Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24881 Nelumbo nucifera HOM05D003509 ORTHO05D004205 7.3e-102 374.0 204 100.0
Nn4g24883 Nelumbo nucifera HOM05D003509 ORTHO05D004205 3.0e-95 352.1 191 100.0
TAR628G0828 Trochodendron aralioides HOM05D003509 ORTHO05D004205 3.5e-72 275.4 191 78.0
Dinv16288 Davidia involucrata HOM05D003509 ORTHO05D004205 6.9e-68 261.2 194 74.7
Aqoxy1G03668 Aquilegia oxysepala HOM05D003509 ORTHO05D004205 6.4e-66 254.6 191 74.9
Actinidia36591 Actinidia chinensis HOM05D003509 ORTHO05D004205 2.3e-63 246.1 195 71.3
CSS0014940 Camellia sinensis var. sinensis HOM05D003509 ORTHO05D004205 4.3e-62 241.9 195 71.3
Prupe.2G084100 Prunus persica HOM05D003509 ORTHO05D004205 7.4e-62 241.1 191 72.3
COL.COLO4_09956 Corchorus olitorius HOM05D003509 ORTHO05D004205 2.1e-61 239.6 191 71.7
Actinidia25645 Actinidia chinensis HOM05D003509 ORTHO05D004205 2.8e-61 239.2 195 69.7
QL06p049655 Quercus lobata HOM05D003509 ORTHO05D004205 4.8e-61 238.4 191 71.2
PSO017G5498 Papaver somniferum HOM05D003509 ORTHO05D004205 6.2e-61 238.0 191 68.6
Atru.chr4.74 Acer truncatum HOM05D003509 ORTHO05D004205 2.6e-59 232.6 191 70.2
Cfa002672 Carpinus fangiana HOM05D003509 ORTHO05D004205 4.5e-59 231.9 191 70.7
Gohir.D12G085800 Gossypium hirsutum HOM05D003509 ORTHO05D004205 4.5e-59 231.9 191 69.6
CiPaw.04G098900 Carya illinoinensis HOM05D003509 ORTHO05D004205 1.3e-58 230.3 191 67.0
Gohir.A12G087500 Gossypium hirsutum HOM05D003509 ORTHO05D004205 1.3e-58 230.3 191 69.1
Gorai.008G096100 Gossypium raimondii HOM05D003509 ORTHO05D004205 1.7e-58 229.9 191 69.1
MD02G1255200 Malus domestica HOM05D003509 ORTHO05D004205 1.7e-58 229.9 191 69.6
Rhsim10G0162600 Rhododendron simsii HOM05D003509 ORTHO05D004205 1.7e-58 229.9 195 70.3
CAN.G441.2 Capsicum annuum HOM05D003509 ORTHO05D004205 2.2e-58 229.6 195 70.3
FAN23G1356 Fragaria x ananassa HOM05D003509 ORTHO05D004205 2.2e-58 229.6 191 69.1
PSO170G3704 Papaver somniferum HOM05D003509 ORTHO05D004205 2.2e-58 229.6 191 68.1
PGR102G2959 Punica granatum HOM05D003509 ORTHO05D004205 2.9e-58 229.2 191 69.1
RcHm_v2.0_Chr3g0484971 Rosa chinensis HOM05D003509 ORTHO05D004205 2.9e-58 229.2 191 69.1
FAN28G0272 Fragaria x ananassa HOM05D003509 ORTHO05D004205 3.8e-58 228.8 195 67.7
FvH4_1g25840 Fragaria vesca HOM05D003509 ORTHO05D004205 4.9e-58 228.4 191 69.1
FAN19G1703 Fragaria x ananassa HOM05D003509 ORTHO05D004205 4.9e-58 228.4 191 69.1
Lalb_Chr23g0277341 Lupinus albus HOM05D003509 ORTHO05D004205 6.4e-58 228.0 195 67.7
Nitab4.5_0000104g0130 Nicotiana tabacum HOM05D003509 ORTHO05D004205 6.4e-58 228.0 195 68.2
Sc13g0001620 Simmondsia chinensis HOM05D003509 ORTHO05D004205 6.4e-58 228.0 191 66.5
Lalb_Chr11g0075361 Lupinus albus HOM05D003509 ORTHO05D004205 1.4e-57 226.9 194 68.6
AUR62024498 Chenopodium quinoa HOM05D003509 ORTHO05D004205 1.9e-57 226.5 210 64.8
