Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn3g20653 Nelumbo nucifera HOM05D001053 ORTHO05D004820 3.9e-47 191.0 92 100.0
Nn3g17442 Nelumbo nucifera HOM05D001053 ORTHO05D004820 1.1e-33 146.4 91 83.5
Nn1g01000 Nelumbo nucifera HOM05D001651 ORTHO05D000277 6.1e-32 140.6 88 85.2
TAR629G3345 Trochodendron aralioides HOM05D001053 ORTHO05D004820 7.7e-27 123.6 92 72.8
GSVIVG01007870001 Vitis vinifera HOM05D001053 ORTHO05D004820 4.2e-25 117.9 93 65.6
vmacro17607 Vaccinium macrocarpon HOM05D001053 ORTHO05D004820 5.5e-25 117.5 92 67.4
Actinidia04826 Actinidia chinensis HOM05D001053 ORTHO05D004820 9.4e-25 116.7 93 67.7
Dinv17408 Davidia involucrata HOM05D001053 ORTHO05D004820 1.2e-24 116.3 90 66.7
Prupe.5G204500 Prunus persica HOM05D001053 ORTHO05D004820 3.0e-23 111.7 93 64.5
Rhsim08G0146300 Rhododendron simsii HOM05D001053 ORTHO05D004820 5.2e-23 110.9 90 66.7
COL.COLO4_06864 Corchorus olitorius HOM05D001053 ORTHO05D004820 6.8e-23 110.5 87 66.7
CiPaw.11G052800 Carya illinoinensis HOM05D001053 ORTHO05D004820 1.2e-22 109.8 84 65.5
Atru.chr9.430 Acer truncatum HOM05D001053 ORTHO05D004820 1.5e-22 109.4 93 62.4
Hma1.2p1_0060F.1_g033160 Hydrangea macrophylla HOM05D001053 ORTHO05D004820 1.5e-22 109.4 93 63.4
Potri.004G092900 Populus trichocarpa HOM05D001053 ORTHO05D004820 2.0e-22 109.0 93 61.3
Lj5C103T5 Lonicera japonica HOM05D001053 ORTHO05D004820 2.6e-22 108.6 89 62.9
TWI81G0708 Tripterygium wilfordii HOM05D001053 ORTHO05D004820 2.6e-22 108.6 90 61.1
Ciclev10019240m.g Citrus clementina HOM05D001053 ORTHO05D004820 3.4e-22 108.2 93 63.4
QL10p019416 Quercus lobata HOM05D001053 ORTHO05D004820 3.4e-22 108.2 84 66.7
Duzib205G1512 Durio zibethinus HOM05D001053 ORTHO05D004820 4.4e-22 107.8 87 67.8
Sc04g0004320 Simmondsia chinensis HOM05D001053 ORTHO05D004820 9.8e-22 106.7 91 64.8
Aqoxy3G03637 Aquilegia oxysepala HOM05D001053 ORTHO05D004820 1.3e-21 106.3 93 59.1
Aa31LG11G2250 Aethionema arabicum HOM05D001053 ORTHO05D004820 1.7e-21 105.9 94 60.6
Duzib068G1187 Durio zibethinus HOM05D001053 ORTHO05D004820 1.7e-21 105.9 92 60.9
FAN13G0112 Fragaria x ananassa HOM05D001053 ORTHO05D004820 1.7e-21 105.9 86 64.0
Manes.06G085100 Manihot esculenta HOM05D001053 ORTHO05D004820 1.7e-21 105.9 93 58.1
Thecc.03G101100 Theobroma cacao HOM05D001053 ORTHO05D004820 1.7e-21 105.9 87 64.4
C07p44790 Brassica napus HOM05D001053 ORTHO05D004820 2.2e-21 105.5 94 60.6
FvH4_5g13910 Fragaria vesca HOM05D001053 ORTHO05D004820 2.2e-21 105.5 86 62.8
FAN08G0910 Fragaria x ananassa HOM05D001053 ORTHO05D004820 2.2e-21 105.5 86 62.8
FAN18G3650 Fragaria x ananassa HOM05D001053 ORTHO05D004820 2.2e-21 105.5 86 62.8
Gohir.A03G069900 Gossypium hirsutum HOM05D001053 ORTHO05D004820 2.2e-21 105.5 92 60.9
Gohir.D03G096500 Gossypium hirsutum HOM05D001053 ORTHO05D004820 2.2e-21 105.5 92 60.9
