Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24497 Nelumbo nucifera HOM05D000066 ORTHO05D274065 1.3e-57 226.1 109 100.0
CSS0034481 Camellia sinensis var. sinensis HOM05D000066 ORTHO05D001011 1.5e-16 89.7 57 73.7
Dinv14373 Davidia involucrata HOM05D000066 ORTHO05D001011 5.6e-16 87.8 61 70.5
TAR622G1144 Trochodendron aralioides HOM05D000066 ORTHO05D001011 5.6e-16 87.8 57 70.2
TAR371G0947 Trochodendron aralioides HOM05D000066 ORTHO05D001011 1.2e-15 86.7 61 72.1
TAR371G1120 Trochodendron aralioides HOM05D000066 ORTHO05D001011 1.2e-15 86.7 61 72.1
Rhsim09G0086400 Rhododendron simsii HOM05D000066 ORTHO05D001011 4.7e-15 84.7 57 68.4
Lj3C860G16 Lonicera japonica HOM05D000066 ORTHO05D001011 6.1e-15 84.3 62 67.7
Dinv05684 Davidia involucrata HOM05D000066 ORTHO05D001011 1.0e-14 83.6 61 65.6
Actinidia12432 Actinidia chinensis HOM05D000066 ORTHO05D001011 1.4e-14 83.2 57 66.7
Hma1.2p1_0037F.1_g023790 Hydrangea macrophylla HOM05D000066 ORTHO05D001011 1.8e-14 82.8 63 68.3
TAR629G1997 Trochodendron aralioides HOM05D000066 ORTHO05D001011 1.8e-14 82.8 60 66.7
Actinidia20111 Actinidia chinensis HOM05D000066 ORTHO05D001011 4.0e-14 81.6 54 68.5
Cc11_g05890 Coffea canephora HOM05D000066 ORTHO05D001011 1.5e-13 79.7 60 60.0
Cc00_g17060 Coffea canephora HOM05D000066 ORTHO05D001011 2.0e-13 79.3 60 60.0
Prupe.1G337000 Prunus persica HOM05D000066 ORTHO05D001011 4.4e-13 78.2 44 77.3
Haze_10828 Corylus avellana HOM05D000066 ORTHO05D001011 9.8e-13 77.0 63 60.3
HanXRQChr16g0527351 Helianthus annuus HOM05D000066 ORTHO05D001011 2.2e-12 75.9 60 60.0
Oeu044075.1 Olea europaea HOM05D000066 ORTHO05D001011 2.2e-12 75.9 60 63.3
CiPaw.06G059300 Carya illinoinensis HOM05D000066 ORTHO05D001011 2.9e-12 75.5 58 62.1
DCAR_026819 Daucus carota HOM05D000066 ORTHO05D001011 2.9e-12 75.5 61 63.9
FvH4_4g33070 Fragaria vesca HOM05D000066 ORTHO05D001011 3.7e-12 75.1 57 64.9
FAN12G3372 Fragaria x ananassa HOM05D000066 ORTHO05D001011 3.7e-12 75.1 57 64.9
FAN22G1741 Fragaria x ananassa HOM05D000066 ORTHO05D001011 3.7e-12 75.1 57 64.9
MD13G1016500 Malus domestica HOM05D000066 ORTHO05D001011 6.4e-12 74.3 64 62.5
DCAR_002665 Daucus carota HOM05D000066 ORTHO05D001011 1.1e-11 73.6 60 55.0
Nitab4.5_0000521g0100 Nicotiana tabacum HOM05D000066 ORTHO05D001011 1.1e-11 73.6 60 55.0
Nitab4.5_0007701g0010 Nicotiana tabacum HOM05D000066 ORTHO05D001011 1.1e-11 73.6 60 61.7
QL03p038881 Quercus lobata HOM05D000066 ORTHO05D001011 1.1e-11 73.6 46 69.6
PGSC0003DMG400022791 Solanum tuberosum HOM05D000066 ORTHO05D001011 1.4e-11 73.2 61 54.1
TWI74G0442 Tripterygium wilfordii HOM05D000066 ORTHO05D001011 1.4e-11 73.2 62 61.3
