Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 0.0e+00 1496.1 986 100.0
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.2e-264 915.2 998 69.4
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 6.8e-262 907.9 997 69.2
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 1.6e-234 817.0 1009 63.2
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 5.1e-217 758.8 836 65.4
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 3.3e-216 756.1 1010 61.0
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 5.6e-216 755.4 999 57.1
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.4e-214 750.7 801 68.2
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 4.0e-214 749.2 993 60.1
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 8.4e-212 741.5 1004 58.5
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 5.1e-209 732.3 947 62.0
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.3e-207 727.6 941 58.7
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.3e-204 717.6 1003 62.7
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.9e-203 713.8 855 53.3
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 2.4e-203 713.4 920 58.9
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.4e-203 713.4 998 58.5
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 3.5e-202 709.5 972 57.8
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.5e-200 704.1 917 62.1
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 8.1e-199 698.4 996 56.6
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 1.4e-198 697.6 953 55.2
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 2.0e-197 693.7 991 55.8
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 1.7e-196 690.6 973 59.0
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 3.2e-195 686.4 957 59.4
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 9.3e-195 684.9 784 69.0
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 9.3e-195 684.9 782 67.6
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 5.1e-193 679.1 1016 59.7
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 7.4e-192 675.2 940 57.6
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.4e-192 675.2 932 58.6
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.3e-191 674.5 1021 54.7
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.6e-191 674.1 997 54.7
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 2.8e-191 673.3 1006 58.4
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 3.7e-191 672.9 790 66.8
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 1.4e-190 671.0 926 57.1
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.4e-190 670.2 824 62.4
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.9e-188 663.3 799 64.0
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 4.9e-188 662.5 810 58.8
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 1.4e-187 661.0 981 55.5
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.9e-187 660.6 940 57.3
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 4.2e-187 659.4 799 63.7
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 7.9e-186 655.2 948 57.3
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 2.1e-183 647.1 845 57.4
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 4.1e-182 642.9 1058 55.3
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 5.3e-182 642.5 927 58.9
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 6.9e-182 642.1 1000 51.2
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 6.9e-182 642.1 925 58.1
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 2.0e-181 640.6 1086 50.8
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 3.4e-181 639.8 983 53.1
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.9e-181 639.0 782 63.4
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 2.2e-180 637.1 781 65.6
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 6.5e-180 635.6 951 55.3
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 5.5e-179 632.5 1030 47.4
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 5.5e-179 632.5 822 60.5
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 1.2e-178 631.3 1014 50.4
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 8.7e-177 625.2 958 52.4
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.5e-176 624.4 1000 53.3
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 2.5e-176 623.6 998 54.5
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 5.7e-176 622.5 793 61.0
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 1.3e-175 621.3 933 52.5
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 3.7e-175 619.8 1018 53.6
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 4.8e-175 619.4 980 58.0
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.8e-175 619.4 898 52.1
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 1.4e-174 617.8 782 63.0
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 5.3e-174 615.9 783 63.2
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 2.1e-170 604.0 998 48.7
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 1.4e-169 601.3 971 51.6
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 5.1e-169 599.4 768 62.0
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 2.6e-168 597.0 992 52.5
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 9.7e-168 595.1 970 53.8
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.7e-167 594.3 997 51.5
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 2.4e-166 590.5 782 62.7
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 5.3e-166 589.3 782 62.3
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.2e-165 588.2 777 58.0
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 7.7e-165 585.5 919 56.0
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 1.1e-163 581.6 785 58.3
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 1.4e-163 581.3 923 49.8
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 1.8e-161 574.3 947 54.5
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 3.3e-160 570.1 992 51.5
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 1.1e-158 565.1 906 52.9
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 4.1e-158 563.1 843 51.2
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.1e-155 555.1 791 57.4
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 3.2e-155 553.5 945 53.2
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 3.2e-155 553.5 778 58.1
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 6.7e-153 545.8 940 50.5
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 8.8e-153 545.4 768 53.5
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 7.5e-152 542.3 798 55.0
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 3.1e-150 537.0 778 56.6
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 4.5e-149 533.1 970 43.5
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 6.1e-146 522.7 791 59.4
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 2.6e-144 517.3 843 56.9
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 1.4e-142 511.5 1000 50.5
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 4.5e-141 506.5 955 50.8
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 7.7e-141 505.8 735 52.1
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 6.5e-140 502.7 950 50.2
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.1e-138 497.7 996 48.9
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 4.7e-138 496.5 983 48.0
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 5.2e-137 493.0 818 49.5
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 5.2e-137 493.0 989 50.2
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 2.8e-135 487.3 938 49.3
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 3.7e-135 486.9 831 50.3
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 1.4e-134 485.0 952 49.6
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.6e-133 481.5 969 48.8
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 5.0e-132 476.5 832 55.0
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 3.3e-131 473.8 925 50.6
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 6.8e-129 466.1 973 44.3
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.7e-127 461.5 843 51.0
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 2.2e-127 461.1 941 49.3
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 3.7e-127 460.3 793 51.6
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.0e-124 452.2 876 47.7
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.9e-123 448.0 1008 45.7
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 2.5e-123 447.6 957 47.6
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 2.5e-123 447.6 957 47.6
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 5.2e-121 439.9 789 54.6
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 2.0e-120 438.0 805 50.2
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 2.6e-120 437.6 961 48.2
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 3.0e-116 424.1 1010 45.3
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 8.9e-113 412.5 895 47.2
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 3.9e-108 397.1 731 57.2
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 9.2e-102 375.9 834 47.8
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 1.7e-100 371.7 701 47.1
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.5e-99 368.6 837 47.4
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 5.4e-94 350.1 782 48.7
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 2.1e-93 348.2 285 64.9
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 6.4e-87 326.6 293 63.1
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 5.6e-83 313.5 443 54.6
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.8e-81 308.5 421 53.7
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 5.5e-78 297.0 253 68.4
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 2.7e-77 294.7 589 54.0
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 2.4e-73 281.6 277 62.8
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.2e-70 271.2 826 39.0
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.6e-69 267.3 231 68.4
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.6e-64 251.5 230 61.7
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.0e-55 223.0 557 41.3
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 5.3e-49 200.7 160 68.8
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-44 184.9 289 46.4
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 3.7e-42 177.9 130 73.8
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 3.4e-27 128.3 71 90.1
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.7e-23 115.9 160 50.6
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 5.0e-23 114.4 73 78.1
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 1.0e-20 106.7 127 47.2
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 8.3e-18 97.1 148 43.2
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 9.2e-17 93.6 188 37.2
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 1.7e-15 89.4 106 44.3
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 2.3e-15 89.0 72 65.3
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 8.6e-15 87.0 117 47.9
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.6e-13 82.8 141 37.6
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 9.8e-11 73.6 191 32.5
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 2.3e-07 62.4 117 41.9
PSO339G4348 Papaver somniferum HOM05D031134 ORTHO05D302392 1.1e-06 60.1 200 31.0
PSO339G1828 Papaver somniferum HOM05D031134 ORTHO05D301998 1.5e-06 59.7 200 30.5
PSO339G5906 Papaver somniferum HOM05D031134 ORTHO05D302295 1.5e-06 59.7 200 30.5
PSO339G2267 Papaver somniferum HOM05D004266 ORTHO05D005151 9.5e-06 57.0 93 29.0
PSO339G5784 Papaver somniferum HOM05D004266 ORTHO05D005151 9.5e-06 57.0 93 29.0


User provided reference genes

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