Gene: Sopen04g024980

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g024980
  • Transcript Identifier Sopen04g024980.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 65451328-65471801 : positive

Gene Family Information

  • ID HOM05D003509
  • #Genes/#Species 194/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g024980.1

Descriptions

  • Description Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome. | peroxisomal ABC transporter 1 (PXA1) | CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core , ABC transporter-like , ABC transporter, N-terminal , ABC transporter, transmembrane domain, type 1 , ABC transporter integral membrane type 1 , ABC transporter, conserved site | BEST Arabidopsis thaliana protein match is: ABC transporter family protein ., ABC transporter, N-terminal
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0055085
IEA
InterProtransmembrane transport
GO:0010030
ISO
PLAZA Integrative Orthologypositive regulation of seed germination AT4G39850
GO:0006635
ISO
PLAZA Integrative Orthologyfatty acid beta-oxidation AT4G39850
GO:0015916
ISO
PLAZA Integrative Orthologyfatty-acyl-CoA transport AT4G39850
GO:0016042
ISO
PLAZA Integrative Orthologylipid catabolic process AT4G39850
GO:0006744
ISO
PLAZA Integrative Orthologyubiquinone biosynthetic process AT4G39850

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0140359
IEA
InterProABC-type transporter activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G39850

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016021
IEA
InterProintegral component of membrane
GO:0005777
ISO
PLAZA Integrative Orthologyperoxisome AT4G39850
GO:0046861
ISO
PLAZA Integrative Orthologyglyoxysomal membrane AT4G39850

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR003439 ABC transporter-like, ATP-binding domain
IPR036640 ABC transporter type 1, transmembrane domain superfamily
IPR011527 ABC transporter type 1, transmembrane domain
IPR003593 AAA+ ATPase domain
Mapman id Description
24.1.3.1.3 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter
5.8.4 Lipid metabolism.lipid trafficking.peroxisomal fatty acid transporter (PXA1)