Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g24043 Nelumbo nucifera HOM05D001934 ORTHO05D002139 1.5e-19 98.6 51 100.0
Nn4g24041 Nelumbo nucifera HOM05D001934 ORTHO05D002139 2.7e-13 77.8 49 79.6
RcHm_v2.0_Chr3g0493691 Rosa chinensis HOM05D001934 ORTHO05D002139 1.3e-10 68.9 51 68.6
CiPaw.03G066000 Carya illinoinensis HOM05D001934 ORTHO05D002139 4.8e-10 67.0 51 66.7
arahy.Tifrunner.gnm1.ann1.Q72QFH Arachis hypogaea HOM05D001934 ORTHO05D002139 8.1e-10 66.2 51 60.8
arahy.Tifrunner.gnm1.ann1.TBH1BX Arachis hypogaea HOM05D001934 ORTHO05D002139 8.1e-10 66.2 51 60.8
Sc10g0000990 Simmondsia chinensis HOM05D001934 ORTHO05D002139 8.1e-10 66.2 51 70.6
Psat3g096760 Pisum sativum HOM05D001934 ORTHO05D002139 1.4e-09 65.5 51 64.7
FAN26G0892 Fragaria x ananassa HOM05D001934 ORTHO05D002139 1.8e-09 65.1 51 64.7
Lj1g0010629 Lotus japonicus HOM05D001934 ORTHO05D002139 1.8e-09 65.1 51 64.7
GSVIVG01030942001 Vitis vinifera HOM05D001934 ORTHO05D002139 1.8e-09 65.1 51 64.7
Cfa007877 Carpinus fangiana HOM05D001934 ORTHO05D002139 4.0e-09 63.9 51 62.7
Haze_14199 Corylus avellana HOM05D001934 ORTHO05D002139 4.0e-09 63.9 51 62.7
Medtr7g082860 Medicago truncatula HOM05D001934 ORTHO05D002139 4.0e-09 63.9 51 62.7
Prupe.3G150300 Prunus persica HOM05D001934 ORTHO05D002139 5.3e-09 63.5 51 62.7
FvH4_1g29000 Fragaria vesca HOM05D001934 ORTHO05D002139 6.9e-09 63.2 51 62.7
FAN19G2355 Fragaria x ananassa HOM05D001934 ORTHO05D002139 6.9e-09 63.2 51 62.7
Potri.004G094200 Populus trichocarpa HOM05D001934 ORTHO05D002139 6.9e-09 63.2 51 70.6
Ca_08099_v3 Cicer arietinum L. HOM05D001934 ORTHO05D002139 9.0e-09 62.8 51 60.8
Ciclev10010910m.g Citrus clementina HOM05D001934 ORTHO05D002139 9.0e-09 62.8 51 64.7
MD00G1054100 Malus domestica HOM05D001934 ORTHO05D002139 1.2e-08 62.4 51 60.8
Sabra04G0063400 Salix brachista HOM05D001934 ORTHO05D002139 1.2e-08 62.4 51 70.6
Gohir.A11G166900 Gossypium hirsutum HOM05D001934 ORTHO05D002139 1.5e-08 62.0 51 62.7
Gohir.D11G173200 Gossypium hirsutum HOM05D001934 ORTHO05D002139 2.0e-08 61.6 51 62.7
Gorai.007G185500 Gossypium raimondii HOM05D001934 ORTHO05D002139 2.0e-08 61.6 51 62.7
CSS0011990 Camellia sinensis var. sinensis HOM05D001934 ORTHO05D002139 2.6e-08 61.2 51 62.7
Lj2A437T33 Lonicera japonica HOM05D001934 ORTHO05D002139 3.4e-08 60.8 51 64.7
Thecc.04G125900 Theobroma cacao HOM05D001934 ORTHO05D002139 3.4e-08 60.8 51 62.7
TPR.G28395 Trifolium pratense HOM05D001934 ORTHO05D002139 3.4e-08 60.8 51 58.8
FAN23G2419 Fragaria x ananassa HOM05D001934 ORTHO05D002139 4.4e-08 60.5 51 60.8
Phvul.008G009200 Phaseolus vulgaris HOM05D001934 ORTHO05D002139 4.4e-08 60.5 51 60.8
VMungo1383G1252 Vigna mungo HOM05D001934 ORTHO05D002139 5.8e-08 60.1 51 60.8
Rhsim08G0084300 Rhododendron simsii HOM05D001934 ORTHO05D002139 7.6e-08 59.7 51 62.7
TAR622G1193 Trochodendron aralioides HOM05D001934 ORTHO05D002139 7.6e-08 59.7 51 64.7
Aqoxy3G03985 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 9.9e-08 59.3 51 64.7
Migut.H00252 Erythranthe guttata HOM05D001934 ORTHO05D002139 1.3e-07 58.9 51 56.9
COL.COLO4_03616 Corchorus olitorius HOM05D001934 ORTHO05D002139 1.7e-07 58.5 51 58.8
Cpa.g.sc170.9 Carica papaya HOM05D001934 ORTHO05D002139 2.2e-07 58.2 52 67.3
Cc07_g08410 Coffea canephora HOM05D001934 ORTHO05D002139 2.9e-07 57.8 51 58.8
Hund13697 Selenicereus undatus HOM05D001934 ORTHO05D002139 2.9e-07 57.8 51 62.7
Manes.02G072600 Manihot esculenta HOM05D001934 ORTHO05D002139 3.8e-07 57.4 51 62.7
ATR0691G097 Amborella trichopoda HOM05D001934 ORTHO05D002139 4.9e-07 57.0 50 66.0
CAN.G625.65 Capsicum annuum HOM05D001934 ORTHO05D002139 4.9e-07 57.0 51 60.8
Sopen02g035770 Solanum pennellii HOM05D001934 ORTHO05D002139 4.9e-07 57.0 51 64.7
HPP92_008231 Vanilla planifolia HOM05D001934 ORTHO05D002139 4.9e-07 57.0 51 62.7
HanXRQChr09g0262461 Helianthus annuus HOM05D001934 ORTHO05D002139 6.4e-07 56.6 51 60.8
Hma1.2p1_0500F.1_g167090 Hydrangea macrophylla HOM05D001934 ORTHO05D002139 6.4e-07 56.6 51 62.7
Nitab4.5_0008597g0010 Nicotiana tabacum HOM05D001934 ORTHO05D002139 8.4e-07 56.2 51 56.9
ECA232G4925 Erigeron canadensis HOM05D001934 ORTHO05D002139 1.1e-06 55.8 51 56.9
Atru.chr1.1572 Acer truncatum HOM05D001934 ORTHO05D002139 1.4e-06 55.5 51 60.8
PGR004G2572 Punica granatum HOM05D001934 ORTHO05D002139 1.9e-06 55.1 51 62.7
vmacro18063 Vaccinium macrocarpon HOM05D001934 ORTHO05D002139 1.9e-06 55.1 51 58.8
Oeu047432.1 Olea europaea HOM05D001934 ORTHO05D002139 2.4e-06 54.7 51 56.9
SalBow3G4015 Salvia bowleyana HOM05D001934 ORTHO05D002139 3.2e-06 54.3 51 56.9
SEGI_13359 Sequoiadendron giganteum HOM05D001934 ORTHO05D002139 3.2e-06 54.3 51 56.9
EL10Ac2g04516 Beta vulgaris HOM05D001934 ORTHO05D002139 9.3e-06 52.8 51 56.9


User provided reference genes

Program Settings