Nitab4.5_0006517g0010 Nicotiana tabacum HOM05D003509 ORTHO05D004205 1.9e-57 226.5 195 68.2
Sopen04g024980 Solanum pennellii HOM05D003509 ORTHO05D004205 1.9e-57 226.5 195 69.2
MD07G1066800 Malus domestica HOM05D003509 ORTHO05D004205 5.5e-57 224.9 191 68.1
Ciclev10024720m.g Citrus clementina HOM05D003509 ORTHO05D004205 7.1e-57 224.6 191 66.5
Cc07_g15310 Coffea canephora HOM05D003509 ORTHO05D004205 7.1e-57 224.6 194 66.0
Solyc04g055120.3 Solanum lycopersicum HOM05D003509 ORTHO05D004205 7.1e-57 224.6 198 68.7
TWI74G1477 Tripterygium wilfordii HOM05D003509 ORTHO05D004205 1.2e-56 223.8 191 67.0
CANSAT54G2466 Cannabis sativa HOM05D003509 ORTHO05D004205 1.6e-56 223.4 191 68.6
Eucgr.H04794 Eucalyptus grandis HOM05D003509 ORTHO05D004205 2.1e-56 223.0 191 67.0
CiPaw.03G141400 Carya illinoinensis HOM05D003509 ORTHO05D004205 2.7e-56 222.6 193 68.4
Thecc.01G102500 Theobroma cacao HOM05D003509 ORTHO05D004205 2.7e-56 222.6 191 68.1
Ah.02g124690 Amaranthus hybridus HOM05D003509 ORTHO05D004205 3.5e-56 222.2 194 66.5
Sabra07G0075800 Salix brachista HOM05D003509 ORTHO05D004205 6.0e-56 221.5 197 65.0
AL7G12080 Arabidopsis lyrata HOM05D003509 ORTHO05D004205 1.3e-55 220.3 196 66.8
Ca_16534_v3 Cicer arietinum L. HOM05D003509 ORTHO05D004205 1.8e-55 219.9 191 66.5
ECA233G1869 Erigeron canadensis HOM05D003509 ORTHO05D004205 2.3e-55 219.5 195 67.2
AT4G39850 Arabidopsis thaliana HOM05D003509 ORTHO05D004205 3.0e-55 219.2 196 66.3
Lj6g0023245 Lotus japonicus HOM05D003509 ORTHO05D004205 3.0e-55 219.2 194 66.5
CDE04G0016 Ceratophyllum demersum HOM05D003509 ORTHO05D004205 3.9e-55 218.8 191 66.0
Gohir.D03G037100 Gossypium hirsutum HOM05D003509 ORTHO05D004205 3.9e-55 218.8 191 64.9
Gohir.D11G222000 Gossypium hirsutum HOM05D003509 ORTHO05D004205 5.1e-55 218.4 191 66.5
Gohir.A11G201000 Gossypium hirsutum HOM05D003509 ORTHO05D004205 8.7e-55 217.6 191 66.5
Gorai.007G239200 Gossypium raimondii HOM05D003509 ORTHO05D004205 8.7e-55 217.6 191 66.0
Psat5g089680 Pisum sativum HOM05D003509 ORTHO05D004205 8.7e-55 217.6 194 64.9
Gorai.003G038900 Gossypium raimondii HOM05D003509 ORTHO05D004205 1.1e-54 217.2 191 64.9
Potri.005G076200 Populus trichocarpa HOM05D003509 ORTHO05D004205 1.1e-54 217.2 191 64.4
TPR.G17853 Trifolium pratense HOM05D003509 ORTHO05D004205 1.1e-54 217.2 194 64.4
Glyma.08G136400 Glycine max HOM05D003509 ORTHO05D004205 1.5e-54 216.9 194 67.0
Glyma.05G178900 Glycine max HOM05D003509 ORTHO05D004205 2.5e-54 216.1 194 67.0
HanXRQChr03g0087081 Helianthus annuus HOM05D003509 ORTHO05D004205 2.5e-54 216.1 195 64.1
Hund19140 Selenicereus undatus HOM05D003509 ORTHO05D004205 2.5e-54 216.1 191 65.4
arahy.Tifrunner.gnm1.ann1.R7GNZQ Arachis hypogaea HOM05D003509 ORTHO05D004205 3.3e-54 215.7 194 66.5
