHO05D003723 1.4e-10 70.1 41 78.0
Sed0008525 Sechium edule HOM05D003151 ORTHO05D003723 1.4e-10 70.1 53 58.5
Ca_17403_v3 Cicer arietinum L. HOM05D003151 ORTHO05D003723 1.9e-10 69.7 51 64.7
Sp7g27430 Schrenkiella parvula HOM05D003151 ORTHO05D003723 1.9e-10 69.7 59 57.6
arahy.Tifrunner.gnm1.ann1.N198RB Arachis hypogaea HOM05D003151 ORTHO05D003723 2.5e-10 69.3 83 49.4
Medtr6g092660 Medicago truncatula HOM05D003151 ORTHO05D003723 2.5e-10 69.3 48 68.8
EL10Ac8g19236 Beta vulgaris HOM05D003151 ORTHO05D003723 3.2e-10 68.9 45 68.9
AUR62027484 Chenopodium quinoa HOM05D003151 ORTHO05D003723 4.2e-10 68.6 75 53.3
VMungo0464G1479 Vigna mungo HOM05D003151 ORTHO05D003723 4.2e-10 68.6 51 64.7
BcaB03g16745 Brassica carinata HOM05D003151 ORTHO05D003723 5.5e-10 68.2 49 67.3
BcaNung00481 Brassica carinata HOM05D003151 ORTHO05D003723 5.5e-10 68.2 48 66.7
A03p59000 Brassica napus HOM05D003151 ORTHO05D003723 5.5e-10 68.2 48 66.7
Carub.0003s3386 Capsella rubella HOM05D003151 ORTHO05D003723 5.5e-10 68.2 55 60.0
Lj7P674T24 Lonicera japonica HOM05D003151 ORTHO05D003723 5.5e-10 68.2 76 50.0
AT2G19570 Arabidopsis thaliana HOM05D003151 ORTHO05D003723 7.2e-10 67.8 74 48.6
C07p57040 Brassica napus HOM05D003151 ORTHO05D003723 7.2e-10 67.8 48 66.7
BolC7t46173H Brassica oleracea HOM05D003151 ORTHO05D003723 7.2e-10 67.8 48 66.7
BraA03t14959Z Brassica rapa HOM05D003151 ORTHO05D003723 7.2e-10 67.8 48 66.7
ATR0716G029 Amborella trichopoda HOM05D003151 ORTHO05D003723 9.3e-10 67.4 62 56.5
VMungo0251G0329 Vigna mungo HOM05D003151 ORTHO05D003723 9.3e-10 67.4 52 61.5
AL7G22810 Arabidopsis lyrata HOM05D003151 ORTHO05D003723 1.2e-09 67.0 48 68.8
A07p01170 Brassica napus HOM05D003151 ORTHO05D003723 1.2e-09 67.0 49 65.3
AL3G48670 Arabidopsis lyrata HOM05D003151 ORTHO05D003723 1.6e-09 66.6 55 56.4
BcaC06g36599 Brassica carinata HOM05D003151 ORTHO05D003723 1.6e-09 66.6 77 48.1
BcaC06g36600 Brassica carinata HOM05D003151 ORTHO05D003723 1.6e-09 66.6 77 48.1
C07p02310 Brassica napus HOM05D003151 ORTHO05D003723 1.6e-09 66.6 77 48.1
BolC7t40640H Brassica oleracea HOM05D003151 ORTHO05D003723 1.6e-09 66.6 77 48.1
Sp7g27420 Schrenkiella parvula HOM05D003151 ORTHO05D003723 1.6e-09 66.6 48 68.8
Aa31LG2G20920 Aethionema arabicum HOM05D003151 ORTHO05D003723 2.1e-09 66.2 51 58.8
BolC7t46172H Brassica oleracea HOM05D003151 ORTHO05D003723 2.1e-09 66.2 44 70.5
CARHR237490 Cardamine hirsuta HOM05D003151 ORTHO05D003723 2.7e-09 65.9 48 64.6
Thhalv10002058m.g Eutrema salsugineum HOM05D003151 ORTHO05D003723 3.5e-09 65.5 77 46.8
Thhalv10023108m.g Eutrema salsugineum HOM05D003151 ORTHO05D003723 3.5e-09 65.5 77 46.8
AL7G22720 Arabidopsis lyrata HOM05D003151 ORTHO05D003723 4.6e-09 65.1 48 64.6