Ciclev10015872m.g Citrus clementina HOM05D000066 ORTHO05D001011 1.9e-11 72.8 62 62.9
RcHm_v2.0_Chr4g0442121 Rosa chinensis HOM05D000066 ORTHO05D001011 1.9e-11 72.8 60 56.7
FAN07G1451 Fragaria x ananassa HOM05D000066 ORTHO05D001011 2.4e-11 72.4 57 63.2
Nitab4.5_0009123g0010 Nicotiana tabacum HOM05D000066 ORTHO05D001011 2.4e-11 72.4 60 55.0
FAN17G1519 Fragaria x ananassa HOM05D000066 ORTHO05D001011 3.2e-11 72.0 57 63.2
MD16G1014000 Malus domestica HOM05D000066 ORTHO05D001011 3.2e-11 72.0 64 60.9
Cpa.g.sc2.137 Carica papaya HOM05D000066 ORTHO05D001011 4.1e-11 71.6 55 58.2
Glyma.05G138700 Glycine max HOM05D000066 ORTHO05D001011 4.1e-11 71.6 64 57.8
Solyc01g005120.3 Solanum lycopersicum HOM05D000066 ORTHO05D001011 4.1e-11 71.6 46 67.4
Sopen01g001140 Solanum pennellii HOM05D000066 ORTHO05D001011 4.1e-11 71.6 46 67.4
CiPaw.05G158700 Carya illinoinensis HOM05D000066 ORTHO05D001011 5.4e-11 71.2 63 55.6
Duzib268G1396 Durio zibethinus HOM05D000066 ORTHO05D001011 5.4e-11 71.2 53 62.3
Gohir.A13G029900 Gossypium hirsutum HOM05D000066 ORTHO05D001011 5.4e-11 71.2 54 63.0
Gohir.D13G028000 Gossypium hirsutum HOM05D000066 ORTHO05D001011 5.4e-11 71.2 54 63.0
Gorai.013G032000 Gossypium raimondii HOM05D000066 ORTHO05D001011 5.4e-11 71.2 54 63.0
Lsat_1_v5_gn_4_22721 Lactuca sativa HOM05D000066 ORTHO05D001011 5.4e-11 71.2 60 56.7
Lj2g0014431 Lotus japonicus HOM05D000066 ORTHO05D001011 5.4e-11 71.2 61 54.1
DCAR_030304 Daucus carota HOM05D000066 ORTHO05D001011 7.0e-11 70.9 52 55.8
GSVIVG01011603001 Vitis vinifera HOM05D000066 ORTHO05D001011 7.0e-11 70.9 52 61.5
EL10Ac4g09263 Beta vulgaris HOM05D000066 ORTHO05D001011 9.2e-11 70.5 80 45.0
Sabra10G0075100 Salix brachista HOM05D000066 ORTHO05D001011 9.2e-11 70.5 63 58.7
Thecc.02G305100 Theobroma cacao HOM05D000066 ORTHO05D001011 9.2e-11 70.5 45 71.1
Sc10g0004910 Simmondsia chinensis HOM05D000066 ORTHO05D001011 1.2e-10 70.1 61 60.7
Nitab4.5_0000926g0150 Nicotiana tabacum HOM05D000066 ORTHO05D001011 2.0e-10 69.3 60 60.0
Peaxi162Scf00337g00412 Petunia axillaris HOM05D000066 ORTHO05D001011 2.0e-10 69.3 51 60.8
Hund07020 Selenicereus undatus HOM05D000066 ORTHO05D001011 2.0e-10 69.3 56 58.9
COL.COLO4_27592 Corchorus olitorius HOM05D000066 ORTHO05D001011 2.7e-10 68.9 64 56.2
MSTRG.2111 Avicennia marina HOM05D000066 ORTHO05D001011 3.5e-10 68.6 38 76.3
MELO3C005245.2 Cucumis melo HOM05D000066 ORTHO05D001011 3.5e-10 68.6 56 58.9
CsaV3_5G027790 Cucumis sativus L. HOM05D000066 ORTHO05D001011 3.5e-10 68.6 56 58.9
CDE05G2329 Ceratophyllum demersum HOM05D000066 ORTHO05D001011 4.6e-10 68.2 46 60.9