BcaC06g33180 Brassica carinata HOM05D001053 ORTHO05D004820 3.7e-21 104.8 94 60.6
A03p46750 Brassica napus HOM05D001053 ORTHO05D004820 3.7e-21 104.8 94 60.6
BraA03t13797Z Brassica rapa HOM05D001053 ORTHO05D004820 3.7e-21 104.8 94 60.6
AUR62021568 Chenopodium quinoa HOM05D001053 ORTHO05D004820 3.7e-21 104.8 92 59.8
arahy.Tifrunner.gnm1.ann1.ZD7DCY Arachis hypogaea HOM05D001053 ORTHO05D004820 4.8e-21 104.4 86 64.0
CANSAT80G2151 Cannabis sativa HOM05D001053 ORTHO05D004820 4.8e-21 104.4 80 62.5
Haze_07717 Corylus avellana HOM05D001053 ORTHO05D004820 4.8e-21 104.4 93 63.4
Gorai.003G101100 Gossypium raimondii HOM05D001053 ORTHO05D004820 4.8e-21 104.4 87 64.4
A09p07210 Brassica napus HOM05D001053 ORTHO05D004820 6.3e-21 104.0 92 59.8
BolC7t45003H Brassica oleracea HOM05D001053 ORTHO05D004820 6.3e-21 104.0 91 60.4
BraA09t36371Z Brassica rapa HOM05D001053 ORTHO05D004820 6.3e-21 104.0 92 59.8
RcHm_v2.0_Chr7g0183031 Rosa chinensis HOM05D001053 ORTHO05D004820 6.3e-21 104.0 93 57.0
Sp2g24350 Schrenkiella parvula HOM05D001053 ORTHO05D004820 8.3e-21 103.6 92 60.9
THA.LOC104801191 Tarenaya hassleriana HOM05D001053 ORTHO05D004820 8.3e-21 103.6 80 63.8
arahy.Tifrunner.gnm1.ann1.T7KHNQ Arachis hypogaea HOM05D001053 ORTHO05D004820 1.4e-20 102.8 86 62.8
BcaC04g23464 Brassica carinata HOM05D001053 ORTHO05D004820 1.4e-20 102.8 92 59.8
BolC9t53720H Brassica oleracea HOM05D001053 ORTHO05D004820 1.4e-20 102.8 92 59.8
ECA232G4674 Erigeron canadensis HOM05D001053 ORTHO05D004820 1.4e-20 102.8 94 58.5
Thhalv10003787m.g Eutrema salsugineum HOM05D001053 ORTHO05D004820 1.4e-20 102.8 92 60.9
AUR62021569 Chenopodium quinoa HOM05D001053 ORTHO05D004820 1.8e-20 102.4 92 60.9
Carub.0008s2174 Capsella rubella HOM05D001053 ORTHO05D004820 2.4e-20 102.1 91 61.5
MD06G1202300 Malus domestica HOM05D001053 ORTHO05D004820 2.4e-20 102.1 93 55.9
AT5G61060 Arabidopsis thaliana HOM05D001053 ORTHO05D004820 3.1e-20 101.7 91 60.4
Eucgr.K02528 Eucalyptus grandis HOM05D001053 ORTHO05D004820 3.1e-20 101.7 93 58.1
Medtr4g109500 Medicago truncatula HOM05D001053 ORTHO05D004820 3.1e-20 101.7 93 58.1
PSO017G5497 Papaver somniferum HOM05D001053 ORTHO05D004820 3.1e-20 101.7 95 56.8
C09p08060 Brassica napus HOM05D001053 ORTHO05D004820 5.4e-20 100.9 92 58.7
CARHR274760 Cardamine hirsuta HOM05D001053 ORTHO05D004820 5.4e-20 100.9 94 57.4
AUR62008521 Chenopodium quinoa HOM05D001053 ORTHO05D004820 5.4e-20 100.9 92 58.7
HanXRQChr16g0502421 Helianthus annuus HOM05D001053 ORTHO05D004820 5.4e-20 100.9 88 56.8
MD14G1211400 Malus domestica HOM05D001053 ORTHO05D004820 5.4e-20 100.9 93 59.1
AL8G37710 Arabidopsis lyrata HOM05D001053 ORTHO05D004820 7.0e-20 100.5 91 60.4
Psat0s3618g0040 Pisum sativum HOM05D001053 ORTHO05D004820 7.0e-20 100.5 93 54.8
