Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 2.8e-58 228.4 115 100.0
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 2.9e-47 191.8 106 93.4
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 1.4e-46 189.5 115 83.5
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 5.4e-46 187.6 106 90.6
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 5.4e-46 187.6 106 90.6
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-45 185.7 115 82.6
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-45 185.7 115 82.6
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-45 185.7 115 82.6
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-45 185.7 115 82.6
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-45 185.7 115 82.6
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-45 185.7 115 82.6
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-45 185.7 115 82.6
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 4.6e-45 184.5 106 89.6
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 1.0e-44 183.3 106 87.7
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 1.3e-44 183.0 106 88.7
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.7e-44 182.6 106 87.7
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 3.0e-44 181.8 106 84.9
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 3.9e-44 181.4 106 87.7
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 6.6e-44 180.6 106 86.8
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 1.9e-43 179.1 106 85.8
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 7.3e-43 177.2 115 77.4
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 9.6e-43 176.8 106 84.9
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 9.6e-43 176.8 106 84.9
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 9.6e-43 176.8 106 84.9
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 9.6e-43 176.8 106 84.9
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 9.6e-43 176.8 106 84.9
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 9.6e-43 176.8 106 84.9
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 9.6e-43 176.8 106 84.9
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 9.6e-43 176.8 106 84.9
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 9.6e-43 176.8 106 84.9
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 9.6e-43 176.8 106 84.9
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 1.3e-42 176.4 106 84.0
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 1.3e-42 176.4 106 84.0
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 2.8e-42 175.3 106 84.0
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.8e-42 174.5 106 83.0
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 8.1e-42 173.7 108 84.3
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 2.4e-41 172.2 107 84.1
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.4e-41 172.2 106 82.1
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.1e-41 171.8 115 78.3
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 3.1e-41 171.8 115 78.3
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 3.1e-41 171.8 115 78.3
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 3.1e-41 171.8 115 78.3
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 4.0e-41 171.4 106 82.1
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 4.0e-41 171.4 106 84.0
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 5.3e-41 171.0 106 84.0
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 6.9e-41 170.6 106 81.1
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 1.2e-40 169.9 106 84.9
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.2e-40 169.9 103 83.5
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.2e-40 169.9 103 83.5
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 2.0e-40 169.1 106 84.0
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 2.6e-40 168.7 106 83.0
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 4.5e-40 167.9 106 81.1
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.9e-39 164.5 102 81.4
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 6.4e-39 164.1 103 82.5
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 1.1e-38 163.3 106 80.2
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 1.1e-38 163.3 106 80.2
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 1.1e-38 163.3 106 80.2
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.4e-38 162.2 96 85.4
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.4e-38 162.2 96 85.4
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 3.2e-38 161.8 106 77.4
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 3.2e-38 161.8 106 76.4
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 4.2e-38 161.4 96 85.4
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.3e-38 160.2 115 73.9
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.3e-36 155.6 101 77.2
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 3.9e-36 154.8 115 72.2
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 8.7e-36 153.7 112 71.4
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 4.3e-35 151.4 103 79.6
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 1.3e-34 149.8 106 74.5
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.6e-34 149.4 106 73.6
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.6e-34 149.4 106 73.6
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.8e-34 148.7 101 73.3
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-31 139.4 96 72.9
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 4.9e-31 137.9 115 68.7
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 8.4e-31 137.1 95 73.7
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 1.9e-30 136.0 108 64.8
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 7.1e-30 134.0 104 67.3
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 2.7e-29 132.1 94 74.5
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.3e-28 129.8 76 84.2
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 1.3e-28 129.8 81 82.7
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.1e-27 126.7 117 65.0
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.5e-27 126.3 76 81.6
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 1.1e-25 120.2 78 79.5
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 1.8e-25 119.4 107 59.8
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 1.8e-25 119.4 107 59.8
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 1.8e-25 119.4 107 59.8
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 1.8e-25 119.4 107 59.8
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 1.8e-25 119.4 107 59.8
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 1.8e-25 119.4 107 59.8
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 1.8e-25 119.4 107 59.8
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 1.8e-25 119.4 107 59.8
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 5.9e-24 114.4 92 66.3
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.7e-23 112.8 108 62.0
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 3.2e-22 108.6 62 87.1
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 5.5e-22 107.8 106 59.4
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 5.5e-22 107.8 88 63.6
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 5.5e-22 107.8 100 60.0
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 1.2e-21 106.7 66 75.8
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 1.6e-21 106.3 100 60.0
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 1.6e-21 106.3 100 59.0
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.8e-20 102.8 75 70.7
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 3.0e-20 102.1 57 89.5
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 3.0e-20 102.1 57 89.5
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 5.1e-20 101.3 76 69.7
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 1.5e-19 99.8 68 73.5
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 1.5e-19 99.8 95 55.8
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 5.7e-19 97.8 108 51.9
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 7.4e-19 97.4 61 77.0
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.2e-18 95.9 57 84.2
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 2.8e-18 95.5 57 84.2
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 1.1e-17 93.6 57 82.5
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 1.1e-17 93.6 57 82.5
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 1.1e-17 93.6 57 82.5
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.1e-17 93.6 57 80.7
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 4.5e-16 88.2 57 77.2
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 7.7e-16 87.4 52 84.6
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.2e-15 85.9 52 82.7
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 3.8e-15 85.1 58 74.1
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 2.5e-14 82.4 68 58.8
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 4.2e-14 81.6 83 51.8
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 7.2e-14 80.9 115 48.7
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.1e-13 79.3 52 76.9
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 6.1e-13 77.8 96 44.8
Solyc11g039530.2 Solanum lycopersicum HOM05D002578 ORTHO05D005154 8.8e-12 73.9 51 74.5
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 1.1e-11 73.6 43 86.0
HanXRQChr16g0503681 Helianthus annuus HOM05D002578 ORTHO05D005154 2.0e-11 72.8 49 73.5
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 5.7e-11 71.2 37 94.6
Potri.012G047500 Populus trichocarpa HOM05D002578 ORTHO05D005154 5.7e-11 71.2 48 70.8
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 9.7e-11 70.5 43 81.4
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 1.7e-10 69.7 38 89.5
Lsat_1_v5_gn_5_168100 Lactuca sativa HOM05D002578 ORTHO05D005154 3.1e-09 65.5 44 75.0
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 4.1e-09 65.1 55 61.8
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 4.1e-09 65.1 55 61.8
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 4.1e-09 65.1 55 61.8
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 4.1e-09 65.1 55 61.8
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 4.1e-09 65.1 55 61.8
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 4.1e-09 65.1 55 61.8
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 4.1e-09 65.1 55 61.8
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 4.1e-09 65.1 55 61.8
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 4.1e-09 65.1 55 61.8
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.1e-09 65.1 55 61.8
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 4.1e-09 65.1 55 61.8
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 1.2e-08 63.5 55 61.8
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 1.5e-08 63.2 49 63.3
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 7.7e-08 60.8 54 61.1
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.0e-07 60.5 46 65.2
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 1.3e-07 60.1 55 56.4
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 1.3e-07 60.1 49 63.3
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 5.5e-06 54.7 33 81.8


User provided reference genes

Program Settings