Eucgr.B02660 Eucalyptus grandis HOM05D000066 ORTHO05D001011 4.6e-10 68.2 46 67.4
Phvul.003G014400 Phaseolus vulgaris HOM05D000066 ORTHO05D001011 4.6e-10 68.2 66 47.0
CANSAT78G0060 Cannabis sativa HOM05D000066 ORTHO05D001011 6.0e-10 67.8 58 56.9
ClCG01G006760 Citrullus lanatus HOM05D000066 ORTHO05D001011 6.0e-10 67.8 60 55.0
Glyma.08G093900 Glycine max HOM05D000066 ORTHO05D001011 6.0e-10 67.8 65 53.8
Manes.15G137800 Manihot esculenta HOM05D000066 ORTHO05D001011 6.0e-10 67.8 55 56.4
TPR.G5056 Trifolium pratense HOM05D000066 ORTHO05D001011 6.0e-10 67.8 61 54.1
Ah.06g190480 Amaranthus hybridus HOM05D000066 ORTHO05D001011 7.8e-10 67.4 56 53.6
MSTRG.13643 Avicennia marina HOM05D000066 ORTHO05D001011 7.8e-10 67.4 38 73.7
ECA234G1752 Erigeron canadensis HOM05D000066 ORTHO05D001011 7.8e-10 67.4 45 66.7
Gohir.A03G112700 Gossypium hirsutum HOM05D000066 ORTHO05D001011 7.8e-10 67.4 38 78.9
Gohir.D02G137101 Gossypium hirsutum HOM05D000066 ORTHO05D001011 7.8e-10 67.4 38 78.9
Gorai.005G153200 Gossypium raimondii HOM05D000066 ORTHO05D001011 7.8e-10 67.4 38 78.9
SalBow2G0861 Salvia bowleyana HOM05D000066 ORTHO05D001011 7.8e-10 67.4 60 53.3
Sed0004911 Sechium edule HOM05D000066 ORTHO05D001011 7.8e-10 67.4 58 55.2
HPP92_016715 Vanilla planifolia HOM05D000066 ORTHO05D001011 7.8e-10 67.4 64 54.7
VMungo1215G0234 Vigna mungo HOM05D000066 ORTHO05D001011 7.8e-10 67.4 65 47.7
Lj4g0023590 Lotus japonicus HOM05D000066 ORTHO05D001011 1.0e-09 67.0 63 54.0
Sabra08G0105300 Salix brachista HOM05D000066 ORTHO05D001011 1.0e-09 67.0 36 80.6
CAN.G282.105 Capsicum annuum HOM05D000066 ORTHO05D001011 1.3e-09 66.6 60 51.7
MBI19_g25214_MAGBIO Magnolia biondii HOM05D000066 ORTHO05D001011 1.3e-09 66.6 56 55.4
MBI19_g27891_MAGBIO Magnolia biondii HOM05D000066 ORTHO05D001011 1.3e-09 66.6 56 55.4
Potri.008G138400 Populus trichocarpa HOM05D000066 ORTHO05D001011 1.3e-09 66.6 36 83.3
Lalb_Chr07g0187821 Lupinus albus HOM05D000066 ORTHO05D001011 1.7e-09 66.2 61 54.1
Atru.chr11.747 Acer truncatum HOM05D000066 ORTHO05D001011 2.3e-09 65.9 53 60.4
Phvul.002G182000 Phaseolus vulgaris HOM05D000066 ORTHO05D001011 2.3e-09 65.9 53 56.6
Potri.010G102300 Populus trichocarpa HOM05D000066 ORTHO05D001011 2.3e-09 65.9 66 53.0
Ah.04g159990 Amaranthus hybridus HOM05D000066 ORTHO05D001011 3.0e-09 65.5 72 48.6
unitig_22.g5609 Utricularia gibba HOM05D000066 ORTHO05D001011 3.0e-09 65.5 44 68.2
Solyc04g008210.2 Solanum lycopersicum HOM05D000066 ORTHO05D001011 3.9e-09 65.1 60 53.3
unitig_62.g23749 Utricularia gibba HOM05D000066 ORTHO05D001011 3.9e-09 65.1 47 66.0
VMungo0251G0746 Vigna mungo HOM05D000066 ORTHO05D001011 3.9e-09 65.1 64 53.1
