Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 7.4e-24 112.8 50 100.0
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 2.6e-21 104.4 47 95.7
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 3.4e-21 104.0 46 97.8
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 3.4e-21 104.0 46 97.8
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 1.3e-20 102.1 46 95.7
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 1.7e-20 101.7 45 97.8
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.7e-20 101.7 48 93.8
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.7e-20 101.7 48 93.8
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.7e-20 101.7 44 100.0
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 1.7e-20 101.7 44 100.0
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 1.7e-20 101.7 44 100.0
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 1.7e-20 101.7 44 100.0
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 1.7e-20 101.7 44 100.0
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 1.7e-20 101.7 44 100.0
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 1.7e-20 101.7 44 100.0
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 1.7e-20 101.7 44 100.0
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 1.7e-20 101.7 44 100.0
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 1.7e-20 101.7 44 100.0
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 2.2e-20 101.3 44 97.7
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 3.8e-20 100.5 45 95.6
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 3.8e-20 100.5 48 91.7
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 3.8e-20 100.5 44 97.7
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 3.8e-20 100.5 45 95.6
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 3.8e-20 100.5 45 95.6
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 3.8e-20 100.5 45 95.6
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 3.8e-20 100.5 44 97.7
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 6.5e-20 99.8 44 97.7
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.5e-20 99.8 44 97.7
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.5e-20 99.8 44 97.7
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.5e-20 99.8 44 97.7
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 6.5e-20 99.8 44 97.7
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 6.5e-20 99.8 44 97.7
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 6.5e-20 99.8 44 97.7
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 6.5e-20 99.8 44 97.7
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 1.1e-19 99.0 44 95.5
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 1.4e-19 98.6 45 93.3
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 1.4e-19 98.6 44 97.7
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.4e-19 98.6 44 97.7
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 1.4e-19 98.6 44 97.7
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 1.4e-19 98.6 44 97.7
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.5e-19 97.8 47 89.4
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 3.2e-19 97.4 44 95.5
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 3.2e-19 97.4 44 95.5
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 4.2e-19 97.1 48 89.6
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 4.2e-19 97.1 44 93.2
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 5.5e-19 96.7 49 87.8
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 5.5e-19 96.7 44 95.5
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 5.5e-19 96.7 44 95.5
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 5.5e-19 96.7 44 93.2
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 7.2e-19 96.3 44 95.5
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 9.4e-19 95.9 45 91.1
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 95.5
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 1.2e-18 95.5 44 93.2
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.6e-18 95.1 46 84.8
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 1.6e-18 95.1 42 97.6
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 1.6e-18 95.1 44 93.2
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 1.6e-18 95.1 44 93.2
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.6e-18 95.1 44 90.9
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.6e-18 95.1 44 93.2
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.6e-18 95.1 44 93.2
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.6e-18 95.1 44 93.2
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 1.6e-18 95.1 44 93.2
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 1.6e-18 95.1 44 93.2
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 1.6e-18 95.1 44 93.2
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 1.6e-18 95.1 44 93.2
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 1.6e-18 95.1 44 93.2
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 1.6e-18 95.1 44 93.2
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 2.7e-18 94.4 44 95.5
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 2.7e-18 94.4 44 93.2
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 3.6e-18 94.0 44 93.2
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 3.6e-18 94.0 46 93.5
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 3.6e-18 94.0 45 93.3
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 3.6e-18 94.0 44 90.9
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 3.6e-18 94.0 46 93.5
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 6.1e-18 93.2 44 90.9
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 6.1e-18 93.2 44 88.6
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 6.1e-18 93.2 44 93.2
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 7.9e-18 92.8 44 88.6
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 7.9e-18 92.8 47 83.0
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 7.9e-18 92.8 47 83.0
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 7.9e-18 92.8 47 83.0
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 7.9e-18 92.8 47 83.0
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 7.9e-18 92.8 44 86.4
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 7.9e-18 92.8 44 90.9
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 7.9e-18 92.8 44 90.9
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 7.9e-18 92.8 45 93.3
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 7.9e-18 92.8 45 93.3
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.0e-17 92.4 44 88.6
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 1.0e-17 92.4 44 88.6
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.0e-17 92.4 40 97.5
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 1.4e-17 92.0 45 93.3
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.4e-17 92.0 45 93.3
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.4e-17 92.0 44 88.6
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 1.4e-17 92.0 45 93.3
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 1.8e-17 91.7 41 92.7
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.8e-17 91.7 44 88.6
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.8e-17 91.7 44 88.6
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 1.8e-17 91.7 44 90.9
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 2.3e-17 91.3 42 90.5
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 2.3e-17 91.3 44 90.9
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 2.3e-17 91.3 44 90.9
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 3.0e-17 90.9 48 83.3
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 3.0e-17 90.9 44 90.9
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 5.1e-17 90.1 44 88.6
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 6.7e-17 89.7 42 88.1
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 6.7e-17 89.7 44 90.9
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 8.8e-17 89.4 39 97.4
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.5e-16 88.6 44 86.4
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 2.5e-16 87.8 42 88.1
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 2.5e-16 87.8 40 90.0
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 7.4e-16 86.3 46 87.0
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 7.4e-16 86.3 46 87.0
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 7.4e-16 86.3 46 87.0
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 2.2e-15 84.7 47 78.7
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 2.8e-15 84.3 42 85.7
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 3.7e-15 84.0 44 84.1
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 3.7e-15 84.0 42 83.3
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 6.3e-15 83.2 46 84.8
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 1.4e-14 82.0 40 90.0
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 4.1e-14 80.5 40 82.5
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 9.1e-14 79.3 45 68.9
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 9.1e-14 79.3 44 70.5
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 9.1e-14 79.3 44 70.5
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 1.5e-13 78.6 42 83.3
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 1.5e-13 78.6 42 83.3
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 1.5e-13 78.6 66 60.6
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 3.4e-13 77.4 36 91.7
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 3.4e-13 77.4 44 72.7
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 2.5e-11 71.2 37 78.4
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 2.5e-11 71.2 37 83.8
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 3.2e-11 70.9 45 71.1
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 3.2e-11 70.9 35 82.9
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 5.5e-11 70.1 46 67.4
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 9.4e-11 69.3 40 75.0
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 1.6e-10 68.6 41 73.2
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 4.7e-10 67.0 32 84.4
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 1.0e-09 65.9 42 66.7
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 3.0e-09 64.3 76 46.1
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 8.8e-09 62.8 31 80.6
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 8.8e-09 62.8 31 87.1
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 8.8e-09 62.8 31 87.1
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 3.3e-08 60.8 50 54.0
arahy.Tifrunner.gnm1.ann1.VGS9ID Arachis hypogaea HOM05D004494 ORTHO05D005493 9.7e-08 59.3 37 64.9
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 3.7e-07 57.4 50 50.0
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 6.3e-07 56.6 75 45.3
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 1.1e-06 55.8 49 49.0
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.1e-06 55.8 49 49.0
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 1.8e-06 55.1 49 49.0
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 3.1e-06 54.3 41 53.7
arahy.Tifrunner.gnm1.ann1.H77AQF Arachis hypogaea HOM05D004494 ORTHO05D005493 4.1e-06 53.9 24 95.8


User provided reference genes

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