MSTRG.3782 Avicennia marina HOM05D003509 ORTHO05D004205 3.3e-54 215.7 194 63.4
Thhalv10024225m.g Eutrema salsugineum HOM05D003509 ORTHO05D004205 3.3e-54 215.7 196 65.8
arahy.Tifrunner.gnm1.ann1.Y9QREV Arachis hypogaea HOM05D003509 ORTHO05D004205 4.3e-54 215.3 194 66.0
DCAR_003505 Daucus carota HOM05D003509 ORTHO05D004205 1.3e-53 213.8 195 63.6
Phvul.002G255500 Phaseolus vulgaris HOM05D003509 ORTHO05D004205 1.3e-53 213.8 194 64.9
Potri.007G092200 Populus trichocarpa HOM05D003509 ORTHO05D004205 1.3e-53 213.8 191 64.4
CARHR246850 Cardamine hirsuta HOM05D003509 ORTHO05D004205 1.6e-53 213.4 198 65.7
Lsat_1_v5_gn_8_1020 Lactuca sativa HOM05D003509 ORTHO05D004205 1.6e-53 213.4 195 64.6
Medtr3g087350 Medicago truncatula HOM05D003509 ORTHO05D004205 1.6e-53 213.4 194 63.4
THA.LOC104807697 Tarenaya hassleriana HOM05D003509 ORTHO05D004205 2.1e-53 213.0 192 65.1
Phvul.001G251800 Phaseolus vulgaris HOM05D003509 ORTHO05D004205 2.8e-53 212.6 194 64.9
Sp7g36040 Schrenkiella parvula HOM05D003509 ORTHO05D004205 2.8e-53 212.6 198 64.6
VMungo0251G2994 Vigna mungo HOM05D003509 ORTHO05D004205 2.8e-53 212.6 194 66.0
ATR0763G048 Amborella trichopoda HOM05D003509 ORTHO05D004205 4.8e-53 211.8 191 62.3
arahy.Tifrunner.gnm1.ann1.X4FXIQ Arachis hypogaea HOM05D003509 ORTHO05D004205 6.2e-53 211.5 195 65.1
vmacro12953 Vaccinium macrocarpon HOM05D003509 ORTHO05D004205 6.2e-53 211.5 233 57.5
Glyma.11G239800 Glycine max HOM05D003509 ORTHO05D004205 1.1e-52 210.7 194 67.0
Glyma.18G017600 Glycine max HOM05D003509 ORTHO05D004205 1.1e-52 210.7 194 67.0
CsaV3_4G008940 Cucumis sativus L. HOM05D003509 ORTHO05D004205 4.0e-52 208.8 191 63.9
Manes.12G135600 Manihot esculenta HOM05D003509 ORTHO05D004205 4.0e-52 208.8 191 63.4
Aa31LG6G15420 Aethionema arabicum HOM05D003509 ORTHO05D004205 6.9e-52 208.0 197 63.5
Sabra05G0062800 Salix brachista HOM05D003509 ORTHO05D004205 1.2e-51 207.2 199 61.3
MELO3C018990.2 Cucumis melo HOM05D003509 ORTHO05D004205 4.5e-51 205.3 191 63.4
Sed0020843 Sechium edule HOM05D003509 ORTHO05D004205 1.3e-50 203.8 191 61.8
Manes.06G027900 Manihot esculenta HOM05D003509 ORTHO05D004205 2.9e-50 202.6 193 62.7
BcaNung02306 Brassica carinata HOM05D003509 ORTHO05D004205 1.8e-47 193.4 197 62.4
Dinv21913 Davidia involucrata HOM05D003509 ORTHO05D004205 2.3e-47 193.0 155 71.6
SGA_v2.0_scaffold47G17784 Striga asiatica HOM05D003509 ORTHO05D004205 5.1e-47 191.8 192 57.3
Peaxi162Scf00212g01215 Petunia axillaris HOM05D003509 ORTHO05D004205 1.1e-46 190.7 175 65.7
EL10As8g23855 Beta vulgaris HOM05D003509 ORTHO05D004205 3.3e-46 189.1 170 64.7
Gohir.A02G143400 Gossypium hirsutum HOM05D003509 ORTHO05D004205 4.3e-46 188.7 171 63.7
ClCG10G008740 Citrullus lanatus HOM05D003509 ORTHO05D004205 9.6e-46 187.6 171 64.3
Lalb_Chr08g0231111 Lupinus albus HOM05D003509 ORTHO05D004205 9.6e-46 187.6 192 58.9