Cfa019326 Carpinus fangiana HOM05D001053 ORTHO05D004820 9.1e-20 100.1 93 61.3
Peaxi162Scf00201g00236 Petunia axillaris HOM05D001053 ORTHO05D004820 9.1e-20 100.1 93 58.1
TPR.G2048 Trifolium pratense HOM05D001053 ORTHO05D004820 9.1e-20 100.1 80 60.0
CAN.G1228.29 Capsicum annuum HOM05D001053 ORTHO05D004820 1.6e-19 99.4 91 60.4
Lsat_1_v5_gn_4_111000 Lactuca sativa HOM05D001053 ORTHO05D004820 1.6e-19 99.4 87 59.8
EL10Ac5g11123 Beta vulgaris HOM05D001053 ORTHO05D004820 2.0e-19 99.0 80 60.0
MELO3C017221.2 Cucumis melo HOM05D001053 ORTHO05D004820 2.0e-19 99.0 91 58.2
Lj4g0023799 Lotus japonicus HOM05D001053 ORTHO05D004820 2.0e-19 99.0 86 58.1
Cpa.g.sc94.49 Carica papaya HOM05D001053 ORTHO05D004820 2.7e-19 98.6 87 60.9
ECA232G3750 Erigeron canadensis HOM05D001053 ORTHO05D004820 2.7e-19 98.6 86 60.5
Sabra04G0062400 Salix brachista HOM05D001053 ORTHO05D004820 3.5e-19 98.2 77 63.6
Carub.0008s2175 Capsella rubella HOM05D001053 ORTHO05D004820 4.5e-19 97.8 91 59.3
Glyma.05G021400 Glycine max HOM05D001053 ORTHO05D004820 4.5e-19 97.8 86 60.5
PGR044G1429 Punica granatum HOM05D001053 ORTHO05D004820 4.5e-19 97.8 93 53.8
SGA_v2.0_scaffold313G48312 Striga asiatica HOM05D000001 ORTHO05D004820 5.9e-19 97.4 89 58.4
Ca_21779_v3 Cicer arietinum L. HOM05D001053 ORTHO05D004820 1.0e-18 96.7 81 61.7
Cc00_g07600 Coffea canephora HOM05D001053 ORTHO05D004820 1.0e-18 96.7 80 63.8
Glyma.17G078000 Glycine max HOM05D001053 ORTHO05D004820 1.0e-18 96.7 86 59.3
ClCG06G015680 Citrullus lanatus HOM05D001053 ORTHO05D004820 1.3e-18 96.3 91 56.0
Lalb_Chr12g0197171 Lupinus albus HOM05D001053 ORTHO05D004820 1.7e-18 95.9 80 60.0
Eucgr.B01265 Eucalyptus grandis HOM05D001053 ORTHO05D004820 2.9e-18 95.1 93 54.8
Nitab4.5_0001485g0180 Nicotiana tabacum HOM05D001053 ORTHO05D004820 2.9e-18 95.1 93 57.0
CsaV3_1G002870 Cucumis sativus L. HOM05D001053 ORTHO05D004820 3.8e-18 94.7 91 56.0
MSTRG.22987 Avicennia marina HOM05D001053 ORTHO05D004820 6.5e-18 94.0 90 54.4
Migut.I00311 Erythranthe guttata HOM05D001053 ORTHO05D004820 6.5e-18 94.0 89 58.4
Sed0000594 Sechium edule HOM05D001053 ORTHO05D004820 6.5e-18 94.0 91 54.9
Phvul.003G185200 Phaseolus vulgaris HOM05D001053 ORTHO05D004820 1.9e-17 92.4 80 57.5
Eucgr.K02530 Eucalyptus grandis HOM05D001053 ORTHO05D004820 2.5e-17 92.0 93 54.8
ATR0064G039 Amborella trichopoda HOM05D001053 ORTHO05D004820 3.2e-17 91.7 79 58.2
Nitab4.5_0012564g0010 Nicotiana tabacum HOM05D001053 ORTHO05D004820 3.2e-17 91.7 93 55.9
Solyc03g115150.4 Solanum lycopersicum HOM05D001053 ORTHO05D004820 1.6e-16 89.4 94 52.1
Ah.11g047830 Amaranthus hybridus HOM05D001053 ORTHO05D004820 2.8e-16 88.6 88 52.3
A02p41350 Brassica napus HOM05D001053 ORTHO05D004820 1.4e-15 86.3 77 57.1
Sopen03g034210 Solanum pennellii HOM05D001053 ORTHO05D004820 1.8e-15 85.9 93 51.6