Duzib248G0056 Durio zibethinus HOM05D000066 ORTHO05D001011 5.0e-09 64.7 53 56.6
Sopen04g003330 Solanum pennellii HOM05D000066 ORTHO05D001011 5.0e-09 64.7 60 53.3
Eucgr.G02075 Eucalyptus grandis HOM05D000066 ORTHO05D001011 6.6e-09 64.3 50 62.0
HanXRQChr17g0566121 Helianthus annuus HOM05D000066 ORTHO05D001011 6.6e-09 64.3 62 53.2
Lj6A732T70 Lonicera japonica HOM05D000066 ORTHO05D001011 6.6e-09 64.3 38 73.7
SGA_v2.0_scaffold3G01745 Striga asiatica HOM05D000066 ORTHO05D001011 6.6e-09 64.3 63 49.2
ClCG07G006800 Citrullus lanatus HOM05D000066 ORTHO05D001011 8.6e-09 63.9 61 54.1
Sed0017411 Sechium edule HOM05D000066 ORTHO05D001011 8.6e-09 63.9 56 57.1
Sed0011859 Sechium edule HOM05D000066 ORTHO05D001011 1.1e-08 63.5 56 55.4
Carub.0005s0081 Capsella rubella HOM05D000066 ORTHO05D001011 1.5e-08 63.2 58 56.9
HanXRQChr12g0380681 Helianthus annuus HOM05D000066 ORTHO05D001011 1.5e-08 63.2 52 53.8
Aa31LG2G8060 Aethionema arabicum HOM05D000066 ORTHO05D001011 1.9e-08 62.8 56 51.8
arahy.Tifrunner.gnm1.ann1.MAC6YY Arachis hypogaea HOM05D000066 ORTHO05D001011 1.9e-08 62.8 51 60.8
arahy.Tifrunner.gnm1.ann1.VWTL5B Arachis hypogaea HOM05D000066 ORTHO05D001011 1.9e-08 62.8 51 60.8
CARHR144410 Cardamine hirsuta HOM05D000066 ORTHO05D001011 2.5e-08 62.4 58 56.9
MELO3C018292.2 Cucumis melo HOM05D000066 ORTHO05D001011 2.5e-08 62.4 46 63.0
PGR102G2996 Punica granatum HOM05D000066 ORTHO05D001011 2.5e-08 62.4 45 57.8
AT1G14720 Arabidopsis thaliana HOM05D000066 ORTHO05D001011 3.3e-08 62.0 56 55.4
BraA06t27273Z Brassica rapa HOM05D000066 ORTHO05D001011 3.3e-08 62.0 58 55.2
Manes.17G087100 Manihot esculenta HOM05D000066 ORTHO05D001011 3.3e-08 62.0 52 51.9
Glyma.07G174800 Glycine max HOM05D000066 ORTHO05D001011 4.3e-08 61.6 60 51.7
PGSC0003DMG400029503 Solanum tuberosum HOM05D000066 ORTHO05D001011 5.6e-08 61.2 60 53.3
A02p32410 Brassica napus HOM05D000066 ORTHO05D001011 7.3e-08 60.8 58 53.4
CARHR015250 Cardamine hirsuta HOM05D000066 ORTHO05D001011 7.3e-08 60.8 56 53.6
A06p43980 Brassica napus HOM05D000066 ORTHO05D001011 9.5e-08 60.5 58 53.4
C02p49990 Brassica napus HOM05D000066 ORTHO05D001011 9.5e-08 60.5 58 53.4
BolC2t11078H Brassica oleracea HOM05D000066 ORTHO05D001011 9.5e-08 60.5 58 53.4
CsaV3_5G015380 Cucumis sativus L. HOM05D000066 ORTHO05D001011 9.5e-08 60.5 58 55.2
Lalb_Chr12g0209361 Lupinus albus HOM05D000066 ORTHO05D001011 9.5e-08 60.5 63 49.2
BcaC06g31270 Brassica carinata HOM05D000066 ORTHO05D001011 1.2e-07 60.1 58 51.7
BcaC06g34104 Brassica carinata HOM05D000066 ORTHO05D001011 1.2e-07 60.1 58 53.4