SalBow5G0975 Salvia bowleyana HOM05D003509 ORTHO05D004205 1.6e-45 186.8 194 55.7
SalBow5G3202 Salvia bowleyana HOM05D003509 ORTHO05D004205 2.8e-45 186.0 194 55.2
VMungo1383G3521 Vigna mungo HOM05D003509 ORTHO05D004205 2.4e-44 183.0 174 60.9
C03p78380 Brassica napus HOM05D003509 ORTHO05D004205 6.9e-44 181.4 202 55.9
BolC3t20097H Brassica oleracea HOM05D003509 ORTHO05D004205 9.0e-44 181.0 202 55.4
Lj4A888G17 Lonicera japonica HOM05D003509 ORTHO05D004205 1.2e-43 180.6 132 78.0
Zm00001eb140100 Zea mays HOM05D003509 ORTHO05D004205 1.5e-43 180.3 194 53.6
SEGI_14643 Sequoiadendron giganteum HOM05D003509 ORTHO05D004205 1.3e-42 177.2 191 53.9
A08p23300 Brassica napus HOM05D003509 ORTHO05D004205 1.9e-41 173.3 194 55.7
BraA08t34285Z Brassica rapa HOM05D003509 ORTHO05D004205 1.9e-41 173.3 194 55.7
Carub.0007s0178 Capsella rubella HOM05D003509 ORTHO05D004205 9.3e-41 171.0 196 56.6
Zm00001eb356090 Zea mays HOM05D003509 ORTHO05D004205 3.6e-40 169.1 196 51.5
BcaNung03401 Brassica carinata HOM05D003509 ORTHO05D004205 3.9e-39 165.6 194 55.7
C07p62850 Brassica napus HOM05D003509 ORTHO05D004205 3.9e-39 165.6 194 55.7
BolC7t46697H Brassica oleracea HOM05D003509 ORTHO05D004205 5.1e-39 165.2 194 55.2
Mapoly0144s0028 Marchantia polymorpha HOM05D003509 ORTHO05D004205 4.5e-35 152.1 158 55.1
Pp3c14_6330 Physcomitrium patens HOM05D003509 ORTHO05D004205 1.8e-31 140.2 177 49.2
AagrBONN_evm.TU.Sc2ySwM_344.2362 Anthoceros agrestis HOM05D003509 ORTHO05D004205 3.9e-31 139.0 191 45.5
arahy.Tifrunner.gnm1.ann1.41RR18 Arachis hypogaea HOM05D003509 ORTHO05D004205 1.1e-30 137.5 142 61.3
Migut.L00116 Erythranthe guttata HOM05D003509 ORTHO05D004205 1.5e-30 137.1 197 47.7
SMO351G0412 Selaginella moellendorffii HOM05D003509 ORTHO05D004205 4.8e-29 132.1 194 46.4
Duzib147G0762 Durio zibethinus HOM05D003509 ORTHO05D004205 7.2e-25 118.2 116 62.1
Duzib264G1109 Durio zibethinus HOM05D003509 ORTHO05D004205 1.6e-24 117.1 116 60.3
AUR62026083 Chenopodium quinoa HOM05D003509 ORTHO05D004205 5.7e-22 108.6 116 56.0
Ah.03g141700 Amaranthus hybridus HOM05D003509 ORTHO05D004205 1.2e-19 100.9 116 52.6
Pp3c17_11810 Physcomitrium patens HOM05D003509 ORTHO05D004205 1.6e-19 100.5 74 70.3
Oeu002402.1 Olea europaea HOM05D003509 ORTHO05D004205 2.0e-19 100.1 116 57.8
HPP92_016105 Vanilla planifolia HOM05D003509 ORTHO05D004205 1.2e-14 84.3 113 49.6
Haze_24942 Corylus avellana HOM05D003509 ORTHO05D004205 2.4e-12 76.6 98 50.0
unitig_899.g15007 Utricularia gibba HOM05D003509 ORTHO05D004205 4.1e-12 75.9 116 44.8
Sabra03G0044500 Salix brachista HOM05D002374 ORTHO05D014488 2.9e-10 69.7 101 43.6
COL.COLO4_31263 Corchorus olitorius HOM05D003509 ORTHO05D004205 3.8e-10 69.3 57 64.9
COL.COLO4_12402 Corchorus olitorius HOM05D003509 ORTHO05D004205 8.5e-10 68.2 84 48.8


User provided reference genes

Program Settings