Sed0006061 Sechium edule HOM05D001053 ORTHO05D004820 2.3e-15 85.5 91 51.6
PSO017G2770 Papaver somniferum HOM05D001053 ORTHO05D004820 4.0e-15 84.7 81 56.8
PSO478G4502 Papaver somniferum HOM05D001053 ORTHO05D004820 4.0e-15 84.7 81 56.8
AL8G37720 Arabidopsis lyrata HOM05D001053 ORTHO05D004820 5.2e-15 84.3 89 52.8
Carub.0008s2176 Capsella rubella HOM05D001053 ORTHO05D004820 5.2e-15 84.3 86 53.5
HPP92_006052 Vanilla planifolia HOM05D001053 ORTHO05D004820 8.8e-15 83.6 93 46.2
CDE02G2613 Ceratophyllum demersum HOM05D001053 ORTHO05D004820 2.6e-14 82.0 81 54.3
Hund02590 Selenicereus undatus HOM05D001053 ORTHO05D004820 2.6e-14 82.0 52 73.1
VMungo1215G0855 Vigna mungo HOM05D001053 ORTHO05D004820 2.6e-14 82.0 80 52.5
SalBow1G6805 Salvia bowleyana HOM05D001053 ORTHO05D004820 4.4e-14 81.3 73 61.6
A02p33730 Brassica napus HOM05D000065 ORTHO05D010586 7.5e-14 80.5 51 76.5
BraA02t08391Z Brassica rapa HOM05D000065 ORTHO05D010586 7.5e-14 80.5 51 76.5
Os07g0602200 Oryza sativa ssp. japonica HOM05D001053 ORTHO05D004820 7.5e-14 80.5 89 50.6
CARHR274770 Cardamine hirsuta HOM05D001053 ORTHO05D004820 9.8e-14 80.1 89 49.4
Zm00001eb108570 Zea mays HOM05D001053 ORTHO05D004820 9.8e-14 80.1 78 53.8
AT5G61070 Arabidopsis thaliana HOM05D001053 ORTHO05D004820 1.7e-13 79.3 72 56.9
A02p41380 Brassica napus HOM05D001053 ORTHO05D004820 1.4e-12 76.3 87 46.0
SalBow5G2451 Salvia bowleyana HOM05D001053 ORTHO05D004820 1.4e-12 76.3 73 56.2
SalBow1G7771 Salvia bowleyana HOM05D001053 ORTHO05D004820 2.4e-12 75.5 73 57.5
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 2.4e-12 75.5 49 67.3
BraA02t09080Z Brassica rapa HOM05D001053 ORTHO05D004820 3.1e-12 75.1 76 51.3
Eucgr.L02060 Eucalyptus grandis HOM05D001053 ORTHO05D004820 9.2e-12 73.6 93 46.2
unitig_26.g9658 Utricularia gibba HOM05D001053 ORTHO05D004820 2.7e-11 72.0 72 56.9
Migut.D01742 Erythranthe guttata HOM05D001053 ORTHO05D004820 1.0e-10 70.1 77 50.6
Migut.D01491 Erythranthe guttata HOM05D001053 ORTHO05D004820 2.3e-10 68.9 77 49.4
Migut.D01743 Erythranthe guttata HOM05D001053 ORTHO05D004820 2.3e-10 68.9 77 49.4
SMO203G0267 Selaginella moellendorffii HOM05D001053 ORTHO05D004820 3.8e-10 68.2 86 43.0
Migut.D01741 Erythranthe guttata HOM05D001053 ORTHO05D004820 4.3e-09 64.7 77 48.1
Pp3c14_21020 Physcomitrium patens HOM05D001053 ORTHO05D004820 1.6e-08 62.8 75 42.7
ECA247G0276 Erigeron canadensis HOM05D001053 ORTHO05D004820 1.8e-07 59.3 52 55.8
Mapoly0049s0028 Marchantia polymorpha HOM05D001053 ORTHO05D004820 3.0e-07 58.5 78 43.6
Migut.D01738 Erythranthe guttata HOM05D001053 ORTHO05D004820 5.2e-07 57.8 74 43.2
SalBow5G2522 Salvia bowleyana HOM05D001053 ORTHO05D004820 1.5e-06 56.2 69 47.8


User provided reference genes

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