Thhalv10008160m.g Eutrema salsugineum HOM05D000066 ORTHO05D001011 1.2e-07 60.1 56 53.6
AL5G10960 Arabidopsis lyrata HOM05D000066 ORTHO05D001011 1.6e-07 59.7 55 54.5
Os03g0239000 Oryza sativa ssp. japonica HOM05D000066 ORTHO05D001011 1.6e-07 59.7 47 59.6
BcaB07g30369 Brassica carinata HOM05D000066 ORTHO05D001011 2.1e-07 59.3 58 51.7
Cfa015063 Carpinus fangiana HOM05D000066 ORTHO05D001011 2.1e-07 59.3 54 53.7
Thhalv10004560m.g Eutrema salsugineum HOM05D000066 ORTHO05D001011 2.1e-07 59.3 58 51.7
Glyma.20G012300 Glycine max HOM05D000066 ORTHO05D001011 2.1e-07 59.3 38 63.2
TPR.G34569 Trifolium pratense HOM05D000066 ORTHO05D001011 2.1e-07 59.3 41 58.5
C07p32650 Brassica napus HOM05D000066 ORTHO05D001011 2.8e-07 58.9 58 51.7
BolC7t43786H Brassica oleracea HOM05D000066 ORTHO05D001011 2.8e-07 58.9 58 51.7
THA.LOC104823577 Tarenaya hassleriana HOM05D000066 ORTHO05D001011 2.8e-07 58.9 61 52.5
arahy.Tifrunner.gnm1.ann1.D3GWAL Arachis hypogaea HOM05D000066 ORTHO05D001011 3.6e-07 58.5 74 41.9
BraA09t41552Z Brassica rapa HOM05D000066 ORTHO05D001011 3.6e-07 58.5 56 53.6
SHI04276 Sapria himalayana HOM05D000066 ORTHO05D001011 3.6e-07 58.5 50 56.0
BraA02t08259Z Brassica rapa HOM05D000066 ORTHO05D001011 4.7e-07 58.2 58 51.7
Sp1g13160 Schrenkiella parvula HOM05D000066 ORTHO05D001011 4.7e-07 58.2 56 53.6
Sp2g13270 Schrenkiella parvula HOM05D000066 ORTHO05D001011 4.7e-07 58.2 58 50.0
AT2G01850 Arabidopsis thaliana HOM05D000066 ORTHO05D001011 6.2e-07 57.8 58 51.7
BcaC07g41545 Brassica carinata HOM05D000066 ORTHO05D001011 6.2e-07 57.8 56 51.8
A09p61850 Brassica napus HOM05D000066 ORTHO05D001011 6.2e-07 57.8 56 51.8
C08p45490 Brassica napus HOM05D000066 ORTHO05D001011 6.2e-07 57.8 56 51.8
BolC8t52101H Brassica oleracea HOM05D000066 ORTHO05D001011 6.2e-07 57.8 56 51.8
THA.LOC104824120 Tarenaya hassleriana HOM05D000066 ORTHO05D001011 8.0e-07 57.4 38 65.8
HPP92_010986 Vanilla planifolia HOM05D000066 ORTHO05D001011 1.4e-06 56.6 52 53.8
arahy.Tifrunner.gnm1.ann1.K91ZD2 Arachis hypogaea HOM05D000066 ORTHO05D001011 2.3e-06 55.8 74 40.5
PSO210G3327 Papaver somniferum HOM05D000066 ORTHO05D001011 2.3e-06 55.8 56 51.8
Carub.0001s1450 Capsella rubella HOM05D000066 ORTHO05D001011 3.1e-06 55.5 56 50.0
PSO210G2900 Papaver somniferum HOM05D000066 ORTHO05D001011 3.1e-06 55.5 55 54.5
THA.LOC104805096 Tarenaya hassleriana HOM05D000066 ORTHO05D001011 3.1e-06 55.5 58 50.0
AL1G26730 Arabidopsis lyrata HOM05D000066 ORTHO05D001011 5.2e-06 54.7 52 51.9
Medtr1g033420 Medicago truncatula HOM05D000066 ORTHO05D001011 5.2e-06 54.7 40 55.0


User provided reference genes

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