C07p56970 Brassica napus HOM05D003151 ORTHO05D003723 4.6e-09 65.1 44 70.5
FAN28G1682 Fragaria x ananassa HOM05D003151 ORTHO05D003723 4.6e-09 65.1 47 61.7
Nn1g08912 Nelumbo nucifera HOM05D003151 ORTHO05D003723 4.6e-09 65.1 86 50.0
THA.LOC104801882 Tarenaya hassleriana HOM05D003151 ORTHO05D003723 4.6e-09 65.1 44 65.9
BraA03t14958Z Brassica rapa HOM05D003151 ORTHO05D003723 6.1e-09 64.7 51 62.7
Thhalv10026995m.g Eutrema salsugineum HOM05D003151 ORTHO05D003723 6.1e-09 64.7 48 68.8
CARHR110010 Cardamine hirsuta HOM05D003151 ORTHO05D003723 1.0e-08 63.9 49 61.2
Sp3g32950 Schrenkiella parvula HOM05D003151 ORTHO05D003723 1.0e-08 63.9 48 62.5
arahy.Tifrunner.gnm1.ann1.YN7FFH Arachis hypogaea HOM05D003151 ORTHO05D003723 1.3e-08 63.5 98 41.8
SEGI_35809 Sequoiadendron giganteum HOM05D003151 ORTHO05D003723 1.3e-08 63.5 48 60.4
A03p58990 Brassica napus HOM05D003151 ORTHO05D003723 1.8e-08 63.2 51 60.8
Gohir.D08G266301 Gossypium hirsutum HOM05D003151 ORTHO05D003723 3.9e-08 62.0 36 75.0
AagrBONN_evm.TU.Sc2ySwM_368.3134 Anthoceros agrestis HOM05D003151 ORTHO05D003723 5.1e-08 61.6 48 58.3
Pp3c7_23670 Physcomitrium patens HOM05D003151 ORTHO05D003723 6.7e-08 61.2 83 45.8
HanXRQChr03g0060791 Helianthus annuus HOM05D003151 ORTHO05D003723 1.5e-07 60.1 32 81.2
AT4G29610 Arabidopsis thaliana HOM05D003151 ORTHO05D003723 1.9e-07 59.7 47 68.1
Mapoly0047s0014 Marchantia polymorpha HOM05D003151 ORTHO05D003723 1.9e-07 59.7 48 56.2
AL7G22750 Arabidopsis lyrata HOM05D003151 ORTHO05D003723 3.3e-07 58.9 48 64.6
Pp3c1_4510 Physcomitrium patens HOM05D003151 ORTHO05D003723 4.3e-07 58.5 48 56.2
Pp3c11_5250 Physcomitrium patens HOM05D003151 ORTHO05D003723 5.7e-07 58.2 47 57.4
AT4G29600 Arabidopsis thaliana HOM05D003151 ORTHO05D003723 9.7e-07 57.4 48 60.4
SMO367G0845 Selaginella moellendorffii HOM05D003151 ORTHO05D003723 9.7e-07 57.4 48 56.2
AL682U10010 Arabidopsis lyrata HOM05D003151 ORTHO05D003723 1.3e-06 57.0 78 43.6
Os01g0712700 Oryza sativa ssp. japonica HOM05D003151 ORTHO05D003723 1.3e-06 57.0 53 52.8
arahy.Tifrunner.gnm1.ann1.ME19SE Arachis hypogaea HOM05D003151 ORTHO05D003723 2.2e-06 56.2 49 61.2
CARHR237400 Cardamine hirsuta HOM05D003151 ORTHO05D003723 3.7e-06 55.5 48 58.3
Zm00001eb361370 Zea mays HOM05D003151 ORTHO05D003723 3.7e-06 55.5 53 47.2
Zm00001eb155060 Zea mays HOM05D003151 ORTHO05D003723 4.8e-06 55.1 53 47.2
AL7G22780 Arabidopsis lyrata HOM05D003151 ORTHO05D003723 6.3e-06 54.7 48 56.2
Carub.0007s1094 Capsella rubella HOM05D003151 ORTHO05D003723 6.3e-06 54.7 47 61.7
Carub.0007s1096 Capsella rubella HOM05D003151 ORTHO05D003723 6.3e-06 54.7 48 58.3
CARHR237410 Cardamine hirsuta HOM05D003151 ORTHO05D003723 8.2e-06 54.3 54 55.6


User provided reference genes

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