Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.1e-262 909.4 457 100.0
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 9.9e-192 673.7 439 78.6
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 4.8e-178 628.2 442 74.4
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.1e-177 627.1 445 73.3
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 1.7e-175 619.8 449 69.9
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 5.0e-175 618.2 449 71.0
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 1.6e-173 613.2 449 69.3
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.3e-172 609.4 438 72.4
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 8.7e-172 607.4 444 70.3
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 2.5e-171 605.9 442 70.1
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 1.1e-169 600.5 454 68.9
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.4e-169 600.1 487 66.9
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 1.8e-169 599.7 437 71.4
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 4.1e-169 598.6 448 69.2
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 6.9e-169 597.8 434 69.6
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 2.0e-168 596.3 434 69.8
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 5.9e-168 594.7 441 71.7
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 1.1e-166 590.5 437 70.0
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 1.1e-166 590.5 437 71.2
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 1.1e-166 590.5 445 70.1
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.4e-166 590.1 443 69.1
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 3.2e-166 589.0 441 70.7
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 4.2e-166 588.6 440 70.0
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 1.6e-165 586.6 437 70.3
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 2.1e-165 586.3 448 69.0
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 6.1e-165 584.7 446 69.7
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 3.0e-164 582.4 435 70.6
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 3.0e-164 582.4 439 69.2
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 3.9e-164 582.0 446 69.1
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 6.7e-164 581.3 442 69.0
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.5e-163 580.1 439 69.0
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 2.0e-163 579.7 439 69.0
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 2.0e-163 579.7 440 69.5
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.6e-163 579.3 449 68.4
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 2.8e-162 575.9 457 67.2
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 2.8e-162 575.9 439 68.8
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 3.7e-162 575.5 437 67.7
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 4.8e-162 575.1 440 67.5
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 1.8e-161 573.2 440 69.1
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 2.4e-161 572.8 449 68.2
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 2.4e-161 572.8 407 70.8
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 3.1e-161 572.4 444 68.2
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.3e-161 571.6 449 67.5
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 5.3e-161 571.6 438 67.1
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 9.1e-161 570.9 445 67.2
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.0e-160 569.7 447 67.3
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 2.6e-160 569.3 441 68.9
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 4.5e-160 568.5 439 67.2
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 4.5e-160 568.5 442 66.1
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.7e-159 566.6 452 66.4
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 2.2e-159 566.2 445 68.8
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 3.8e-159 565.5 442 66.3
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 6.5e-159 564.7 398 73.1
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 8.5e-159 564.3 418 69.1
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.1e-158 563.9 442 67.4
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 1.1e-158 563.9 438 66.9
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.9e-158 563.1 413 70.7
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 3.2e-158 562.4 452 66.6
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 1.2e-157 560.5 440 68.0
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.8e-156 556.6 438 66.9
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.8e-156 556.6 437 66.8
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 3.0e-156 555.8 415 69.4
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 8.8e-156 554.3 444 65.8
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 8.8e-156 554.3 430 66.5
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 1.5e-155 553.5 444 65.5
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 2.0e-155 553.1 429 66.9
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 4.4e-155 552.0 446 66.1
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 4.4e-155 552.0 442 65.8
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 5.7e-155 551.6 444 65.5
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 7.4e-155 551.2 441 66.4
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 4.8e-154 548.5 439 66.7
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 1.6e-152 543.5 450 65.3
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 3.5e-152 542.3 350 77.7
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.3e-151 540.4 338 80.2
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 1.2e-149 533.9 451 63.4
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.1e-149 533.1 380 72.4
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 3.6e-149 532.3 380 71.1
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 9.7e-147 524.2 464 61.0
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.3e-146 523.9 440 62.7
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.8e-146 522.7 436 65.4
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 2.4e-145 519.6 414 66.7
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 5.9e-144 515.0 490 59.2
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 7.7e-144 514.6 436 61.2
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 1.3e-143 513.8 355 73.5
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 5.0e-143 511.9 312 82.4
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 1.1e-142 510.8 514 55.8
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 3.6e-141 505.8 442 61.8
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 4.0e-140 502.3 444 61.5
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.0e-139 500.0 454 60.1
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 8.0e-133 478.0 418 61.7
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.6e-131 473.0 344 69.2
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 4.1e-129 465.7 383 64.5
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 1.2e-128 464.2 356 66.9
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.3e-127 459.9 388 63.1
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 1.2e-125 454.1 309 77.0
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.3e-124 449.9 459 55.6
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 4.0e-124 449.1 442 56.8
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 4.0e-124 449.1 442 57.9
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 1.2e-123 447.6 356 65.4
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 5.4e-121 438.7 312 68.6
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 1.1e-116 424.5 352 63.9
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 5.0e-111 405.6 250 76.8
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 1.1e-102 377.9 405 53.1
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 3.3e-102 376.3 302 63.6
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 4.7e-101 372.5 456 48.0
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 3.2e-97 359.8 270 70.7
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 4.1e-97 359.4 422 49.1
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 7.8e-96 355.1 437 50.3
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.3e-94 349.4 363 51.8
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.4e-92 343.6 245 71.8
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 7.8e-88 328.6 343 50.1
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.6e-85 320.9 207 73.9
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 2.0e-75 287.3 329 50.2
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 4.9e-74 282.7 262 57.6
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 1.1e-73 281.6 365 47.4
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.2e-72 278.1 195 71.3
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.3e-61 241.5 291 49.5
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 5.0e-58 229.6 344 41.0
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 9.7e-54 215.3 420 34.0
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 4.2e-33 146.7 103 73.8
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 3.5e-27 127.1 79 78.5
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.5e-26 122.5 177 41.8
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 3.4e-22 110.5 58 84.5
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 4.4e-22 110.2 64 79.7
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 9.8e-22 109.0 138 50.0
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.4e-20 104.4 92 60.9
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 1.3e-18 98.6 159 41.5
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.7e-18 98.2 225 32.9
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.0e-15 89.0 89 51.7
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.5e-14 85.1 95 47.4
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 4.1e-12 77.0 56 64.3
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 1.5e-09 68.6 61 57.4
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 4.3e-09 67.0 169 35.5
BcaB03g15197 Brassica carinata HOM05D063035 ORTHO05D093409 5.8e-06 56.6 106 41.5


User provided reference genes

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