Gene: AT4G39850

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G39850
  • Transcript Identifier AT4G39850.3
  • Gene Type Coding gene
  • Location Chr4 : 18489220-18496762 : positive

Gene Family Information

  • ID HOM05D003509
  • #Genes/#Species 194/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G39850.3
  • symbol ABCD1
  • Alias ACN2,acetate non-utilizing 2,AtABCD1,Arabidopsis thaliana ATP-binding cassette D1,CTS,COMATOSE,PED3,PEROXISOME DEFECTIVE 3,PXA1,peroxisomal ABC transporter 1
  • full_name ATP-binding cassette D1
  • uniprot Q94FB9

Descriptions

  • Description peroxisomal ABC transporter 1
  • Computational description peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Computational description peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042760
IBA
Gene Ontologyvery long-chain fatty acid catabolic process1
GO:0015916
IEA
GOA Databasefatty-acyl-CoA transport
GO:0015916
IMP
Gene Ontologyfatty-acyl-CoA transport2
GO:0055085
IEA
Gene Ontologytransmembrane transport
GO:0055085
IEA
InterProtransmembrane transport
GO:0006635
IMP
IBA
Gene Ontologyfatty acid beta-oxidation1 3
GO:0015910
IBA
Gene Ontologylong-chain fatty acid import into peroxisome1
GO:0007031
IBA
Gene Ontologyperoxisome organization1
GO:0006744
IMP
Gene Ontologyubiquinone biosynthetic process4
GO:0010030
IMP
Gene Ontologypositive regulation of seed germination5
GO:0016042
IMP
Gene Ontologylipid catabolic process2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0042626
ISS, IBA
Gene OntologyATPase-coupled transmembrane transporter activity1 3
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IBA
Gene OntologyATP binding1
GO:0005524
IEA
InterProATP binding
GO:0140359
IEA
Gene OntologyABC-type transporter activity
GO:0140359
IEA
InterProABC-type transporter activity
GO:0015607
IEA
Gene OntologyABC-type fatty-acyl-CoA transporter activity
GO:0005324
IBA
Gene Ontologylong-chain fatty acid transporter activity1
GO:0005515
IPI
Gene Ontologyprotein binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005778
IEA
GOA Databaseperoxisomal membrane
GO:0005778
IBA
Gene Ontologyperoxisomal membrane1
GO:0046861
IEA
GOA Databaseglyoxysomal membrane
GO:0046861
IDA
Gene Ontologyglyoxysomal membrane7
GO:0005777
IEA
GOA Databaseperoxisome
GO:0005777
IDA
Gene Ontologyperoxisome2
GO:0009514
IEA
GOA Databaseglyoxysome
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016021
IEA
InterProintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003439 ABC transporter-like, ATP-binding domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011527 ABC transporter type 1, transmembrane domain
IPR003593 AAA+ ATPase domain
IPR036640 ABC transporter type 1, transmembrane domain superfamily
Mapman id Description
24.1.3.1.3 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter
5.8.4 Lipid metabolism.lipid trafficking.peroxisomal fatty acid transporter (PXA1)