Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 1.3e-126 456.4 234 100.0
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.0e-83 313.9 225 72.0
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 5.1e-83 311.6 225 71.6
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 1.5e-82 310.1 234 70.5
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.3e-82 308.9 229 70.7
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 5.6e-82 308.1 228 71.5
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 5.6e-82 308.1 228 71.5
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 3.6e-81 305.4 230 69.6
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 1.1e-80 303.9 237 67.5
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 1.1e-80 303.9 232 71.1
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 1.8e-80 303.1 233 70.0
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 3.1e-80 302.4 234 69.2
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 3.1e-80 302.4 235 68.9
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.6e-79 299.3 236 67.4
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.4e-79 298.9 225 68.9
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 4.5e-79 298.5 235 66.8
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 5.8e-79 298.1 233 67.8
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 7.6e-79 297.7 228 68.9
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 1.3e-78 297.0 234 67.9
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 2.9e-78 295.8 232 67.7
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.9e-78 295.0 233 67.0
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 6.4e-78 294.7 233 67.4
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 8.4e-78 294.3 236 66.9
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 8.4e-78 294.3 236 66.9
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 8.4e-78 294.3 250 65.6
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 1.9e-77 293.1 227 69.2
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 2.4e-77 292.7 235 66.4
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 3.2e-77 292.4 233 66.1
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 4.2e-77 292.0 233 67.4
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 5.4e-77 291.6 233 67.0
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 9.3e-77 290.8 233 67.8
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 9.3e-77 290.8 235 68.1
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 1.2e-76 290.4 234 67.5
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.6e-76 290.0 233 67.0
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 2.1e-76 289.7 233 65.2
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 2.7e-76 289.3 235 68.1
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 4.6e-76 288.5 225 66.2
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.0e-75 287.3 233 66.5
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 1.0e-75 287.3 237 67.9
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 1.0e-75 287.3 227 69.2
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 1.3e-75 287.0 233 66.5
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.8e-75 286.6 233 67.4
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 2.3e-75 286.2 236 67.8
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 2.3e-75 286.2 234 67.1
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 2.3e-75 286.2 233 66.1
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 3.0e-75 285.8 236 68.2
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 3.0e-75 285.8 234 67.1
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 3.0e-75 285.8 234 65.4
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 3.0e-75 285.8 227 69.2
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 5.1e-75 285.0 233 66.1
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 5.1e-75 285.0 225 66.2
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 8.7e-75 284.3 233 66.5
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 8.7e-75 284.3 225 68.9
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 8.7e-75 284.3 235 66.8
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.1e-74 283.9 228 65.4
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 1.9e-74 283.1 228 66.7
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 2.5e-74 282.7 232 63.8
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 2.5e-74 282.7 233 64.8
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 3.3e-74 282.3 225 68.0
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 5.6e-74 281.6 236 67.4
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 5.6e-74 281.6 236 67.4
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 5.6e-74 281.6 237 67.5
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.6e-74 281.6 233 64.8
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.6e-74 281.6 233 64.8
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 5.6e-74 281.6 228 64.9
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 5.6e-74 281.6 233 65.2
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 5.6e-74 281.6 235 66.8
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 7.4e-74 281.2 225 65.3
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.6e-74 280.8 234 64.5
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 9.6e-74 280.8 233 63.9
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 1.3e-73 280.4 236 67.4
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.3e-73 280.4 225 68.0
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.6e-73 280.0 246 61.8
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.6e-73 280.0 234 63.7
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.6e-73 280.0 235 63.8
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 2.1e-73 279.6 233 64.4
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.8e-73 279.3 234 66.7
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 2.8e-73 279.3 226 65.9
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.6e-73 278.9 223 65.5
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 3.6e-73 278.9 225 66.2
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 3.6e-73 278.9 244 62.3
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 4.8e-73 278.5 236 66.9
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 4.8e-73 278.5 224 66.5
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 8.1e-73 277.7 226 67.7
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 8.1e-73 277.7 235 63.8
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 8.1e-73 277.7 235 63.8
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 1.1e-72 277.3 225 65.3
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.4e-72 276.9 235 63.8
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 2.4e-72 276.2 232 63.4
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 3.1e-72 275.8 233 64.8
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 4.0e-72 275.4 236 66.5
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 4.0e-72 275.4 227 66.1
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 5.3e-72 275.0 225 64.9
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 9.0e-72 274.2 265 57.7
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.2e-71 273.9 230 62.6
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.2e-71 273.9 233 63.5
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 1.2e-71 273.9 234 62.4
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 2.0e-71 273.1 226 63.7
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.0e-71 273.1 233 63.1
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.0e-71 273.1 233 63.5
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 2.6e-71 272.7 225 63.6
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 4.5e-71 271.9 229 62.4
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 5.8e-71 271.6 221 65.6
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 7.6e-71 271.2 233 62.7
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 7.6e-71 271.2 233 62.7
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 2.9e-70 269.2 227 63.4
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 3.8e-70 268.9 294 53.1
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 3.8e-70 268.9 237 61.6
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 6.4e-70 268.1 225 64.9
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 8.4e-70 267.7 234 62.8
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.4e-69 266.9 239 60.7
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 1.9e-69 266.5 234 62.4
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.9e-69 266.5 232 62.9
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 1.9e-69 266.5 219 63.0
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 5.5e-69 265.0 227 63.0
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 7.1e-69 264.6 227 63.9
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 9.3e-69 264.2 224 65.2
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.2e-68 263.8 234 63.2
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 3.5e-68 262.3 227 62.1
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.5e-68 262.3 240 61.2
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 6.7e-67 258.1 295 52.5
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 2.5e-66 256.1 197 66.5
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 3.3e-66 255.8 219 61.2
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 1.1e-64 250.8 223 60.5
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 1.8e-64 250.0 238 60.1
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 9.0e-64 247.7 228 63.2
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 2.6e-63 246.1 224 61.2
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 4.2e-61 238.8 225 60.9
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 9.3e-61 237.7 192 66.7
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 2.7e-60 236.1 202 60.9
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 4.6e-60 235.3 196 63.8
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 7.9e-60 234.6 232 57.8
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 1.8e-59 233.4 280 51.4
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.3e-59 233.0 285 49.5
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 6.3e-57 224.9 203 62.1
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 5.9e-55 218.4 226 56.2
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.3e-51 207.2 215 56.3
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 8.7e-51 204.5 139 79.1
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 7.4e-50 201.4 221 49.8
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 9.7e-50 201.1 221 50.2
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.6e-49 200.3 261 47.1
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 3.1e-48 196.1 128 78.1
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 5.3e-48 195.3 183 61.2
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.3e-48 195.3 231 51.1
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.6e-47 193.0 230 52.2
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 2.9e-46 189.5 120 75.8
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 2.5e-45 186.4 224 49.6
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 4.2e-45 185.7 228 50.0
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 3.9e-43 179.1 193 54.9
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 8.8e-43 177.9 135 68.1
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 4.4e-42 175.6 117 76.1
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 2.2e-41 173.3 189 50.3
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 2.8e-41 172.9 138 65.9
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.8e-41 172.9 164 60.4
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 2.9e-38 162.9 141 62.4
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.6e-36 157.1 201 49.3
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.1e-36 156.8 136 61.8
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 4.7e-36 155.6 105 74.3
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 4.7e-36 155.6 105 74.3
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 8.8e-35 151.4 225 41.8
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.3e-34 149.4 166 54.8
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.2e-29 132.5 86 73.3
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 1.6e-28 130.6 101 67.3
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 3.3e-26 122.9 69 81.2
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.8e-24 117.1 72 75.0
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 2.0e-23 113.6 134 51.5
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.8e-22 109.4 145 51.7
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 7.2e-21 105.1 176 42.0
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 9.4e-21 104.8 76 76.3
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.7e-20 103.2 188 36.2
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.4e-19 100.9 67 74.6
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 1.8e-19 100.5 134 47.8
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.2e-17 93.6 168 35.7
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 3.8e-14 82.8 75 62.7
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 2.8e-12 76.6 45 75.6
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.5e-10 70.9 101 42.6
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.9e-07 58.9 61 49.2


User provided reference genes

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